Literature DB >> 21589148

N'-[(E)-2-Hy-droxy-5-meth-oxy-benzyl-idene]pyridine-4-carbohydrazide.

Hadi Kargar, Reza Kia, Mehmet Akkurt, Orhan Büyükgüngör.   

Abstract

In the title compound, C(14)H(13)N(3)O(3), the dihedral angle between the pyridine and benzene rings is 15.17 (18)°. The torsion angle of the -C=N-N-C- system between two aromatic rings is -167.1 (3)°. Intra-molecular O-H⋯N hydrogen bonding generates S(6) rings. In the crystal structure, neighbouring mol-ecules are linked together along the c axis by weak inter-molecular C-H⋯O and N-H⋯O hydrogen bonds, generating R(1) (2)(6) ring motifs.

Entities:  

Year:  2010        PMID: 21589148      PMCID: PMC3009050          DOI: 10.1107/S1600536810043382

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the tuberculostatic activity of isoniazid (isonicotinylhydrazine) derivatives, see: Janin (2007 ▶); Maccari et al. (2005 ▶). For the synthesis of the isoniazid derivative, see: Lourenco et al. (2008 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C14H13N3O3 M = 271.27 Monoclinic, a = 6.1114 (6) Å b = 29.489 (3) Å c = 7.4820 (7) Å β = 96.696 (8)° V = 1339.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.67 × 0.34 × 0.12 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.962, T max = 0.988 4353 measured reflections 1542 independent reflections 1166 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.114 S = 1.11 1542 reflections 191 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.16 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810043382/sj5051sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810043382/sj5051Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H13N3O3F(000) = 568
Mr = 271.27Dx = 1.345 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 7613 reflections
a = 6.1114 (6) Åθ = 2.8–28.0°
b = 29.489 (3) ŵ = 0.10 mm1
c = 7.4820 (7) ÅT = 296 K
β = 96.696 (8)°Prism, colourless
V = 1339.2 (2) Å30.67 × 0.34 × 0.12 mm
Z = 4
Stoe IPDS 2 diffractometer1542 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus1166 reflections with I > 2σ(I)
plane graphiteRint = 0.038
Detector resolution: 6.67 pixels mm-1θmax = 27.5°, θmin = 2.8°
ω scansh = −7→7
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −38→35
Tmin = 0.962, Tmax = 0.988l = −9→8
4353 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.114w = 1/[σ2(Fo2) + (0.0582P)2] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
1542 reflectionsΔρmax = 0.13 e Å3
191 parametersΔρmin = −0.16 e Å3
2 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0090 (19)
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.1045 (4)0.82503 (10)0.3515 (4)0.0727 (9)
O20.2101 (5)0.99107 (9)0.6041 (5)0.0844 (10)
O30.2501 (4)0.71171 (8)0.2791 (4)0.0743 (9)
N10.2870 (4)0.79115 (10)0.4570 (4)0.0619 (9)
N20.4398 (4)0.75656 (9)0.4882 (4)0.0622 (9)
N30.8707 (5)0.61195 (13)0.5468 (5)0.0794 (11)
C10.1994 (5)0.86852 (12)0.5002 (4)0.0572 (10)
C2−0.0172 (5)0.86497 (12)0.4151 (5)0.0599 (11)
C3−0.1453 (5)0.90380 (14)0.3930 (6)0.0753 (15)
C4−0.0645 (6)0.94459 (14)0.4568 (6)0.0766 (13)
C50.1486 (5)0.94855 (12)0.5445 (5)0.0646 (11)
C60.2792 (5)0.91072 (12)0.5652 (5)0.0611 (11)
C70.4191 (7)0.99583 (16)0.7042 (7)0.0830 (14)
C80.3464 (5)0.82985 (12)0.5228 (5)0.0591 (11)
C90.4075 (4)0.71774 (11)0.3949 (4)0.0574 (10)
C100.5728 (5)0.68156 (11)0.4456 (4)0.0564 (10)
C110.7920 (5)0.69069 (13)0.5046 (5)0.0672 (11)
C120.9319 (6)0.65507 (17)0.5525 (6)0.0778 (15)
C130.6605 (6)0.60362 (13)0.4866 (6)0.0739 (14)
C140.5073 (5)0.63664 (12)0.4332 (5)0.0655 (11)
H10.007 (7)0.8019 (15)0.363 (6)0.080 (12)*
H20.552 (7)0.7604 (14)0.572 (6)0.079 (11)*
H3−0.287700.902100.334000.0900*
H4−0.153400.970200.441500.0920*
H60.422000.913000.622900.0730*
H7A0.531500.988600.629200.1250*
H7B0.430200.975600.805400.1250*
H7C0.437901.026500.746000.1250*
H80.485700.833200.586000.0710*
H110.843500.720400.511800.0810*
H121.078600.661700.591200.0940*
H130.614300.573600.480400.0880*
H140.363300.628900.389800.0790*
U11U22U33U12U13U23
O10.0555 (12)0.0673 (16)0.0905 (19)0.0003 (11)−0.0119 (12)−0.0055 (13)
O20.0782 (15)0.0598 (16)0.111 (2)0.0057 (12)−0.0066 (15)−0.0122 (16)
O30.0669 (13)0.0602 (14)0.0864 (19)0.0021 (11)−0.0310 (12)−0.0050 (13)
N10.0523 (12)0.0570 (17)0.0721 (19)0.0056 (12)−0.0115 (12)0.0015 (14)
N20.0541 (12)0.0544 (16)0.0716 (18)0.0064 (12)−0.0195 (12)−0.0042 (14)
N30.0687 (18)0.079 (2)0.090 (2)0.0237 (16)0.0069 (15)0.0059 (19)
C10.0511 (15)0.061 (2)0.0581 (19)0.0045 (13)0.0008 (13)0.0026 (15)
C20.0478 (14)0.065 (2)0.066 (2)−0.0007 (14)0.0023 (13)0.0000 (17)
C30.0481 (17)0.078 (3)0.097 (3)0.0108 (16)−0.0031 (18)0.003 (2)
C40.0616 (18)0.069 (2)0.096 (3)0.0148 (17)−0.0043 (18)−0.002 (2)
C50.0606 (17)0.058 (2)0.074 (2)0.0017 (15)0.0028 (15)−0.0040 (18)
C60.0495 (15)0.062 (2)0.070 (2)0.0014 (13)−0.0011 (14)−0.0002 (16)
C70.081 (2)0.072 (2)0.093 (3)−0.0038 (19)−0.003 (2)−0.011 (2)
C80.0519 (14)0.059 (2)0.063 (2)0.0013 (13)−0.0081 (13)0.0011 (16)
C90.0458 (13)0.0562 (19)0.066 (2)−0.0026 (12)−0.0107 (13)0.0011 (16)
C100.0504 (14)0.0602 (19)0.0565 (18)0.0030 (13)−0.0027 (13)−0.0032 (16)
C110.0520 (15)0.070 (2)0.077 (2)0.0048 (15)−0.0028 (15)−0.0028 (19)
C120.0548 (16)0.090 (3)0.087 (3)0.0123 (18)0.0011 (17)−0.001 (2)
C130.074 (2)0.061 (2)0.086 (3)0.0101 (17)0.007 (2)−0.0042 (19)
C140.0616 (17)0.058 (2)0.076 (2)0.0017 (14)0.0039 (16)−0.0093 (18)
O1—C21.356 (5)C5—C61.370 (5)
O2—C51.369 (5)C9—C101.488 (4)
O2—C71.410 (6)C10—C111.387 (4)
O3—C91.230 (4)C10—C141.384 (5)
O1—H10.96 (4)C11—C121.375 (6)
N1—N21.384 (4)C13—C141.377 (5)
N1—C81.279 (5)C3—H30.9300
N2—C91.343 (4)C4—H40.9300
N3—C131.334 (5)C6—H60.9300
N3—C121.325 (6)C7—H7A0.9600
N2—H20.88 (4)C7—H7B0.9600
C1—C61.403 (5)C7—H7C0.9600
C1—C21.404 (4)C8—H80.9300
C1—C81.449 (5)C11—H110.9300
C2—C31.386 (5)C12—H120.9300
C3—C41.365 (6)C13—H130.9300
C4—C51.393 (5)C14—H140.9300
O1···N12.628 (4)C7···H62.5200
O1···C10i3.347 (4)C8···H12.42 (4)
O2···C7ii3.409 (6)C11···H22.61 (4)
O3···N2i2.872 (4)C12···H3viii3.0600
O3···C12iii3.418 (5)C14···H12iii3.0900
O3···N12.691 (4)H1···N11.80 (4)
O3···C8i3.188 (4)H1···C82.42 (4)
O1···H12iv2.6100H2···C112.61 (4)
O2···H13v2.6500H2···H82.1900
O2···H7Bii2.9100H2···H112.2300
O3···H142.6400H2···O3vi2.03 (4)
O3···H2i2.03 (4)H3···N3iv2.8500
O3···H8i2.4300H3···C12iv3.0600
N1···O12.628 (4)H4···H7Aiii2.5700
N1···O32.691 (4)H6···C72.5200
N1···C11i3.431 (5)H6···H7A2.3300
N2···O3vi2.872 (4)H6···H7B2.2900
N1···H11.80 (4)H6···H82.4100
N2···H112.6700H7A···C62.7800
N3···H7Cvii2.9300H7A···H4xi2.5700
N3···H3viii2.8500H7A···H62.3300
C1···C14ix3.576 (5)H7B···C62.7100
C5···C7ii3.590 (6)H7B···H62.2900
C6···C13ix3.344 (6)H7B···O2x2.9100
C7···O2x3.409 (6)H7C···C5x3.0900
C7···C5x3.590 (6)H7C···N3v2.9300
C8···O3vi3.188 (4)H8···H22.1900
C10···O1vi3.347 (4)H8···H62.4100
C11···N1vi3.431 (5)H8···O3vi2.4300
C12···O3xi3.418 (5)H11···N22.6700
C13···C6xii3.344 (6)H11···H22.2300
C14···C1xii3.576 (5)H12···C14xi3.0900
C5···H7Cii3.0900H12···O1viii2.6100
C6···H7A2.7800H13···O2vii2.6500
C6···H7B2.7100H14···O32.6400
C5—O2—C7117.5 (3)C10—C11—C12118.9 (3)
C2—O1—H1110 (3)N3—C12—C11124.1 (4)
N2—N1—C8115.9 (3)N3—C13—C14124.3 (4)
N1—N2—C9119.0 (3)C10—C14—C13118.4 (3)
C12—N3—C13116.4 (4)C2—C3—H3120.00
C9—N2—H2122 (3)C4—C3—H3120.00
N1—N2—H2119 (3)C3—C4—H4119.00
C2—C1—C6119.6 (3)C5—C4—H4119.00
C2—C1—C8122.2 (3)C1—C6—H6120.00
C6—C1—C8118.2 (3)C5—C6—H6120.00
O1—C2—C3118.8 (3)O2—C7—H7A109.00
O1—C2—C1122.4 (3)O2—C7—H7B109.00
C1—C2—C3118.8 (3)O2—C7—H7C109.00
C2—C3—C4120.7 (3)H7A—C7—H7B109.00
C3—C4—C5121.3 (4)H7A—C7—H7C109.00
C4—C5—C6119.0 (3)H7B—C7—H7C110.00
O2—C5—C4115.9 (3)N1—C8—H8120.00
O2—C5—C6125.1 (3)C1—C8—H8120.00
C1—C6—C5120.6 (3)C10—C11—H11121.00
N1—C8—C1120.9 (3)C12—C11—H11121.00
O3—C9—N2123.0 (3)N3—C12—H12118.00
O3—C9—C10121.9 (3)C11—C12—H12118.00
N2—C9—C10115.1 (2)N3—C13—H13118.00
C11—C10—C14117.9 (3)C14—C13—H13118.00
C9—C10—C11122.9 (3)C10—C14—H14121.00
C9—C10—C14119.1 (3)C13—C14—H14121.00
C7—O2—C5—C6−4.1 (6)O1—C2—C3—C4179.3 (4)
C7—O2—C5—C4175.8 (4)C2—C3—C4—C50.5 (6)
N2—N1—C8—C1−179.4 (3)C3—C4—C5—O2−179.3 (4)
C8—N1—N2—C9−167.1 (3)C3—C4—C5—C60.6 (6)
N1—N2—C9—C10−176.4 (3)O2—C5—C6—C1179.5 (3)
N1—N2—C9—O31.7 (5)C4—C5—C6—C1−0.4 (5)
C13—N3—C12—C111.5 (6)O3—C9—C10—C14−30.5 (4)
C12—N3—C13—C14−0.7 (6)O3—C9—C10—C11149.2 (3)
C8—C1—C6—C5178.8 (3)N2—C9—C10—C14147.6 (3)
C6—C1—C2—C31.8 (5)N2—C9—C10—C11−32.7 (4)
C2—C1—C6—C5−0.8 (5)C14—C10—C11—C12−1.8 (5)
C8—C1—C2—O11.3 (5)C9—C10—C11—C12178.5 (3)
C8—C1—C2—C3−177.8 (3)C9—C10—C14—C13−177.8 (3)
C6—C1—C2—O1−179.2 (3)C11—C10—C14—C132.5 (5)
C2—C1—C8—N13.7 (5)C10—C11—C12—N3−0.3 (6)
C6—C1—C8—N1−175.9 (3)N3—C13—C14—C10−1.4 (6)
C1—C2—C3—C4−1.6 (6)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.96 (4)1.80 (4)2.628 (4)142 (4)
N2—H2···O3vi0.88 (4)2.03 (4)2.872 (4)161 (4)
C8—H8···O3vi0.932.433.188 (4)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.96 (4)1.80 (4)2.628 (4)142 (4)
N2—H2⋯O3i0.88 (4)2.03 (4)2.872 (4)161 (4)
C8—H8⋯O3i0.932.433.188 (4)139

Symmetry code: (i) .

  4 in total

1.  In vitro advanced antimycobacterial screening of isoniazid-related hydrazones, hydrazides and cyanoboranes: part 14.

Authors:  Rosanna Maccari; Rosaria Ottanà; Maria Gabriella Vigorita
Journal:  Bioorg Med Chem Lett       Date:  2005-05-16       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and anti-mycobacterial activity of (E)-N'-(monosubstituted-benzylidene)isonicotinohydrazide derivatives.

Authors:  Maria Cristina da Silva Lourenço; Marcelle de Lima Ferreira; Marcus Vinícius Nora de Souza; Mônica Amado Peralta; Thatyana Rocha Alves Vasconcelos; Maria das Graças M O Henriques
Journal:  Eur J Med Chem       Date:  2007-09-02       Impact factor: 6.514

Review 4.  Antituberculosis drugs: ten years of research.

Authors:  Yves L Janin
Journal:  Bioorg Med Chem       Date:  2007-01-19       Impact factor: 3.641

  4 in total
  3 in total

1.  N'-[(E)-2-Hy-droxy-5-meth-oxy-benzyl-idene]pyridine-4-carbohydrazide monohydrate.

Authors:  M K Prasanna; M Sithambaresan; K Pradeepkumar; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-15

2.  (E)-1-(3-Eth-oxy-2-hy-droxy-benzyl-idene)thio-semicarbazide.

Authors:  Amir Adabi Ardakani; Hadi Kargar; Reza Kia; Muhammad Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

3.  Crystal structures of (E)-N'-(2-hy-droxy-5-methyl-benzyl-idene)isonicotinohydrazide and (E)-N'-(5-fluoro-2-hy-droxy-benzyl-idene)isonicotinohydrazide.

Authors:  Kittipong Chainok; Sureerat Makmuang; Filip Kielar
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-06-17
  3 in total

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