| Literature DB >> 23795057 |
M K Prasanna1, M Sithambaresan, K Pradeepkumar, M R Prathapachandra Kurup.
Abstract
The title compound, C14H13N3O3·H2O, adopts an E conformation with respect to the azomethine bond and crystallizes in the amide form. An intra-molecular O-H⋯N hydrogen bond occurs. In the crystal, the lattice water molecule plays a major role in the supramolecular architecture by interconnecting adjacent molecules into a three-dimensional netwrok by means of O-H⋯O, O-H⋯N and N-H⋯O hydrogen-bonding inter-actions. The structure also features two non-classical C-H⋯O inter-actions.Entities:
Year: 2013 PMID: 23795057 PMCID: PMC3685038 DOI: 10.1107/S160053681301235X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H13N3O3·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 1943 reflections |
| θ = 2.8–27.5° | |
| µ = 0.10 mm−1 | |
| Block, yellow | |
| 0.40 × 0.30 × 0.25 mm |
| Bruker Kappa APEXII CCD diffractometer | 1668 independent reflections |
| Radiation source: fine-focus sealed tube | 1134 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.33 pixels mm-1 | θmax = 27.0°, θmin = 2.8° |
| ω and φ scan | |
| Absorption correction: multi-scan ( | |
| 10294 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 1668 reflections | Δρmax = 0.17 e Å−3 |
| 208 parameters | Δρmin = −0.15 e Å−3 |
| 6 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.012 (3) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.1808 (2) | 0.4322 (3) | −0.0082 (3) | 0.0751 (10) | |
| O2 | 0.4338 (2) | 0.2150 (3) | 0.3839 (3) | 0.0617 (9) | |
| O3 | 0.37204 (18) | 0.1124 (2) | 0.7981 (3) | 0.0518 (7) | |
| O1S | 1.0079 (2) | 0.2238 (2) | 0.7337 (4) | 0.0590 (8) | |
| N1 | 0.2710 (2) | 0.2049 (2) | 0.5685 (3) | 0.0397 (7) | |
| N2 | 0.2196 (2) | 0.1700 (3) | 0.6956 (3) | 0.0408 (7) | |
| N3 | 0.1091 (3) | −0.0404 (3) | 1.1458 (4) | 0.0575 (9) | |
| C1 | 0.3661 (3) | 0.2681 (3) | 0.2933 (4) | 0.0411 (8) | |
| C2 | 0.4043 (3) | 0.3044 (3) | 0.1575 (4) | 0.0507 (10) | |
| H2 | 0.4747 | 0.2928 | 0.1326 | 0.061* | |
| C3 | 0.3409 (3) | 0.3566 (3) | 0.0601 (4) | 0.0533 (11) | |
| H3 | 0.3679 | 0.3792 | −0.0312 | 0.064* | |
| C4 | 0.2361 (3) | 0.3764 (3) | 0.0963 (4) | 0.0497 (10) | |
| C5 | 0.1962 (3) | 0.3413 (3) | 0.2291 (4) | 0.0428 (9) | |
| H5 | 0.1257 | 0.3540 | 0.2528 | 0.051* | |
| C6 | 0.2605 (3) | 0.2865 (3) | 0.3301 (3) | 0.0353 (8) | |
| C7 | 0.2147 (3) | 0.2507 (3) | 0.4707 (4) | 0.0391 (8) | |
| H7 | 0.1432 | 0.2615 | 0.4890 | 0.047* | |
| C8 | 0.2760 (3) | 0.1203 (3) | 0.8009 (3) | 0.0360 (8) | |
| C9 | 0.2130 (2) | 0.0700 (3) | 0.9218 (3) | 0.0345 (8) | |
| C10 | 0.2574 (3) | 0.0576 (3) | 1.0612 (5) | 0.0558 (11) | |
| H10 | 0.3236 | 0.0856 | 1.0823 | 0.067* | |
| C11 | 0.2026 (4) | 0.0036 (4) | 1.1683 (5) | 0.0651 (13) | |
| H11 | 0.2329 | −0.0025 | 1.2628 | 0.078* | |
| C12 | 0.0673 (3) | −0.0275 (3) | 1.0122 (5) | 0.0513 (10) | |
| H12 | 0.0012 | −0.0569 | 0.9941 | 0.062* | |
| C13 | 0.1150 (3) | 0.0265 (3) | 0.8976 (4) | 0.0404 (8) | |
| H13 | 0.0817 | 0.0336 | 0.8053 | 0.049* | |
| C14 | 0.0712 (4) | 0.4431 (4) | 0.0117 (5) | 0.0759 (15) | |
| H14A | 0.0391 | 0.3750 | 0.0175 | 0.114* | |
| H14B | 0.0418 | 0.4810 | −0.0714 | 0.114* | |
| H14C | 0.0576 | 0.4809 | 0.1027 | 0.114* | |
| H2' | 0.1551 (15) | 0.191 (3) | 0.720 (5) | 0.054 (12)* | |
| H1A | 0.973 (3) | 0.279 (2) | 0.757 (6) | 0.093 (19)* | |
| H1B | 0.962 (3) | 0.175 (2) | 0.722 (6) | 0.081 (16)* | |
| H2A | 0.400 (3) | 0.198 (3) | 0.462 (3) | 0.066 (14)* |
| O1 | 0.069 (2) | 0.106 (3) | 0.0501 (17) | −0.0069 (18) | −0.0104 (16) | 0.0408 (18) |
| O2 | 0.0470 (15) | 0.080 (2) | 0.0580 (18) | 0.0194 (14) | 0.0147 (16) | 0.0220 (16) |
| O3 | 0.0316 (13) | 0.0695 (19) | 0.0542 (15) | −0.0047 (12) | −0.0016 (12) | 0.0243 (13) |
| O1S | 0.0376 (14) | 0.0544 (18) | 0.085 (2) | 0.0050 (14) | −0.0006 (15) | −0.0197 (16) |
| N1 | 0.0355 (15) | 0.0484 (18) | 0.0351 (15) | −0.0004 (14) | 0.0036 (14) | 0.0125 (14) |
| N2 | 0.0352 (16) | 0.0528 (19) | 0.0343 (16) | 0.0034 (15) | 0.0074 (14) | 0.0151 (13) |
| N3 | 0.056 (2) | 0.063 (2) | 0.054 (2) | −0.0059 (18) | 0.0109 (17) | 0.0184 (17) |
| C1 | 0.0422 (19) | 0.042 (2) | 0.0394 (18) | 0.0026 (16) | 0.0076 (16) | 0.0070 (16) |
| C2 | 0.046 (2) | 0.060 (3) | 0.046 (2) | −0.0011 (19) | 0.0176 (18) | 0.0028 (18) |
| C3 | 0.063 (3) | 0.063 (3) | 0.0331 (19) | −0.006 (2) | 0.0128 (19) | 0.0101 (18) |
| C4 | 0.055 (3) | 0.058 (3) | 0.036 (2) | −0.0101 (19) | −0.0029 (19) | 0.0129 (19) |
| C5 | 0.0341 (18) | 0.055 (2) | 0.040 (2) | −0.0037 (16) | −0.0040 (16) | 0.0079 (18) |
| C6 | 0.0357 (18) | 0.037 (2) | 0.0327 (18) | −0.0067 (14) | 0.0004 (15) | 0.0028 (15) |
| C7 | 0.0307 (18) | 0.051 (2) | 0.0357 (19) | −0.0024 (16) | 0.0034 (15) | 0.0033 (16) |
| C8 | 0.0342 (18) | 0.0392 (19) | 0.0346 (18) | −0.0041 (15) | −0.0024 (16) | 0.0083 (15) |
| C9 | 0.0324 (17) | 0.0366 (19) | 0.0346 (18) | −0.0009 (14) | 0.0022 (15) | 0.0044 (15) |
| C10 | 0.054 (3) | 0.070 (3) | 0.044 (2) | −0.022 (2) | −0.011 (2) | 0.017 (2) |
| C11 | 0.072 (3) | 0.086 (4) | 0.036 (2) | −0.021 (3) | −0.0063 (19) | 0.023 (2) |
| C12 | 0.0378 (19) | 0.053 (3) | 0.063 (3) | −0.0039 (17) | 0.0056 (19) | 0.014 (2) |
| C13 | 0.0373 (18) | 0.043 (2) | 0.0413 (19) | −0.0026 (15) | −0.0012 (16) | 0.0073 (16) |
| C14 | 0.066 (3) | 0.086 (4) | 0.076 (3) | −0.016 (3) | −0.030 (3) | 0.036 (3) |
| O1—C4 | 1.366 (4) | C3—H3 | 0.9300 |
| O1—C14 | 1.405 (5) | C4—C5 | 1.364 (5) |
| O2—C1 | 1.358 (5) | C5—C6 | 1.402 (5) |
| O2—H2A | 0.847 (10) | C5—H5 | 0.9300 |
| O3—C8 | 1.218 (4) | C6—C7 | 1.456 (5) |
| O1S—H1A | 0.856 (10) | C7—H7 | 0.9300 |
| O1S—H1B | 0.859 (10) | C8—C9 | 1.487 (4) |
| N1—C7 | 1.269 (4) | C9—C13 | 1.374 (5) |
| N1—N2 | 1.381 (4) | C9—C10 | 1.374 (5) |
| N2—C8 | 1.341 (4) | C10—C11 | 1.367 (6) |
| N2—H2' | 0.885 (10) | C10—H10 | 0.9300 |
| N3—C12 | 1.315 (5) | C11—H11 | 0.9300 |
| N3—C11 | 1.325 (5) | C12—C13 | 1.373 (5) |
| C1—C2 | 1.384 (5) | C12—H12 | 0.9300 |
| C1—C6 | 1.395 (5) | C13—H13 | 0.9300 |
| C2—C3 | 1.357 (6) | C14—H14A | 0.9600 |
| C2—H2 | 0.9300 | C14—H14B | 0.9600 |
| C3—C4 | 1.388 (6) | C14—H14C | 0.9600 |
| C4—O1—C14 | 118.0 (3) | N1—C7—H7 | 119.5 |
| C1—O2—H2A | 107 (3) | C6—C7—H7 | 119.5 |
| H1A—O1S—H1B | 106 (2) | O3—C8—N2 | 123.8 (3) |
| C7—N1—N2 | 116.7 (3) | O3—C8—C9 | 120.9 (3) |
| C8—N2—N1 | 118.5 (3) | N2—C8—C9 | 115.3 (3) |
| C8—N2—H2' | 118 (3) | C13—C9—C10 | 117.7 (3) |
| N1—N2—H2' | 122 (3) | C13—C9—C8 | 122.9 (3) |
| C12—N3—C11 | 116.3 (3) | C10—C9—C8 | 119.2 (3) |
| O2—C1—C2 | 117.9 (3) | C11—C10—C9 | 119.0 (4) |
| O2—C1—C6 | 123.1 (3) | C11—C10—H10 | 120.5 |
| C2—C1—C6 | 118.9 (3) | C9—C10—H10 | 120.5 |
| C3—C2—C1 | 121.3 (4) | N3—C11—C10 | 124.0 (4) |
| C3—C2—H2 | 119.3 | N3—C11—H11 | 118.0 |
| C1—C2—H2 | 119.3 | C10—C11—H11 | 118.0 |
| C2—C3—C4 | 120.2 (3) | N3—C12—C13 | 124.2 (4) |
| C2—C3—H3 | 119.9 | N3—C12—H12 | 117.9 |
| C4—C3—H3 | 119.9 | C13—C12—H12 | 117.9 |
| C5—C4—O1 | 125.1 (4) | C12—C13—C9 | 118.8 (3) |
| C5—C4—C3 | 119.8 (4) | C12—C13—H13 | 120.6 |
| O1—C4—C3 | 115.1 (3) | C9—C13—H13 | 120.6 |
| C4—C5—C6 | 120.5 (3) | O1—C14—H14A | 109.5 |
| C4—C5—H5 | 119.7 | O1—C14—H14B | 109.5 |
| C6—C5—H5 | 119.7 | H14A—C14—H14B | 109.5 |
| C1—C6—C5 | 119.2 (3) | O1—C14—H14C | 109.5 |
| C1—C6—C7 | 122.1 (3) | H14A—C14—H14C | 109.5 |
| C5—C6—C7 | 118.7 (3) | H14B—C14—H14C | 109.5 |
| N1—C7—C6 | 121.0 (3) | ||
| C7—N1—N2—C8 | 179.3 (3) | C1—C6—C7—N1 | 3.1 (5) |
| O2—C1—C2—C3 | 179.0 (4) | C5—C6—C7—N1 | −176.8 (3) |
| C6—C1—C2—C3 | −0.4 (6) | N1—N2—C8—O3 | 7.1 (6) |
| C1—C2—C3—C4 | 1.1 (6) | N1—N2—C8—C9 | −170.4 (3) |
| C14—O1—C4—C5 | −8.9 (7) | O3—C8—C9—C13 | −144.0 (4) |
| C14—O1—C4—C3 | 171.8 (4) | N2—C8—C9—C13 | 33.6 (5) |
| C2—C3—C4—C5 | −1.3 (6) | O3—C8—C9—C10 | 30.2 (6) |
| C2—C3—C4—O1 | 178.1 (4) | N2—C8—C9—C10 | −152.3 (4) |
| O1—C4—C5—C6 | −178.6 (4) | C13—C9—C10—C11 | −0.2 (6) |
| C3—C4—C5—C6 | 0.7 (6) | C8—C9—C10—C11 | −174.6 (4) |
| O2—C1—C6—C5 | −179.5 (4) | C12—N3—C11—C10 | −1.9 (7) |
| C2—C1—C6—C5 | −0.1 (5) | C9—C10—C11—N3 | 1.6 (7) |
| O2—C1—C6—C7 | 0.6 (5) | C11—N3—C12—C13 | 0.9 (6) |
| C2—C1—C6—C7 | 180.0 (3) | N3—C12—C13—C9 | 0.4 (6) |
| C4—C5—C6—C1 | 0.0 (5) | C10—C9—C13—C12 | −0.7 (5) |
| C4—C5—C6—C7 | 179.9 (3) | C8—C9—C13—C12 | 173.5 (3) |
| N2—N1—C7—C6 | −177.5 (3) |
| H··· | ||||
| N2—H2′···O1 | 0.89 (1) | 1.91 (1) | 2.784 (4) | 168 (4) |
| O1 | 0.86 (1) | 1.92 (2) | 2.764 (4) | 170 (4) |
| O1 | 0.86 (1) | 2.05 (2) | 2.874 (5) | 160 (4) |
| O2—H2 | 0.85 (1) | 1.89 (3) | 2.642 (4) | 147 (4) |
| C11—H11···O1iv | 0.93 | 2.46 | 3.370 (5) | 164 |
| C14—H14 | 0.96 | 2.58 | 3.425 (5) | 147 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2′⋯O1 | 0.89 (1) | 1.91 (1) | 2.784 (4) | 168 (4) |
| O1 | 0.86 (1) | 1.92 (2) | 2.764 (4) | 170 (4) |
| O1 | 0.86 (1) | 2.05 (2) | 2.874 (5) | 160 (4) |
| O2—H2 | 0.85 (1) | 1.89 (3) | 2.642 (4) | 147 (4) |
| C11—H11⋯O1iv | 0.93 | 2.46 | 3.370 (5) | 164 |
| C14—H14 | 0.96 | 2.58 | 3.425 (5) | 147 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .