| Literature DB >> 24109410 |
M K Prasanna1, M Sithambaresan, K Pradeepkumar, M R Prathapachandra Kurup.
Abstract
In the title compound, C12H11N3O3·2H2O, the dihedral angle formed by the planes of the pyridine and the furan rings of the organic carbohydrazide mol-ecule is 4.66 (7)°. In the crystal, these mol-ecules form stacks along the b-axis direction, neighbouring mol-ecules within each stack being related by inversion and the shortest distance between the centroids of the pyridine and furan rings being 3.714 (1) Å. Mol-ecules from neighboring stacks are linked by pairs of N-H⋯O hydrogen bonds. The water mol-ecules fill the channels between the stacks being linked by O-H⋯O hydrogen bonds into helices along [010]. Besides this, water mol-ecules are involved in O-H⋯N and O-H⋯O hydrogen bonds with the carbohydrazide mol-ecules, thus forming a three-dimensional network, augmented by weak C-H⋯O interactions.Entities:
Year: 2013 PMID: 24109410 PMCID: PMC3793823 DOI: 10.1107/S1600536813020114
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H11N3O3·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3182 reflections |
| θ = 2.4–28.2° | |
| µ = 0.11 mm−1 | |
| β = 106.252 (7)° | Block, colorless |
| 0.50 × 0.25 × 0.25 mm | |
| Bruker Kappa APEXII CCD diffractometer | 3139 independent reflections |
| Radiation source: fine-focus sealed tube | 2308 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.33 pixels mm-1 | θmax = 28.0°, θmin = 3.1° |
| ω and φ scan | |
| Absorption correction: multi-scan ( | |
| 9681 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 3139 reflections | Δρmax = 0.23 e Å−3 |
| 206 parameters | Δρmin = −0.19 e Å−3 |
| 6 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0056 (14) |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| O2 | 0.65878 (8) | 0.90209 (13) | 1.02711 (5) | 0.0361 (2) | |
| N3 | 0.59249 (10) | 0.91380 (15) | 0.82424 (6) | 0.0352 (3) | |
| N1 | 0.17508 (11) | 0.89401 (16) | 0.49077 (6) | 0.0405 (3) | |
| N2 | 0.48334 (11) | 0.90481 (16) | 0.76219 (6) | 0.0340 (3) | |
| O3 | 0.74289 (10) | 1.09936 (16) | 1.18406 (6) | 0.0456 (3) | |
| O1 | 0.60410 (9) | 0.97315 (16) | 0.68198 (6) | 0.0459 (3) | |
| O1S | 0.05219 (11) | 0.82845 (18) | 0.33090 (6) | 0.0484 (3) | |
| O2S | 0.87042 (11) | 0.96561 (18) | 0.78948 (7) | 0.0553 (3) | |
| C1 | 0.40194 (13) | 0.8935 (2) | 0.55313 (8) | 0.0379 (3) | |
| H1 | 0.4862 | 0.8853 | 0.5486 | 0.046* | |
| C5 | 0.38137 (12) | 0.91494 (16) | 0.62455 (7) | 0.0291 (3) | |
| C4 | 0.25460 (13) | 0.9228 (2) | 0.62766 (8) | 0.0382 (3) | |
| H4 | 0.2358 | 0.9350 | 0.6748 | 0.046* | |
| C2 | 0.29770 (15) | 0.8844 (2) | 0.48870 (8) | 0.0427 (3) | |
| H2 | 0.3138 | 0.8708 | 0.4409 | 0.051* | |
| C3 | 0.15595 (13) | 0.9122 (2) | 0.55978 (8) | 0.0421 (3) | |
| H3 | 0.0706 | 0.9181 | 0.5626 | 0.051* | |
| C7 | 0.57428 (13) | 0.89688 (18) | 0.89043 (8) | 0.0353 (3) | |
| H7 | 0.4906 | 0.8833 | 0.8955 | 0.042* | |
| C8 | 0.68443 (13) | 0.89898 (17) | 0.95717 (7) | 0.0328 (3) | |
| C11 | 0.77674 (13) | 0.90344 (18) | 1.08159 (7) | 0.0348 (3) | |
| C10 | 0.87211 (14) | 0.8998 (2) | 1.04728 (9) | 0.0439 (4) | |
| H10 | 0.9610 | 0.8996 | 1.0719 | 0.053* | |
| C12 | 0.77600 (15) | 0.9152 (2) | 1.16286 (8) | 0.0441 (4) | |
| H12B | 0.7141 | 0.8236 | 1.1719 | 0.053* | |
| H12A | 0.8615 | 0.8810 | 1.1956 | 0.053* | |
| C9 | 0.81354 (14) | 0.8965 (2) | 0.96715 (9) | 0.0437 (3) | |
| H9 | 0.8559 | 0.8931 | 0.9286 | 0.052* | |
| C6 | 0.49926 (12) | 0.93343 (17) | 0.69202 (7) | 0.0304 (3) | |
| H1A | 0.067 (2) | 0.853 (3) | 0.3797 (9) | 0.089 (7)* | |
| H2' | 0.4086 (18) | 0.875 (2) | 0.7700 (10) | 0.058 (5)* | |
| H1B | −0.0138 (16) | 0.751 (3) | 0.3174 (11) | 0.077 (6)* | |
| H2B | 0.888 (2) | 1.017 (3) | 0.7503 (11) | 0.094 (8)* | |
| H3' | 0.808 (2) | 1.176 (3) | 1.1820 (11) | 0.075 (6)* | |
| H2A | 0.7875 (15) | 0.961 (3) | 0.7772 (12) | 0.083 (7)* |
| O2 | 0.0314 (5) | 0.0508 (5) | 0.0229 (5) | −0.0029 (4) | 0.0023 (4) | 0.0017 (4) |
| N3 | 0.0323 (6) | 0.0432 (6) | 0.0257 (6) | −0.0023 (4) | 0.0009 (5) | −0.0009 (4) |
| N1 | 0.0406 (7) | 0.0478 (7) | 0.0282 (6) | −0.0018 (5) | 0.0016 (5) | −0.0017 (5) |
| N2 | 0.0276 (6) | 0.0488 (6) | 0.0224 (6) | −0.0037 (5) | 0.0019 (5) | 0.0008 (4) |
| O3 | 0.0446 (6) | 0.0623 (7) | 0.0327 (6) | −0.0122 (5) | 0.0156 (5) | −0.0072 (4) |
| O1 | 0.0300 (5) | 0.0750 (7) | 0.0327 (5) | −0.0025 (5) | 0.0089 (4) | 0.0011 (5) |
| O1S | 0.0448 (6) | 0.0656 (7) | 0.0315 (6) | −0.0005 (5) | 0.0052 (5) | −0.0008 (5) |
| O2S | 0.0374 (6) | 0.0725 (8) | 0.0497 (7) | 0.0006 (5) | 0.0019 (5) | 0.0059 (6) |
| C1 | 0.0339 (7) | 0.0518 (8) | 0.0293 (7) | 0.0009 (6) | 0.0107 (6) | −0.0013 (5) |
| C5 | 0.0307 (6) | 0.0311 (6) | 0.0241 (6) | 0.0005 (5) | 0.0053 (5) | 0.0013 (4) |
| C4 | 0.0344 (7) | 0.0559 (8) | 0.0247 (7) | 0.0008 (6) | 0.0088 (5) | 0.0010 (5) |
| C2 | 0.0474 (8) | 0.0551 (8) | 0.0246 (7) | −0.0006 (6) | 0.0086 (6) | −0.0048 (6) |
| C3 | 0.0317 (7) | 0.0582 (9) | 0.0334 (8) | −0.0005 (6) | 0.0042 (6) | 0.0006 (6) |
| C7 | 0.0333 (7) | 0.0427 (7) | 0.0271 (7) | −0.0013 (5) | 0.0040 (5) | 0.0007 (5) |
| C8 | 0.0363 (7) | 0.0372 (6) | 0.0233 (6) | −0.0017 (5) | 0.0058 (5) | −0.0013 (5) |
| C11 | 0.0326 (7) | 0.0378 (7) | 0.0279 (7) | −0.0010 (5) | −0.0018 (5) | 0.0012 (5) |
| C10 | 0.0327 (7) | 0.0562 (9) | 0.0377 (8) | 0.0011 (6) | 0.0010 (6) | −0.0092 (6) |
| C12 | 0.0474 (8) | 0.0527 (8) | 0.0255 (7) | −0.0084 (6) | −0.0006 (6) | 0.0065 (6) |
| C9 | 0.0369 (7) | 0.0594 (9) | 0.0347 (8) | −0.0013 (6) | 0.0100 (6) | −0.0095 (6) |
| C6 | 0.0289 (6) | 0.0350 (6) | 0.0264 (6) | 0.0022 (5) | 0.0065 (5) | −0.0005 (5) |
| O2—C8 | 1.3634 (15) | C1—H1 | 0.9300 |
| O2—C11 | 1.3654 (15) | C5—C4 | 1.3745 (18) |
| N3—C7 | 1.2671 (17) | C5—C6 | 1.4928 (17) |
| N3—N2 | 1.3741 (15) | C4—C3 | 1.3763 (18) |
| N1—C3 | 1.3221 (17) | C4—H4 | 0.9300 |
| N1—C2 | 1.3248 (19) | C2—H2 | 0.9300 |
| N2—C6 | 1.3379 (16) | C3—H3 | 0.9300 |
| N2—H2' | 0.876 (18) | C7—C8 | 1.4294 (18) |
| O3—C12 | 1.4218 (18) | C7—H7 | 0.9300 |
| O3—H3' | 0.89 (2) | C8—C9 | 1.3427 (19) |
| O1—C6 | 1.2178 (15) | C11—C10 | 1.333 (2) |
| O1S—H1A | 0.865 (16) | C11—C12 | 1.4694 (19) |
| O1S—H1B | 0.872 (15) | C10—C9 | 1.405 (2) |
| O2S—H2B | 0.860 (16) | C10—H10 | 0.9300 |
| O2S—H2A | 0.853 (15) | C12—H12B | 0.9700 |
| C1—C2 | 1.3683 (19) | C12—H12A | 0.9700 |
| C1—C5 | 1.3737 (18) | C9—H9 | 0.9300 |
| C8—O2—C11 | 106.27 (10) | N3—C7—C8 | 118.91 (12) |
| C7—N3—N2 | 116.25 (11) | N3—C7—H7 | 120.5 |
| C3—N1—C2 | 116.53 (12) | C8—C7—H7 | 120.5 |
| C6—N2—N3 | 117.28 (11) | C9—C8—O2 | 110.02 (11) |
| C6—N2—H2' | 123.5 (12) | C9—C8—C7 | 133.47 (13) |
| N3—N2—H2' | 119.1 (12) | O2—C8—C7 | 116.50 (11) |
| C12—O3—H3' | 106.2 (12) | C10—C11—O2 | 109.88 (12) |
| H1A—O1S—H1B | 108.4 (18) | C10—C11—C12 | 132.98 (13) |
| H2B—O2S—H2A | 104.8 (19) | O2—C11—C12 | 117.09 (12) |
| C2—C1—C5 | 119.61 (12) | C11—C10—C9 | 107.34 (13) |
| C2—C1—H1 | 120.2 | C11—C10—H10 | 126.3 |
| C5—C1—H1 | 120.2 | C9—C10—H10 | 126.3 |
| C1—C5—C4 | 117.48 (12) | O3—C12—C11 | 112.99 (11) |
| C1—C5—C6 | 116.89 (11) | O3—C12—H12B | 109.0 |
| C4—C5—C6 | 125.60 (11) | C11—C12—H12B | 109.0 |
| C5—C4—C3 | 118.81 (12) | O3—C12—H12A | 109.0 |
| C5—C4—H4 | 120.6 | C11—C12—H12A | 109.0 |
| C3—C4—H4 | 120.6 | H12B—C12—H12A | 107.8 |
| N1—C2—C1 | 123.54 (13) | C8—C9—C10 | 106.49 (13) |
| N1—C2—H2 | 118.2 | C8—C9—H9 | 126.8 |
| C1—C2—H2 | 118.2 | C10—C9—H9 | 126.8 |
| N1—C3—C4 | 124.02 (13) | O1—C6—N2 | 122.77 (12) |
| N1—C3—H3 | 118.0 | O1—C6—C5 | 120.18 (11) |
| C4—C3—H3 | 118.0 | N2—C6—C5 | 117.05 (11) |
| C7—N3—N2—C6 | 176.19 (11) | C8—O2—C11—C12 | 177.41 (11) |
| C2—C1—C5—C4 | 1.17 (19) | O2—C11—C10—C9 | 0.14 (16) |
| C2—C1—C5—C6 | −177.08 (12) | C12—C11—C10—C9 | −177.28 (15) |
| C1—C5—C4—C3 | −1.08 (19) | C10—C11—C12—O3 | 103.43 (18) |
| C6—C5—C4—C3 | 177.01 (12) | O2—C11—C12—O3 | −73.84 (15) |
| C3—N1—C2—C1 | −0.4 (2) | O2—C8—C9—C10 | −0.54 (16) |
| C5—C1—C2—N1 | −0.4 (2) | C7—C8—C9—C10 | −179.70 (14) |
| C2—N1—C3—C4 | 0.5 (2) | C11—C10—C9—C8 | 0.25 (17) |
| C5—C4—C3—N1 | 0.2 (2) | N3—N2—C6—O1 | −2.72 (18) |
| N2—N3—C7—C8 | 178.04 (11) | N3—N2—C6—C5 | 177.35 (10) |
| C11—O2—C8—C9 | 0.62 (14) | C1—C5—C6—O1 | 16.96 (17) |
| C11—O2—C8—C7 | 179.94 (11) | C4—C5—C6—O1 | −161.14 (13) |
| N3—C7—C8—C9 | −8.1 (2) | C1—C5—C6—N2 | −163.11 (12) |
| N3—C7—C8—O2 | 172.79 (11) | C4—C5—C6—N2 | 18.79 (18) |
| C8—O2—C11—C10 | −0.46 (14) |
| H··· | ||||
| O2 | 0.85 (2) | 2.49 (2) | 3.2272 (17) | 146 (2) |
| O2 | 0.85 (2) | 2.22 (2) | 2.9648 (15) | 146 (2) |
| O3—H3′···O1 | 0.89 (2) | 1.90 (2) | 2.7937 (16) | 174.9 (18) |
| O2 | 0.86 (2) | 2.06 (2) | 2.9145 (18) | 171 (2) |
| O1 | 0.87 (2) | 1.94 (2) | 2.7924 (17) | 167 (2) |
| N2—H2′···O3iv | 0.876 (18) | 2.024 (18) | 2.8485 (16) | 156.3 (16) |
| O1 | 0.87 (2) | 2.03 (2) | 2.8501 (16) | 157 (2) |
| C4—H4···O3iv | 0.93 | 2.50 | 3.3897 (18) | 160 |
| C12—H12 | 0.97 | 2.43 | 3.3621 (19) | 162 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2 | 0.85 (2) | 2.49 (2) | 3.2272 (17) | 146 (2) |
| O2 | 0.85 (2) | 2.22 (2) | 2.9648 (15) | 146 (2) |
| O3—H3′⋯O1 | 0.89 (2) | 1.90 (2) | 2.7937 (16) | 174.9 (18) |
| O2 | 0.86 (2) | 2.06 (2) | 2.9145 (18) | 171 (2) |
| O1 | 0.87 (2) | 1.94 (2) | 2.7924 (17) | 167 (2) |
| N2—H2′⋯O3iv | 0.876 (18) | 2.024 (18) | 2.8485 (16) | 156.3 (16) |
| O1 | 0.87 (2) | 2.03 (2) | 2.8501 (16) | 157 (2) |
| C4—H4⋯O3iv | 0.93 | 2.50 | 3.3897 (18) | 160 |
| C12—H12 | 0.97 | 2.43 | 3.3621 (19) | 162 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .