Literature DB >> 24109410

N'-{(E)-[5-(Hy-droxy-meth-yl)furan-2-yl]methyl-idene}pyridine-4-carbohydrazide dihydrate.

M K Prasanna1, M Sithambaresan, K Pradeepkumar, M R Prathapachandra Kurup.   

Abstract

In the title compound, C12H11N3O3·2H2O, the dihedral angle formed by the planes of the pyridine and the furan rings of the organic carbohydrazide mol-ecule is 4.66 (7)°. In the crystal, these mol-ecules form stacks along the b-axis direction, neighbouring mol-ecules within each stack being related by inversion and the shortest distance between the centroids of the pyridine and furan rings being 3.714 (1) Å. Mol-ecules from neighboring stacks are linked by pairs of N-H⋯O hydrogen bonds. The water mol-ecules fill the channels between the stacks being linked by O-H⋯O hydrogen bonds into helices along [010]. Besides this, water mol-ecules are involved in O-H⋯N and O-H⋯O hydrogen bonds with the carbohydrazide mol-ecules, thus forming a three-dimensional network, augmented by weak C-H⋯O interactions.

Entities:  

Year:  2013        PMID: 24109410      PMCID: PMC3793823          DOI: 10.1107/S1600536813020114

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological properties of carbohydrazide and its derivatives, see: Rollas & Kucukguzel (2007 ▶); Bakir & Brown (2002 ▶). For the synthesis of related compounds, see: Sreeja & Kurup (2005 ▶). For related structures, see: Nair et al. (2012 ▶); Reshma et al. (2012 ▶); Prasanna et al. (2013 ▶).

Experimental

Crystal data

C12H11N3O3·2H2O M = 281.27 Monoclinic, a = 10.7020 (14) Å b = 7.0263 (8) Å c = 18.024 (3) Å β = 106.252 (7)° V = 1301.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.50 × 0.25 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.946, T max = 0.972 9681 measured reflections 3139 independent reflections 2308 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.114 S = 1.03 3139 reflections 206 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2010 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813020114/yk2097sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813020114/yk2097Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813020114/yk2097Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11N3O3·2H2OF(000) = 592
Mr = 281.27Dx = 1.436 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3182 reflections
a = 10.7020 (14) Åθ = 2.4–28.2°
b = 7.0263 (8) ŵ = 0.11 mm1
c = 18.024 (3) ÅT = 296 K
β = 106.252 (7)°Block, colorless
V = 1301.2 (3) Å30.50 × 0.25 × 0.25 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3139 independent reflections
Radiation source: fine-focus sealed tube2308 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 8.33 pixels mm-1θmax = 28.0°, θmin = 3.1°
ω and φ scanh = −14→14
Absorption correction: multi-scan (SADABS; Bruker, 2007)k = −9→9
Tmin = 0.946, Tmax = 0.972l = −23→16
9681 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.114w = 1/[σ2(Fo2) + (0.0564P)2 + 0.1806P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
3139 reflectionsΔρmax = 0.23 e Å3
206 parametersΔρmin = −0.19 e Å3
6 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0056 (14)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.65878 (8)0.90209 (13)1.02711 (5)0.0361 (2)
N30.59249 (10)0.91380 (15)0.82424 (6)0.0352 (3)
N10.17508 (11)0.89401 (16)0.49077 (6)0.0405 (3)
N20.48334 (11)0.90481 (16)0.76219 (6)0.0340 (3)
O30.74289 (10)1.09936 (16)1.18406 (6)0.0456 (3)
O10.60410 (9)0.97315 (16)0.68198 (6)0.0459 (3)
O1S0.05219 (11)0.82845 (18)0.33090 (6)0.0484 (3)
O2S0.87042 (11)0.96561 (18)0.78948 (7)0.0553 (3)
C10.40194 (13)0.8935 (2)0.55313 (8)0.0379 (3)
H10.48620.88530.54860.046*
C50.38137 (12)0.91494 (16)0.62455 (7)0.0291 (3)
C40.25460 (13)0.9228 (2)0.62766 (8)0.0382 (3)
H40.23580.93500.67480.046*
C20.29770 (15)0.8844 (2)0.48870 (8)0.0427 (3)
H20.31380.87080.44090.051*
C30.15595 (13)0.9122 (2)0.55978 (8)0.0421 (3)
H30.07060.91810.56260.051*
C70.57428 (13)0.89688 (18)0.89043 (8)0.0353 (3)
H70.49060.88330.89550.042*
C80.68443 (13)0.89898 (17)0.95717 (7)0.0328 (3)
C110.77674 (13)0.90344 (18)1.08159 (7)0.0348 (3)
C100.87211 (14)0.8998 (2)1.04728 (9)0.0439 (4)
H100.96100.89961.07190.053*
C120.77600 (15)0.9152 (2)1.16286 (8)0.0441 (4)
H12B0.71410.82361.17190.053*
H12A0.86150.88101.19560.053*
C90.81354 (14)0.8965 (2)0.96715 (9)0.0437 (3)
H90.85590.89310.92860.052*
C60.49926 (12)0.93343 (17)0.69202 (7)0.0304 (3)
H1A0.067 (2)0.853 (3)0.3797 (9)0.089 (7)*
H2'0.4086 (18)0.875 (2)0.7700 (10)0.058 (5)*
H1B−0.0138 (16)0.751 (3)0.3174 (11)0.077 (6)*
H2B0.888 (2)1.017 (3)0.7503 (11)0.094 (8)*
H3'0.808 (2)1.176 (3)1.1820 (11)0.075 (6)*
H2A0.7875 (15)0.961 (3)0.7772 (12)0.083 (7)*
U11U22U33U12U13U23
O20.0314 (5)0.0508 (5)0.0229 (5)−0.0029 (4)0.0023 (4)0.0017 (4)
N30.0323 (6)0.0432 (6)0.0257 (6)−0.0023 (4)0.0009 (5)−0.0009 (4)
N10.0406 (7)0.0478 (7)0.0282 (6)−0.0018 (5)0.0016 (5)−0.0017 (5)
N20.0276 (6)0.0488 (6)0.0224 (6)−0.0037 (5)0.0019 (5)0.0008 (4)
O30.0446 (6)0.0623 (7)0.0327 (6)−0.0122 (5)0.0156 (5)−0.0072 (4)
O10.0300 (5)0.0750 (7)0.0327 (5)−0.0025 (5)0.0089 (4)0.0011 (5)
O1S0.0448 (6)0.0656 (7)0.0315 (6)−0.0005 (5)0.0052 (5)−0.0008 (5)
O2S0.0374 (6)0.0725 (8)0.0497 (7)0.0006 (5)0.0019 (5)0.0059 (6)
C10.0339 (7)0.0518 (8)0.0293 (7)0.0009 (6)0.0107 (6)−0.0013 (5)
C50.0307 (6)0.0311 (6)0.0241 (6)0.0005 (5)0.0053 (5)0.0013 (4)
C40.0344 (7)0.0559 (8)0.0247 (7)0.0008 (6)0.0088 (5)0.0010 (5)
C20.0474 (8)0.0551 (8)0.0246 (7)−0.0006 (6)0.0086 (6)−0.0048 (6)
C30.0317 (7)0.0582 (9)0.0334 (8)−0.0005 (6)0.0042 (6)0.0006 (6)
C70.0333 (7)0.0427 (7)0.0271 (7)−0.0013 (5)0.0040 (5)0.0007 (5)
C80.0363 (7)0.0372 (6)0.0233 (6)−0.0017 (5)0.0058 (5)−0.0013 (5)
C110.0326 (7)0.0378 (7)0.0279 (7)−0.0010 (5)−0.0018 (5)0.0012 (5)
C100.0327 (7)0.0562 (9)0.0377 (8)0.0011 (6)0.0010 (6)−0.0092 (6)
C120.0474 (8)0.0527 (8)0.0255 (7)−0.0084 (6)−0.0006 (6)0.0065 (6)
C90.0369 (7)0.0594 (9)0.0347 (8)−0.0013 (6)0.0100 (6)−0.0095 (6)
C60.0289 (6)0.0350 (6)0.0264 (6)0.0022 (5)0.0065 (5)−0.0005 (5)
O2—C81.3634 (15)C1—H10.9300
O2—C111.3654 (15)C5—C41.3745 (18)
N3—C71.2671 (17)C5—C61.4928 (17)
N3—N21.3741 (15)C4—C31.3763 (18)
N1—C31.3221 (17)C4—H40.9300
N1—C21.3248 (19)C2—H20.9300
N2—C61.3379 (16)C3—H30.9300
N2—H2'0.876 (18)C7—C81.4294 (18)
O3—C121.4218 (18)C7—H70.9300
O3—H3'0.89 (2)C8—C91.3427 (19)
O1—C61.2178 (15)C11—C101.333 (2)
O1S—H1A0.865 (16)C11—C121.4694 (19)
O1S—H1B0.872 (15)C10—C91.405 (2)
O2S—H2B0.860 (16)C10—H100.9300
O2S—H2A0.853 (15)C12—H12B0.9700
C1—C21.3683 (19)C12—H12A0.9700
C1—C51.3737 (18)C9—H90.9300
C8—O2—C11106.27 (10)N3—C7—C8118.91 (12)
C7—N3—N2116.25 (11)N3—C7—H7120.5
C3—N1—C2116.53 (12)C8—C7—H7120.5
C6—N2—N3117.28 (11)C9—C8—O2110.02 (11)
C6—N2—H2'123.5 (12)C9—C8—C7133.47 (13)
N3—N2—H2'119.1 (12)O2—C8—C7116.50 (11)
C12—O3—H3'106.2 (12)C10—C11—O2109.88 (12)
H1A—O1S—H1B108.4 (18)C10—C11—C12132.98 (13)
H2B—O2S—H2A104.8 (19)O2—C11—C12117.09 (12)
C2—C1—C5119.61 (12)C11—C10—C9107.34 (13)
C2—C1—H1120.2C11—C10—H10126.3
C5—C1—H1120.2C9—C10—H10126.3
C1—C5—C4117.48 (12)O3—C12—C11112.99 (11)
C1—C5—C6116.89 (11)O3—C12—H12B109.0
C4—C5—C6125.60 (11)C11—C12—H12B109.0
C5—C4—C3118.81 (12)O3—C12—H12A109.0
C5—C4—H4120.6C11—C12—H12A109.0
C3—C4—H4120.6H12B—C12—H12A107.8
N1—C2—C1123.54 (13)C8—C9—C10106.49 (13)
N1—C2—H2118.2C8—C9—H9126.8
C1—C2—H2118.2C10—C9—H9126.8
N1—C3—C4124.02 (13)O1—C6—N2122.77 (12)
N1—C3—H3118.0O1—C6—C5120.18 (11)
C4—C3—H3118.0N2—C6—C5117.05 (11)
C7—N3—N2—C6176.19 (11)C8—O2—C11—C12177.41 (11)
C2—C1—C5—C41.17 (19)O2—C11—C10—C90.14 (16)
C2—C1—C5—C6−177.08 (12)C12—C11—C10—C9−177.28 (15)
C1—C5—C4—C3−1.08 (19)C10—C11—C12—O3103.43 (18)
C6—C5—C4—C3177.01 (12)O2—C11—C12—O3−73.84 (15)
C3—N1—C2—C1−0.4 (2)O2—C8—C9—C10−0.54 (16)
C5—C1—C2—N1−0.4 (2)C7—C8—C9—C10−179.70 (14)
C2—N1—C3—C40.5 (2)C11—C10—C9—C80.25 (17)
C5—C4—C3—N10.2 (2)N3—N2—C6—O1−2.72 (18)
N2—N3—C7—C8178.04 (11)N3—N2—C6—C5177.35 (10)
C11—O2—C8—C90.62 (14)C1—C5—C6—O116.96 (17)
C11—O2—C8—C7179.94 (11)C4—C5—C6—O1−161.14 (13)
N3—C7—C8—C9−8.1 (2)C1—C5—C6—N2−163.11 (12)
N3—C7—C8—O2172.79 (11)C4—C5—C6—N218.79 (18)
C8—O2—C11—C10−0.46 (14)
D—H···AD—HH···AD···AD—H···A
O2S—H2A···N30.85 (2)2.49 (2)3.2272 (17)146 (2)
O2S—H2A···O10.85 (2)2.22 (2)2.9648 (15)146 (2)
O3—H3′···O1Si0.89 (2)1.90 (2)2.7937 (16)174.9 (18)
O2S—H2B···O1Sii0.86 (2)2.06 (2)2.9145 (18)171 (2)
O1S—H1B···O2Siii0.87 (2)1.94 (2)2.7924 (17)167 (2)
N2—H2′···O3iv0.876 (18)2.024 (18)2.8485 (16)156.3 (16)
O1S—H1A···N10.87 (2)2.03 (2)2.8501 (16)157 (2)
C4—H4···O3iv0.932.503.3897 (18)160
C12—H12B···O1v0.972.433.3621 (19)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2S—H2A⋯N30.85 (2)2.49 (2)3.2272 (17)146 (2)
O2S—H2A⋯O10.85 (2)2.22 (2)2.9648 (15)146 (2)
O3—H3′⋯O1S i 0.89 (2)1.90 (2)2.7937 (16)174.9 (18)
O2S—H2B⋯O1S ii 0.86 (2)2.06 (2)2.9145 (18)171 (2)
O1S—H1B⋯O2S iii 0.87 (2)1.94 (2)2.7924 (17)167 (2)
N2—H2′⋯O3iv 0.876 (18)2.024 (18)2.8485 (16)156.3 (16)
O1S—H1A⋯N10.87 (2)2.03 (2)2.8501 (16)157 (2)
C4—H4⋯O3iv 0.932.503.3897 (18)160
C12—H12B⋯O1v 0.972.433.3621 (19)162

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and spectral characterization of ternary complexes of oxovanadium(IV) containing some acid hydrazones and 2,2'-bipyridine.

Authors:  P B Sreeja; M R Prathapachandra Kurup
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2005-01-01       Impact factor: 4.098

Review 3.  Biological activities of hydrazone derivatives.

Authors:  Sevim Rollas; S Güniz Küçükgüzel
Journal:  Molecules       Date:  2007-08-17       Impact factor: 4.411

4.  N'-[(E)-2-Hy-droxy-5-meth-oxy-benzyl-idene]pyridine-4-carbohydrazide monohydrate.

Authors:  M K Prasanna; M Sithambaresan; K Pradeepkumar; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-15

5.  N'-[(E)-(3-Fluoro-pyridin-2-yl)methyl-idene]benzohydrazide monohydrate.

Authors:  Yamuna Nair; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-15

6.  N'-[(E)-4-Benz-yloxy-2-hy-droxy-benzyl-idene]benzohydrazide.

Authors:  P R Reshma; M Sithambaresan; M R Prathapachandra Kurup
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-25
  6 in total

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