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Literature DB >> 23798033

Thermodynamic and functional characteristics of deep-sea enzymes revealed by pressure effects.

Eiji Ohmae¹, Yurina Miyashita, Chiaki Kato.

Abstract

Hydrostatic pressure analysis is an ideal approach for studying protein dynamics and hydration. The development of full ocean depth submersibles and high pressure biological techniques allows us to investigate enzymes from deep-sea organisms at the molecular level. The aim of this review was to overview the thermodynamic and functional characteristics of deep-sea enzymes as revealed by pressure axis analysis after giving a brief introduction to the thermodynamic principles underlying the effects of pressure on the structural stability and function of enzymes.

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Year: 2013 PMID： 23798033 DOI： 10.1007/s00792-013-0556-2

Source DB: PubMed Journal: Extremophiles ISSN： 1431-0651 Impact factor: 2.395

72 in total

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Journal: Biochim Biophys Acta Date: 2002-03-25

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Review 5. High-pressure protein crystallography and NMR to explore protein conformations.

Authors: Marcus D Collins; Chae Un Kim; Sol M Gruner
Journal: Annu Rev Biophys Date: 2011 Impact factor: 12.981

6. Structural analysis of 3-isopropylmalate dehydrogenase from the obligate piezophile Shewanella benthica DB21MT-2 and the nonpiezophile Shewanella oneidensis MR-1.

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Authors: Amanda A Brindley; Richard W Pickersgill; Julian C Partridge; David J Dunstan; David M Hunt; Martin J Warren
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13 in total

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2. What makes proteins work: exploring life in P-T-X.

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3. Extreme biophysics: Enzymes under pressure.

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Journal: J Comput Chem Date: 2017-01-19 Impact factor: 3.376

4. Increases of heat shock proteins and their mRNAs at high hydrostatic pressure in a deep-sea piezophilic bacterium, Shewanella violacea.

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5. Quasiharmonic Analysis of the Energy Landscapes of Dihydrofolate Reductase from Piezophiles and Mesophiles.

Authors: Qi Huang; Jocelyn M Rodgers; Russell J Hemley; Toshiko Ichiye
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Review 6. Enzymes from piezophiles.

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7. The Enigmatic Genome of an Obligate Ancient Spiroplasma Symbiont in a Hadal Holothurian.

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Journal: Appl Environ Microbiol Date: 2017-12-15 Impact factor: 4.792

8. Pressure adaptation of 3-isopropylmalate dehydrogenase from an extremely piezophilic bacterium is attributed to a single amino acid substitution.

Authors: Yuki Hamajima; Takayuki Nagae; Nobuhisa Watanabe; Eiji Ohmae; Yasuyuki Kato-Yamada; Chiaki Kato
Journal: Extremophiles Date: 2016-02-05 Impact factor: 2.395

9. Trace Elemental Analysis of the Exoskeleton, Leg Muscle, and Gut of Three Hadal Amphipods.

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10. De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish.

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