Literature DB >> 22412468

catena-Poly[ammonium (cadmium-tri-μ-thio-cyanato-κS:N;κN:S)-1,4,10,13,16-hexa-oxa-cyclo-octa-decane (1/1)].

V Ramesh, K Rajarajan, K Sendil Kumar, A Subashini, M Nizammohideen.   

Abstract

In the title compound, {(NH(4))[Cd(NCS)(3)]·C(12)H(24)O(6)}(n), the Cd(2+) ion, the ammonium cation, one of the SCN(-) ligands and the macrocycle are located on mirror planes. The thiocyanate anions act as bridging ligands between the Cd(II) ions, leading to a polymeric chain arrangement extending along [001] around a twofold screw axis. The ammonium ions are contained within the bowl of the macrocycle via extensive N-H⋯O hydrogen bonding.

Entities:  

Year:  2012        PMID: 22412468      PMCID: PMC3297278          DOI: 10.1107/S1600536812004898

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a singly bridged cadmium thio­cyanate complex, see: Bose et al. (2004 ▶). For a triply bridged cadmium thio­cyanate complex, see: Chen et al. (2002 ▶). For an S-bound terminal thio­cyanate cadmium complex, see: Nfor et al. (2006 ▶). For polymeric structures of complexes, see: Lobana et al. (2008 ▶). For the structures and properties of cadmium compounds, see: Gu et al. (2011 ▶); Zheng et al. (2004 ▶); Rajesh et al. (2004 ▶). For bond lengths and angles of related compounds, see: Nawaz et al. (2010 ▶).

Experimental

Crystal data

(NH4)[Cd(NCS)3]·C12H24O6 M = 568.99 Orthorhombic, a = 14.7568 (6) Å b = 15.4378 (6) Å c = 10.6383 (5) Å V = 2423.54 (18) Å3 Z = 4 Mo Kα radiation μ = 1.20 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.716, T max = 0.796 11323 measured reflections 2483 independent reflections 2445 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.013 wR(F 2) = 0.034 S = 1.09 2483 reflections 154 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.36 e Å−3 Absolute structure: Flack (1983 ▶), 7607 Friedel pairs Flack parameter: 0.005 (15) Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶), PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812004898/zb2021sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812004898/zb2021Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(NH4)[Cd(NCS)3]·C12H24O6F(000) = 1160
Mr = 568.99Dx = 1.559 Mg m3
Orthorhombic, Cmc21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2c -2Cell parameters from 5280 reflections
a = 14.7568 (6) Åθ = 2.6–26.7°
b = 15.4378 (6) ŵ = 1.20 mm1
c = 10.6383 (5) ÅT = 293 K
V = 2423.54 (18) Å3Block, colourless
Z = 40.30 × 0.25 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer2483 independent reflections
Radiation source: fine-focus sealed tube2445 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
ω and φ scanθmax = 26.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −18→18
Tmin = 0.716, Tmax = 0.796k = −19→19
11323 measured reflectionsl = −13→13
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.013w = 1/[σ2(Fo2) + (0.020P)2 + 0.1189P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.034(Δ/σ)max = 0.003
S = 1.09Δρmax = 0.20 e Å3
2483 reflectionsΔρmin = −0.36 e Å3
154 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
5 restraintsExtinction coefficient: 0.0058 (2)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 7607 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.005 (15)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.61632 (10)1.06679 (10)0.72484 (14)0.0337 (3)
C20.50000.87710 (13)0.7689 (2)0.0339 (4)
C30.9203 (2)0.92459 (19)1.0905 (3)0.0905 (9)
H3A0.92050.96481.16060.109*
H3B0.91770.86621.12400.109*
C40.83962 (17)0.94095 (17)1.0097 (4)0.0885 (10)
H4A0.78510.93821.06040.106*
H4B0.84360.99850.97360.106*
C50.76317 (15)0.89705 (16)0.8297 (3)0.0811 (8)
H5A0.77090.95450.79450.097*
H5B0.70620.89590.87510.097*
C60.76078 (16)0.83248 (19)0.7272 (3)0.0845 (9)
H6A0.75960.77450.76210.101*
H6B0.70650.84050.67700.101*
C70.8399 (2)0.78484 (18)0.5498 (3)0.0923 (10)
H7A0.78470.79080.50100.111*
H7B0.84300.72590.58110.111*
C80.9199 (2)0.80317 (17)0.4690 (2)0.0921 (10)
H8A0.91850.76640.39520.110*
H8B0.91860.86310.44150.110*
N10.60575 (11)1.03455 (9)0.62874 (16)0.0496 (4)
N20.50000.91401 (12)0.86273 (19)0.0454 (5)
O11.00000.93509 (16)1.0190 (3)0.0776 (8)
O20.83461 (10)0.87912 (10)0.91271 (18)0.0692 (4)
O30.83851 (11)0.84297 (10)0.65100 (18)0.0703 (4)
O41.00000.78737 (15)0.5382 (2)0.0742 (7)
N31.00000.80499 (15)0.8089 (2)0.0476 (5)
Cd10.50000.971763 (8)0.494929 (17)0.03587 (6)
S10.63319 (3)1.11267 (3)0.86256 (4)0.04216 (10)
S20.50000.82400 (4)0.63561 (5)0.04418 (14)
H3E0.9497 (12)0.8303 (18)0.836 (3)0.096 (10)*
H3C1.00000.7522 (12)0.844 (3)0.076 (11)*
H3D1.00000.817 (4)0.7264 (16)0.13 (2)*
U11U22U33U12U13U23
C10.0298 (7)0.0389 (8)0.0324 (7)−0.0048 (6)0.0026 (5)0.0036 (6)
C20.0389 (11)0.0289 (9)0.0339 (12)0.0000.0000.0067 (9)
C30.094 (2)0.0801 (18)0.097 (2)0.0021 (14)0.0308 (17)−0.0239 (16)
C40.0702 (14)0.0716 (13)0.124 (3)0.0100 (11)0.035 (2)−0.025 (2)
C50.0397 (11)0.0731 (14)0.130 (3)0.0164 (10)0.0147 (13)0.0227 (16)
C60.0411 (11)0.0820 (16)0.130 (3)−0.0007 (11)−0.0205 (13)0.0190 (17)
C70.097 (2)0.0739 (16)0.106 (2)0.0214 (15)−0.0549 (19)−0.0204 (15)
C80.149 (3)0.0678 (14)0.0592 (19)0.0343 (17)−0.0297 (17)−0.0138 (11)
N10.0539 (9)0.0612 (9)0.0337 (8)−0.0148 (6)0.0025 (7)−0.0026 (7)
N20.0682 (13)0.0370 (9)0.0309 (9)0.0000.0000.0015 (9)
O10.0683 (13)0.0780 (14)0.086 (2)0.0000.000−0.0160 (14)
O20.0498 (8)0.0570 (8)0.1009 (13)0.0127 (6)0.0144 (8)0.0011 (8)
O30.0628 (9)0.0609 (8)0.0872 (12)0.0032 (7)−0.0184 (8)0.0017 (8)
O40.0963 (18)0.0630 (13)0.0632 (14)0.0000.000−0.0012 (10)
N30.0385 (12)0.0456 (12)0.0587 (15)0.0000.0000.0006 (10)
Cd10.04531 (9)0.03708 (8)0.02522 (8)0.0000.000−0.00054 (7)
S10.0465 (2)0.0454 (2)0.0346 (2)−0.00946 (16)0.00023 (17)−0.00481 (17)
S20.0649 (4)0.0355 (3)0.0322 (3)0.0000.000−0.0024 (2)
C1—N11.148 (2)C7—C81.488 (4)
C1—S11.6463 (15)C7—H7A0.9700
C2—N21.149 (3)C7—H7B0.9700
C2—S21.638 (2)C8—O41.413 (3)
C3—O11.410 (3)C8—H8A0.9700
C3—C41.490 (5)C8—H8B0.9700
C3—H3A0.9700N1—Cd12.3241 (16)
C3—H3B0.9700N2—Cd1i2.256 (2)
C4—O21.408 (4)O1—C3ii1.410 (3)
C4—H4A0.9700O4—C8ii1.413 (3)
C4—H4B0.9700N3—H3E0.888 (10)
C5—O21.403 (3)N3—H3C0.897 (10)
C5—C61.478 (4)N3—H3D0.898 (10)
C5—H5A0.9700Cd1—N2iii2.256 (2)
C5—H5B0.9700Cd1—N1iv2.3241 (16)
C6—O31.414 (3)Cd1—S22.7283 (6)
C6—H6A0.9700Cd1—S1iii2.7468 (4)
C6—H6B0.9700Cd1—S1v2.7468 (4)
C7—O31.402 (3)S1—Cd1i2.7468 (4)
N1—C1—S1179.10 (16)O4—C8—C7109.28 (19)
N2—C2—S2179.69 (19)O4—C8—H8A109.8
O1—C3—C4109.6 (3)C7—C8—H8A109.8
O1—C3—H3A109.7O4—C8—H8B109.8
C4—C3—H3A109.7C7—C8—H8B109.8
O1—C3—H3B109.7H8A—C8—H8B108.3
C4—C3—H3B109.7C1—N1—Cd1144.86 (14)
H3A—C3—H3B108.2C2—N2—Cd1i158.30 (17)
O2—C4—C3110.48 (19)C3ii—O1—C3113.1 (4)
O2—C4—H4A109.6C5—O2—C4111.54 (19)
C3—C4—H4A109.6C7—O3—C6112.2 (2)
O2—C4—H4B109.6C8—O4—C8ii113.4 (3)
C3—C4—H4B109.6H3E—N3—H3C105 (2)
H4A—C4—H4B108.1H3E—N3—H3D103 (3)
O2—C5—C6110.46 (18)H3C—N3—H3D127 (5)
O2—C5—H5A109.6N2iii—Cd1—N193.20 (5)
C6—C5—H5A109.6N2iii—Cd1—N1iv93.20 (5)
O2—C5—H5B109.6N1—Cd1—N1iv84.36 (8)
C6—C5—H5B109.6N2iii—Cd1—S2174.69 (5)
H5A—C5—H5B108.1N1—Cd1—S290.73 (4)
O3—C6—C5109.0 (2)N1iv—Cd1—S290.73 (4)
O3—C6—H6A109.9N2iii—Cd1—S1iii92.94 (4)
C5—C6—H6A109.9N1—Cd1—S1iii172.93 (4)
O3—C6—H6B109.9N1iv—Cd1—S1iii91.80 (4)
C5—C6—H6B109.9S2—Cd1—S1iii83.363 (12)
H6A—C6—H6B108.3N2iii—Cd1—S1v92.94 (4)
O3—C7—C8109.5 (2)N1—Cd1—S1v91.80 (4)
O3—C7—H7A109.8N1iv—Cd1—S1v172.93 (4)
C8—C7—H7A109.8S2—Cd1—S1v83.363 (12)
O3—C7—H7B109.8S1iii—Cd1—S1v91.373 (19)
C8—C7—H7B109.8C1—S1—Cd1i98.27 (5)
H7A—C7—H7B108.2C2—S2—Cd193.24 (7)
O1—C3—C4—O263.7 (3)C1—N1—Cd1—N2iii107.3 (2)
O2—C5—C6—O3−67.4 (2)C1—N1—Cd1—N1iv14.4 (2)
O3—C7—C8—O464.2 (3)C1—N1—Cd1—S2−76.3 (2)
C4—C3—O1—C3ii177.23 (15)C1—N1—Cd1—S1v−159.7 (2)
C6—C5—O2—C4178.6 (2)N1—Cd1—S2—C242.19 (4)
C3—C4—O2—C5−175.5 (2)N1iv—Cd1—S2—C2−42.19 (4)
C8—C7—O3—C6176.27 (19)S1iii—Cd1—S2—C2−133.916 (9)
C5—C6—O3—C7−178.75 (19)S1v—Cd1—S2—C2133.916 (9)
C7—C8—O4—C8ii−179.93 (16)
D—H···AD—HH···AD···AD—H···A
N3—H3E···O20.89 (1)2.03 (1)2.9130 (19)174 (3)
N3—H3D···O40.90 (1)2.05 (3)2.892 (3)155 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3E⋯O20.89 (1)2.03 (1)2.9130 (19)174 (3)
N3—H3D⋯O40.90 (1)2.05 (3)2.892 (3)155 (5)
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4.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-04

2.  Crystal structure of bis-(thio-cyanato-κS)bis-(thio-urea-κS)mercury(II).

Authors:  A Baskaran; K Rajarajan; M NizamMohideen; P Sagayaraj
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-17

3.  catena-Poly[[bis-(μ(2)-1,4,7,10,13,16-hexa-oxacyclo-octa-deca-ne)dipotassium]-μ(2)-iodido-(iodidocadmium)-di-μ(2)-iodido-(iodidocadmium)-μ(2)-iodido].

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4.  Diammonium tetra-kis-(iso-thio-cyanato)-zincate-1,4,10,13,16-hexa-oxa-cyclo-octa-deca-ne-water (1/2/1).

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  4 in total

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