Literature DB >> 29331641

Enzymes from piezophiles.

Toshiko Ichiye1.   

Abstract

The discovery of microbial communities in extreme conditions that would seem hostile to life leads to the question of how the molecules making up these microbes can maintain their structure and function. While microbes that live under extremes of temperature have been heavily studied, those that live under extremes of pressure, or "piezophiles", are now increasingly being studied because of advances in s<span class="Chemical">ample collection and high-pressure cells for biochemical and biophysical measurements. Here, adaptations of enzymes in piezophiles against the effects of pressure are discussed in light of recent experimental and computational studies. However, while concepts from studies of enzymes from temperature extremophiles can provide frameworks for understanding adaptations by piezophile enzymes, the effects of temperature and pressure on proteins differ in significant ways. Thus, the state of the knowledge of adaptation in piezophile enzymes is still in its infancy and many more experiments and computational studies on different enzymes from a variety of piezophiles are needed.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Piezophilicity; Pressure adaptation

Mesh:

Substances:

Year:  2018        PMID: 29331641      PMCID: PMC6050138          DOI: 10.1016/j.semcdb.2018.01.004

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  79 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Close identity of a pressure-stabilized intermediate with a kinetic intermediate in protein folding.

Authors:  Ryo Kitahara; Kazuyuki Akasaka
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-10       Impact factor: 11.205

3.  Picosecond fluctuating protein energy landscape mapped by pressure temperature molecular dynamics simulation.

Authors:  Lars Meinhold; Jeremy C Smith; Akio Kitao; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-23       Impact factor: 11.205

4.  Are the catalytic properties of enzymes from piezophilic organisms pressure adapted?

Authors:  Sam Hay; Rhiannon M Evans; Colin Levy; E Joel Loveridge; Xi Wang; David Leys; Rudolf K Allemann; Nigel S Scrutton
Journal:  Chembiochem       Date:  2009-09-21       Impact factor: 3.164

5.  Solute accumulation in the deep-sea bacterium Photobacterium profundum.

Authors:  Deana Desmarais Martin; Douglas H Bartlett; Mary F Roberts
Journal:  Extremophiles       Date:  2002-09-07       Impact factor: 2.395

6.  Role of cavities and hydration in the pressure unfolding of T4 lysozyme.

Authors:  Nathaniel V Nucci; Brian Fuglestad; Evangelia A Athanasoula; A Joshua Wand
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

Review 7.  Pressure stability of proteins.

Authors:  J L Silva; G Weber
Journal:  Annu Rev Phys Chem       Date:  1993       Impact factor: 12.703

8.  Synchronous effects of temperature, hydrostatic pressure, and salinity on growth, phospholipid profiles, and protein patterns of four Halomonas species isolated from deep-sea hydrothermal-vent and sea surface environments.

Authors:  Jonathan Z Kaye; John A Baross
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

Review 9.  Psychrophilic enzymes: from folding to function and biotechnology.

Authors:  Georges Feller
Journal:  Scientifica (Cairo)       Date:  2013-01-17

10.  Transcriptomics reveal several gene expression patterns in the piezophile Desulfovibrio hydrothermalis in response to hydrostatic pressure.

Authors:  Amira Amrani; Aurélie Bergon; Hélène Holota; Christian Tamburini; Marc Garel; Bernard Ollivier; Jean Imbert; Alain Dolla; Nathalie Pradel
Journal:  PLoS One       Date:  2014-09-12       Impact factor: 3.240

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4.  How adding a single methylene to dihydrofolate reductase can change its conformational dynamics.

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Review 5.  Properties and Applications of Extremozymes from Deep-Sea Extremophilic Microorganisms: A Mini Review.

Authors:  Min Jin; Yingbao Gai; Xun Guo; Yanping Hou; Runying Zeng
Journal:  Mar Drugs       Date:  2019-11-21       Impact factor: 5.118

6.  Pressure tolerance of deep-sea enzymes can be evolved through increasing volume changes in protein transitions: a study with lactate dehydrogenases from abyssal and hadal fishes.

Authors:  Mackenzie E Gerringer; Paul H Yancey; Olga V Tikhonova; Nikita E Vavilov; Victor G Zgoda; Dmitri R Davydov
Journal:  FEBS J       Date:  2020-04-21       Impact factor: 5.542

  6 in total

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