Literature DB >> 21275639

High-pressure protein crystallography and NMR to explore protein conformations.

Marcus D Collins1, Chae Un Kim, Sol M Gruner.   

Abstract

High-pressure methods for solving protein structures by X-ray crystallography and NMR are maturing. These techniques are beginning to impact our understanding of thermodynamic and structural features that define not only the protein's native conformation, but also the higher free energy conformations. The ability of high-pressure methods to visualize these mostly unexplored conformations provides new insight into protein function and dynamics. In this review, we begin with a historical discussion of high-pressure structural studies, with an eye toward early results that paved the way to mapping the multiple conformations of proteins. This is followed by an examination of several recent studies that emphasize different strengths and uses of high-pressure structural studies, ranging from basic thermodynamics to the suggestion of high-pressure structural methods as a tool for protein engineering.

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Year:  2011        PMID: 21275639     DOI: 10.1146/annurev-biophys-042910-155304

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  16 in total

1.  Revealing conformational substates of lipidated N-Ras protein by pressure modulation.

Authors:  Shobhna Kapoor; Gemma Triola; Ingrid R Vetter; Mirko Erlkamp; Herbert Waldmann; Roland Winter
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

Review 2.  Thermodynamic and functional characteristics of deep-sea enzymes revealed by pressure effects.

Authors:  Eiji Ohmae; Yurina Miyashita; Chiaki Kato
Journal:  Extremophiles       Date:  2013-09       Impact factor: 2.395

3.  Role of cavities and hydration in the pressure unfolding of T4 lysozyme.

Authors:  Nathaniel V Nucci; Brian Fuglestad; Evangelia A Athanasoula; A Joshua Wand
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

4.  Effects of protein-crystal hydration and temperature on side-chain conformational heterogeneity in monoclinic lysozyme crystals.

Authors:  Hakan Atakisi; David W Moreau; Robert E Thorne
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-04-03       Impact factor: 7.652

5.  What makes proteins work: exploring life in P-T-X.

Authors:  Toshiko Ichiye
Journal:  Phys Biol       Date:  2016-11-15       Impact factor: 2.583

6.  Extreme biophysics: Enzymes under pressure.

Authors:  Qi Huang; Jocelyn M Rodgers; Russell J Hemley; Toshiko Ichiye
Journal:  J Comput Chem       Date:  2017-01-19       Impact factor: 3.376

7.  Volume and compressibility differences between protein conformations revealed by high-pressure NMR.

Authors:  Xingjian Xu; Donald Gagné; James M Aramini; Kevin H Gardner
Journal:  Biophys J       Date:  2021-01-30       Impact factor: 4.033

8.  High-pressure-induced water penetration into 3-isopropylmalate dehydrogenase.

Authors:  Takayuki Nagae; Takashi Kawamura; Leonard M G Chavas; Ken Niwa; Masashi Hasegawa; Chiaki Kato; Nobuhisa Watanabe
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-02-14

9.  High-pressure protein crystallography of hen egg-white lysozyme.

Authors:  Hiroyuki Yamada; Takayuki Nagae; Nobuhisa Watanabe
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-03-26

10.  High-pressure NMR measurements provide insights into the different structural states that proteins can adopt.

Authors:  Remco Sprangers
Journal:  Biophys J       Date:  2021-01-22       Impact factor: 4.033

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