Literature DB >> 23795499

A new structural technique for examining ion-neutral association in aqueous solution.

Philip E Mason1, George W Neilson, David L Price, Marie-Louise Saboungi, John W Brady.   

Abstract

The method of intramolecular coordination number concentration invariance (ICNCI) is used on neutron diffraction with isotopic substitution (NDIS) measurements of aqueous solutions to separate the intra- and intermolecular contributions to the total intensities. Molecular dynamics simulations of corresponding systems are then used to interpret the ICNCI function. It is found that the ICNCI function (characterized by two concentration measurements) is sensitive specifically to intermolecular association and that the molecular dynamics can successfully replicate this function in the cases of the neutral species xylose and pyridine in aqueous solution. ICNCI functions can also be obtained by the addition of a cosolute (such as adding GdmCl or Gdm2SO4 to pyridine solutions). In that case it is found that molecular dynamics can replicate the ICNCI function for the addition of GdmCl to pyridine, but fails to successfully replicate the same function for the addition of Gdm2SO4. This result implies that the interaction of pyridine with guanidinium sulfate is over-estimated in these MD simulations, and is of significant importance to the use of molecular dynamics simulations to elucidate an atomic level understanding of the Hofmeister series.

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Year:  2013        PMID: 23795499      PMCID: PMC3694749          DOI: 10.1039/c2fd20081c

Source DB:  PubMed          Journal:  Faraday Discuss        ISSN: 1359-6640            Impact factor:   4.008


  11 in total

1.  Electronic continuum model for molecular dynamics simulations of biological molecules.

Authors:  I V Leontyev; A A Stuchebrukhov
Journal:  J Chem Theory Comput       Date:  2010       Impact factor: 6.006

2.  Neutron diffraction and simulation studies of CsNO3 and Cs2CO3 solutions.

Authors:  Philip E Mason; George W Neilson; Christopher E Dempsey; John W Brady
Journal:  J Am Chem Soc       Date:  2006-11-29       Impact factor: 15.419

3.  Nanometer-scale ion aggregates in aqueous electrolyte solutions: guanidinium sulfate and guanidinium thiocyanate.

Authors:  P E Mason; C E Dempsey; G W Neilson; J W Brady
Journal:  J Phys Chem B       Date:  2005-12-22       Impact factor: 2.991

Review 4.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

5.  Neutron diffraction studies of electrolytes in null water: a direct determination of the first hydration zone of ions.

Authors:  P E Mason; S Ansell; G W Neilson
Journal:  J Phys Condens Matter       Date:  2006-08-30       Impact factor: 2.333

6.  Observation of pyridine aggregation in aqueous solution using neutron scattering experiments and MD simulations.

Authors:  Philip E Mason; George W Neilson; Christopher E Dempsey; David L Price; Marie-Louise Saboungi; John W Brady
Journal:  J Phys Chem B       Date:  2010-04-29       Impact factor: 2.991

7.  Electronic Polarizability and the Effective Pair Potentials of Water.

Authors:  I V Leontyev; A A Stuchebrukhov
Journal:  J Chem Theory Comput       Date:  2010-10-12       Impact factor: 6.006

8.  Preferential interactions of guanidinum ions with aromatic groups over aliphatic groups.

Authors:  Philip E Mason; Christopher E Dempsey; George W Neilson; Steve R Kline; John W Brady
Journal:  J Am Chem Soc       Date:  2009-11-25       Impact factor: 15.419

9.  Carbohydrate solution simulations: producing a force field with experimentally consistent primary alcohol rotational frequencies and populations.

Authors:  Michelle Kuttel; J W Brady; Kevin J Naidoo
Journal:  J Comput Chem       Date:  2002-10       Impact factor: 3.376

10.  The reversal by sulfate of the denaturant activity of guanidinium.

Authors:  Christopher E Dempsey; Philip E Mason; John W Brady; George W Neilson
Journal:  J Am Chem Soc       Date:  2007-12-04       Impact factor: 15.419

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