Literature DB >> 23795057

N'-[(E)-2-Hy-droxy-5-meth-oxy-benzyl-idene]pyridine-4-carbohydrazide monohydrate.

M K Prasanna1, M Sithambaresan, K Pradeepkumar, M R Prathapachandra Kurup.   

Abstract

The title compound, C14H13N3O3·H2O, adopts an E conformation with respect to the azomethine bond and crystallizes in the amide form. An intra-molecular O-H⋯N hydrogen bond occurs. In the crystal, the lattice water molecule plays a major role in the supramolecular architecture by interconnecting adjacent molecules into a three-dimensional netwrok by means of O-H⋯O, O-H⋯N and N-H⋯O hydrogen-bonding inter-actions. The structure also features two non-classical C-H⋯O inter-actions.

Entities:  

Year:  2013        PMID: 23795057      PMCID: PMC3685038          DOI: 10.1107/S160053681301235X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For properties of carbohydrazide and its derivatives, see: Mangalam & Kurup (2011 ▶). For mol­ecular sensing of metals, see: Bakir & Brown (2002 ▶). For related structures and background references, see: Kargar et al. (2010 ▶); Shafiq et al. (2009 ▶); Sithambaresan & Kurup (2011 ▶). For the synthesis, see: Mangalam et al. (2009 ▶).

Experimental

Crystal data

C14H13N3O3·H2O M = 289.29 Orthorhombic, a = 12.6455 (16) Å b = 12.7423 (16) Å c = 8.9306 (9) Å V = 1439.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.40 × 0.30 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.965, T max = 0.976 10294 measured reflections 1668 independent reflections 1134 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.124 S = 1.00 1668 reflections 208 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681301235X/fj2628sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301235X/fj2628Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681301235X/fj2628Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H13N3O3·H2OF(000) = 608
Mr = 289.29Dx = 1.335 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 1943 reflections
a = 12.6455 (16) Åθ = 2.8–27.5°
b = 12.7423 (16) ŵ = 0.10 mm1
c = 8.9306 (9) ÅT = 296 K
V = 1439.0 (3) Å3Block, yellow
Z = 40.40 × 0.30 × 0.25 mm
Bruker Kappa APEXII CCD diffractometer1668 independent reflections
Radiation source: fine-focus sealed tube1134 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.056
Detector resolution: 8.33 pixels mm-1θmax = 27.0°, θmin = 2.8°
ω and φ scanh = −16→15
Absorption correction: multi-scan (SADABS; Bruker, 2004)k = −14→16
Tmin = 0.965, Tmax = 0.976l = −11→9
10294 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.124w = 1/[σ2(Fo2) + (0.0701P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
1668 reflectionsΔρmax = 0.17 e Å3
208 parametersΔρmin = −0.15 e Å3
6 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.012 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.1808 (2)0.4322 (3)−0.0082 (3)0.0751 (10)
O20.4338 (2)0.2150 (3)0.3839 (3)0.0617 (9)
O30.37204 (18)0.1124 (2)0.7981 (3)0.0518 (7)
O1S1.0079 (2)0.2238 (2)0.7337 (4)0.0590 (8)
N10.2710 (2)0.2049 (2)0.5685 (3)0.0397 (7)
N20.2196 (2)0.1700 (3)0.6956 (3)0.0408 (7)
N30.1091 (3)−0.0404 (3)1.1458 (4)0.0575 (9)
C10.3661 (3)0.2681 (3)0.2933 (4)0.0411 (8)
C20.4043 (3)0.3044 (3)0.1575 (4)0.0507 (10)
H20.47470.29280.13260.061*
C30.3409 (3)0.3566 (3)0.0601 (4)0.0533 (11)
H30.36790.3792−0.03120.064*
C40.2361 (3)0.3764 (3)0.0963 (4)0.0497 (10)
C50.1962 (3)0.3413 (3)0.2291 (4)0.0428 (9)
H50.12570.35400.25280.051*
C60.2605 (3)0.2865 (3)0.3301 (3)0.0353 (8)
C70.2147 (3)0.2507 (3)0.4707 (4)0.0391 (8)
H70.14320.26150.48900.047*
C80.2760 (3)0.1203 (3)0.8009 (3)0.0360 (8)
C90.2130 (2)0.0700 (3)0.9218 (3)0.0345 (8)
C100.2574 (3)0.0576 (3)1.0612 (5)0.0558 (11)
H100.32360.08561.08230.067*
C110.2026 (4)0.0036 (4)1.1683 (5)0.0651 (13)
H110.2329−0.00251.26280.078*
C120.0673 (3)−0.0275 (3)1.0122 (5)0.0513 (10)
H120.0012−0.05690.99410.062*
C130.1150 (3)0.0265 (3)0.8976 (4)0.0404 (8)
H130.08170.03360.80530.049*
C140.0712 (4)0.4431 (4)0.0117 (5)0.0759 (15)
H14A0.03910.37500.01750.114*
H14B0.04180.4810−0.07140.114*
H14C0.05760.48090.10270.114*
H2'0.1551 (15)0.191 (3)0.720 (5)0.054 (12)*
H1A0.973 (3)0.279 (2)0.757 (6)0.093 (19)*
H1B0.962 (3)0.175 (2)0.722 (6)0.081 (16)*
H2A0.400 (3)0.198 (3)0.462 (3)0.066 (14)*
U11U22U33U12U13U23
O10.069 (2)0.106 (3)0.0501 (17)−0.0069 (18)−0.0104 (16)0.0408 (18)
O20.0470 (15)0.080 (2)0.0580 (18)0.0194 (14)0.0147 (16)0.0220 (16)
O30.0316 (13)0.0695 (19)0.0542 (15)−0.0047 (12)−0.0016 (12)0.0243 (13)
O1S0.0376 (14)0.0544 (18)0.085 (2)0.0050 (14)−0.0006 (15)−0.0197 (16)
N10.0355 (15)0.0484 (18)0.0351 (15)−0.0004 (14)0.0036 (14)0.0125 (14)
N20.0352 (16)0.0528 (19)0.0343 (16)0.0034 (15)0.0074 (14)0.0151 (13)
N30.056 (2)0.063 (2)0.054 (2)−0.0059 (18)0.0109 (17)0.0184 (17)
C10.0422 (19)0.042 (2)0.0394 (18)0.0026 (16)0.0076 (16)0.0070 (16)
C20.046 (2)0.060 (3)0.046 (2)−0.0011 (19)0.0176 (18)0.0028 (18)
C30.063 (3)0.063 (3)0.0331 (19)−0.006 (2)0.0128 (19)0.0101 (18)
C40.055 (3)0.058 (3)0.036 (2)−0.0101 (19)−0.0029 (19)0.0129 (19)
C50.0341 (18)0.055 (2)0.040 (2)−0.0037 (16)−0.0040 (16)0.0079 (18)
C60.0357 (18)0.037 (2)0.0327 (18)−0.0067 (14)0.0004 (15)0.0028 (15)
C70.0307 (18)0.051 (2)0.0357 (19)−0.0024 (16)0.0034 (15)0.0033 (16)
C80.0342 (18)0.0392 (19)0.0346 (18)−0.0041 (15)−0.0024 (16)0.0083 (15)
C90.0324 (17)0.0366 (19)0.0346 (18)−0.0009 (14)0.0022 (15)0.0044 (15)
C100.054 (3)0.070 (3)0.044 (2)−0.022 (2)−0.011 (2)0.017 (2)
C110.072 (3)0.086 (4)0.036 (2)−0.021 (3)−0.0063 (19)0.023 (2)
C120.0378 (19)0.053 (3)0.063 (3)−0.0039 (17)0.0056 (19)0.014 (2)
C130.0373 (18)0.043 (2)0.0413 (19)−0.0026 (15)−0.0012 (16)0.0073 (16)
C140.066 (3)0.086 (4)0.076 (3)−0.016 (3)−0.030 (3)0.036 (3)
O1—C41.366 (4)C3—H30.9300
O1—C141.405 (5)C4—C51.364 (5)
O2—C11.358 (5)C5—C61.402 (5)
O2—H2A0.847 (10)C5—H50.9300
O3—C81.218 (4)C6—C71.456 (5)
O1S—H1A0.856 (10)C7—H70.9300
O1S—H1B0.859 (10)C8—C91.487 (4)
N1—C71.269 (4)C9—C131.374 (5)
N1—N21.381 (4)C9—C101.374 (5)
N2—C81.341 (4)C10—C111.367 (6)
N2—H2'0.885 (10)C10—H100.9300
N3—C121.315 (5)C11—H110.9300
N3—C111.325 (5)C12—C131.373 (5)
C1—C21.384 (5)C12—H120.9300
C1—C61.395 (5)C13—H130.9300
C2—C31.357 (6)C14—H14A0.9600
C2—H20.9300C14—H14B0.9600
C3—C41.388 (6)C14—H14C0.9600
C4—O1—C14118.0 (3)N1—C7—H7119.5
C1—O2—H2A107 (3)C6—C7—H7119.5
H1A—O1S—H1B106 (2)O3—C8—N2123.8 (3)
C7—N1—N2116.7 (3)O3—C8—C9120.9 (3)
C8—N2—N1118.5 (3)N2—C8—C9115.3 (3)
C8—N2—H2'118 (3)C13—C9—C10117.7 (3)
N1—N2—H2'122 (3)C13—C9—C8122.9 (3)
C12—N3—C11116.3 (3)C10—C9—C8119.2 (3)
O2—C1—C2117.9 (3)C11—C10—C9119.0 (4)
O2—C1—C6123.1 (3)C11—C10—H10120.5
C2—C1—C6118.9 (3)C9—C10—H10120.5
C3—C2—C1121.3 (4)N3—C11—C10124.0 (4)
C3—C2—H2119.3N3—C11—H11118.0
C1—C2—H2119.3C10—C11—H11118.0
C2—C3—C4120.2 (3)N3—C12—C13124.2 (4)
C2—C3—H3119.9N3—C12—H12117.9
C4—C3—H3119.9C13—C12—H12117.9
C5—C4—O1125.1 (4)C12—C13—C9118.8 (3)
C5—C4—C3119.8 (4)C12—C13—H13120.6
O1—C4—C3115.1 (3)C9—C13—H13120.6
C4—C5—C6120.5 (3)O1—C14—H14A109.5
C4—C5—H5119.7O1—C14—H14B109.5
C6—C5—H5119.7H14A—C14—H14B109.5
C1—C6—C5119.2 (3)O1—C14—H14C109.5
C1—C6—C7122.1 (3)H14A—C14—H14C109.5
C5—C6—C7118.7 (3)H14B—C14—H14C109.5
N1—C7—C6121.0 (3)
C7—N1—N2—C8179.3 (3)C1—C6—C7—N13.1 (5)
O2—C1—C2—C3179.0 (4)C5—C6—C7—N1−176.8 (3)
C6—C1—C2—C3−0.4 (6)N1—N2—C8—O37.1 (6)
C1—C2—C3—C41.1 (6)N1—N2—C8—C9−170.4 (3)
C14—O1—C4—C5−8.9 (7)O3—C8—C9—C13−144.0 (4)
C14—O1—C4—C3171.8 (4)N2—C8—C9—C1333.6 (5)
C2—C3—C4—C5−1.3 (6)O3—C8—C9—C1030.2 (6)
C2—C3—C4—O1178.1 (4)N2—C8—C9—C10−152.3 (4)
O1—C4—C5—C6−178.6 (4)C13—C9—C10—C11−0.2 (6)
C3—C4—C5—C60.7 (6)C8—C9—C10—C11−174.6 (4)
O2—C1—C6—C5−179.5 (4)C12—N3—C11—C10−1.9 (7)
C2—C1—C6—C5−0.1 (5)C9—C10—C11—N31.6 (7)
O2—C1—C6—C70.6 (5)C11—N3—C12—C130.9 (6)
C2—C1—C6—C7180.0 (3)N3—C12—C13—C90.4 (6)
C4—C5—C6—C10.0 (5)C10—C9—C13—C12−0.7 (5)
C4—C5—C6—C7179.9 (3)C8—C9—C13—C12173.5 (3)
N2—N1—C7—C6−177.5 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2′···O1Si0.89 (1)1.91 (1)2.784 (4)168 (4)
O1S—H1A···O3ii0.86 (1)1.92 (2)2.764 (4)170 (4)
O1S—H1B···N3iii0.86 (1)2.05 (2)2.874 (5)160 (4)
O2—H2A···N10.85 (1)1.89 (3)2.642 (4)147 (4)
C11—H11···O1iv0.932.463.370 (5)164
C14—H14C···O3v0.962.583.425 (5)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2′⋯O1S i 0.89 (1)1.91 (1)2.784 (4)168 (4)
O1S—H1A⋯O3ii 0.86 (1)1.92 (2)2.764 (4)170 (4)
O1S—H1B⋯N3iii 0.86 (1)2.05 (2)2.874 (5)160 (4)
O2—H2A⋯N10.85 (1)1.89 (3)2.642 (4)147 (4)
C11—H11⋯O1iv 0.932.463.370 (5)164
C14—H14C⋯O3v 0.962.583.425 (5)147

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  N'-[(E)-4-Hydr-oxy-3-methoxy-benzyl-idene]pyridine-4-carbohydrazide.

Authors:  Zahid Shafiq; Muhammad Yaqub; M Nawaz Tahir; Abid Hussain; M Saeed Iqbal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-28

3.  N'-[(E)-2-Hy-droxy-5-meth-oxy-benzyl-idene]pyridine-4-carbohydrazide.

Authors:  Hadi Kargar; Reza Kia; Mehmet Akkurt; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-30

4.  2-(3-Eth-oxy-2-hy-droxy-benz-ylidene)-N-phenyl-hydrazinecarboxamide.

Authors:  M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22
  4 in total
  2 in total

1.  N'-{(E)-[5-(Hy-droxy-meth-yl)furan-2-yl]methyl-idene}pyridine-4-carbohydrazide dihydrate.

Authors:  M K Prasanna; M Sithambaresan; K Pradeepkumar; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-27

2.  N'-[(E)-3-Bromo-5-chloro-2-hy-droxy-benzyl-idene]furan-2-carbohydrazide.

Authors:  A Sundar; S Ranjith; G Rajagopal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-17
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