| Literature DB >> 22412468 |
V Ramesh, K Rajarajan, K Sendil Kumar, A Subashini, M Nizammohideen.
Abstract
In the title compound, {(NH(4))[Cd(NCS)(3)]·C(12)H(24)O(6)}(n), the Cd(2+) ion, the ammonium cation, one of the SCN(-) ligands and the macrocycle are located on mirror planes. The thiocyanate anions act as bridging ligands between the Cd(II) ions, leading to a polymeric chain arrangement extending along [001] around a twofold screw axis. The ammonium ions are contained within the bowl of the macrocycle via extensive N-H⋯O hydrogen bonding.Entities:
Year: 2012 PMID: 22412468 PMCID: PMC3297278 DOI: 10.1107/S1600536812004898
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| (NH4)[Cd(NCS)3]·C12H24O6 | |
| Orthorhombic, | Mo |
| Hall symbol: C 2c -2 | Cell parameters from 5280 reflections |
| θ = 2.6–26.7° | |
| µ = 1.20 mm−1 | |
| Block, colourless | |
| 0.30 × 0.25 × 0.20 mm |
| Bruker Kappa APEXII CCD diffractometer | 2483 independent reflections |
| Radiation source: fine-focus sealed tube | 2445 reflections with |
| Graphite monochromator | |
| ω and φ scan | θmax = 26.0°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 11323 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max = 0.003 | |
| Δρmax = 0.20 e Å−3 | |
| 2483 reflections | Δρmin = −0.36 e Å−3 |
| 154 parameters | Extinction correction: |
| 5 restraints | Extinction coefficient: 0.0058 (2) |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 7607 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: 0.005 (15) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.61632 (10) | 1.06679 (10) | 0.72484 (14) | 0.0337 (3) | |
| C2 | 0.5000 | 0.87710 (13) | 0.7689 (2) | 0.0339 (4) | |
| C3 | 0.9203 (2) | 0.92459 (19) | 1.0905 (3) | 0.0905 (9) | |
| H3A | 0.9205 | 0.9648 | 1.1606 | 0.109* | |
| H3B | 0.9177 | 0.8662 | 1.1240 | 0.109* | |
| C4 | 0.83962 (17) | 0.94095 (17) | 1.0097 (4) | 0.0885 (10) | |
| H4A | 0.7851 | 0.9382 | 1.0604 | 0.106* | |
| H4B | 0.8436 | 0.9985 | 0.9736 | 0.106* | |
| C5 | 0.76317 (15) | 0.89705 (16) | 0.8297 (3) | 0.0811 (8) | |
| H5A | 0.7709 | 0.9545 | 0.7945 | 0.097* | |
| H5B | 0.7062 | 0.8959 | 0.8751 | 0.097* | |
| C6 | 0.76078 (16) | 0.83248 (19) | 0.7272 (3) | 0.0845 (9) | |
| H6A | 0.7596 | 0.7745 | 0.7621 | 0.101* | |
| H6B | 0.7065 | 0.8405 | 0.6770 | 0.101* | |
| C7 | 0.8399 (2) | 0.78484 (18) | 0.5498 (3) | 0.0923 (10) | |
| H7A | 0.7847 | 0.7908 | 0.5010 | 0.111* | |
| H7B | 0.8430 | 0.7259 | 0.5811 | 0.111* | |
| C8 | 0.9199 (2) | 0.80317 (17) | 0.4690 (2) | 0.0921 (10) | |
| H8A | 0.9185 | 0.7664 | 0.3952 | 0.110* | |
| H8B | 0.9186 | 0.8631 | 0.4415 | 0.110* | |
| N1 | 0.60575 (11) | 1.03455 (9) | 0.62874 (16) | 0.0496 (4) | |
| N2 | 0.5000 | 0.91401 (12) | 0.86273 (19) | 0.0454 (5) | |
| O1 | 1.0000 | 0.93509 (16) | 1.0190 (3) | 0.0776 (8) | |
| O2 | 0.83461 (10) | 0.87912 (10) | 0.91271 (18) | 0.0692 (4) | |
| O3 | 0.83851 (11) | 0.84297 (10) | 0.65100 (18) | 0.0703 (4) | |
| O4 | 1.0000 | 0.78737 (15) | 0.5382 (2) | 0.0742 (7) | |
| N3 | 1.0000 | 0.80499 (15) | 0.8089 (2) | 0.0476 (5) | |
| Cd1 | 0.5000 | 0.971763 (8) | 0.494929 (17) | 0.03587 (6) | |
| S1 | 0.63319 (3) | 1.11267 (3) | 0.86256 (4) | 0.04216 (10) | |
| S2 | 0.5000 | 0.82400 (4) | 0.63561 (5) | 0.04418 (14) | |
| H3E | 0.9497 (12) | 0.8303 (18) | 0.836 (3) | 0.096 (10)* | |
| H3C | 1.0000 | 0.7522 (12) | 0.844 (3) | 0.076 (11)* | |
| H3D | 1.0000 | 0.817 (4) | 0.7264 (16) | 0.13 (2)* |
| C1 | 0.0298 (7) | 0.0389 (8) | 0.0324 (7) | −0.0048 (6) | 0.0026 (5) | 0.0036 (6) |
| C2 | 0.0389 (11) | 0.0289 (9) | 0.0339 (12) | 0.000 | 0.000 | 0.0067 (9) |
| C3 | 0.094 (2) | 0.0801 (18) | 0.097 (2) | 0.0021 (14) | 0.0308 (17) | −0.0239 (16) |
| C4 | 0.0702 (14) | 0.0716 (13) | 0.124 (3) | 0.0100 (11) | 0.035 (2) | −0.025 (2) |
| C5 | 0.0397 (11) | 0.0731 (14) | 0.130 (3) | 0.0164 (10) | 0.0147 (13) | 0.0227 (16) |
| C6 | 0.0411 (11) | 0.0820 (16) | 0.130 (3) | −0.0007 (11) | −0.0205 (13) | 0.0190 (17) |
| C7 | 0.097 (2) | 0.0739 (16) | 0.106 (2) | 0.0214 (15) | −0.0549 (19) | −0.0204 (15) |
| C8 | 0.149 (3) | 0.0678 (14) | 0.0592 (19) | 0.0343 (17) | −0.0297 (17) | −0.0138 (11) |
| N1 | 0.0539 (9) | 0.0612 (9) | 0.0337 (8) | −0.0148 (6) | 0.0025 (7) | −0.0026 (7) |
| N2 | 0.0682 (13) | 0.0370 (9) | 0.0309 (9) | 0.000 | 0.000 | 0.0015 (9) |
| O1 | 0.0683 (13) | 0.0780 (14) | 0.086 (2) | 0.000 | 0.000 | −0.0160 (14) |
| O2 | 0.0498 (8) | 0.0570 (8) | 0.1009 (13) | 0.0127 (6) | 0.0144 (8) | 0.0011 (8) |
| O3 | 0.0628 (9) | 0.0609 (8) | 0.0872 (12) | 0.0032 (7) | −0.0184 (8) | 0.0017 (8) |
| O4 | 0.0963 (18) | 0.0630 (13) | 0.0632 (14) | 0.000 | 0.000 | −0.0012 (10) |
| N3 | 0.0385 (12) | 0.0456 (12) | 0.0587 (15) | 0.000 | 0.000 | 0.0006 (10) |
| Cd1 | 0.04531 (9) | 0.03708 (8) | 0.02522 (8) | 0.000 | 0.000 | −0.00054 (7) |
| S1 | 0.0465 (2) | 0.0454 (2) | 0.0346 (2) | −0.00946 (16) | 0.00023 (17) | −0.00481 (17) |
| S2 | 0.0649 (4) | 0.0355 (3) | 0.0322 (3) | 0.000 | 0.000 | −0.0024 (2) |
| C1—N1 | 1.148 (2) | C7—C8 | 1.488 (4) |
| C1—S1 | 1.6463 (15) | C7—H7A | 0.9700 |
| C2—N2 | 1.149 (3) | C7—H7B | 0.9700 |
| C2—S2 | 1.638 (2) | C8—O4 | 1.413 (3) |
| C3—O1 | 1.410 (3) | C8—H8A | 0.9700 |
| C3—C4 | 1.490 (5) | C8—H8B | 0.9700 |
| C3—H3A | 0.9700 | N1—Cd1 | 2.3241 (16) |
| C3—H3B | 0.9700 | N2—Cd1i | 2.256 (2) |
| C4—O2 | 1.408 (4) | O1—C3ii | 1.410 (3) |
| C4—H4A | 0.9700 | O4—C8ii | 1.413 (3) |
| C4—H4B | 0.9700 | N3—H3E | 0.888 (10) |
| C5—O2 | 1.403 (3) | N3—H3C | 0.897 (10) |
| C5—C6 | 1.478 (4) | N3—H3D | 0.898 (10) |
| C5—H5A | 0.9700 | Cd1—N2iii | 2.256 (2) |
| C5—H5B | 0.9700 | Cd1—N1iv | 2.3241 (16) |
| C6—O3 | 1.414 (3) | Cd1—S2 | 2.7283 (6) |
| C6—H6A | 0.9700 | Cd1—S1iii | 2.7468 (4) |
| C6—H6B | 0.9700 | Cd1—S1v | 2.7468 (4) |
| C7—O3 | 1.402 (3) | S1—Cd1i | 2.7468 (4) |
| N1—C1—S1 | 179.10 (16) | O4—C8—C7 | 109.28 (19) |
| N2—C2—S2 | 179.69 (19) | O4—C8—H8A | 109.8 |
| O1—C3—C4 | 109.6 (3) | C7—C8—H8A | 109.8 |
| O1—C3—H3A | 109.7 | O4—C8—H8B | 109.8 |
| C4—C3—H3A | 109.7 | C7—C8—H8B | 109.8 |
| O1—C3—H3B | 109.7 | H8A—C8—H8B | 108.3 |
| C4—C3—H3B | 109.7 | C1—N1—Cd1 | 144.86 (14) |
| H3A—C3—H3B | 108.2 | C2—N2—Cd1i | 158.30 (17) |
| O2—C4—C3 | 110.48 (19) | C3ii—O1—C3 | 113.1 (4) |
| O2—C4—H4A | 109.6 | C5—O2—C4 | 111.54 (19) |
| C3—C4—H4A | 109.6 | C7—O3—C6 | 112.2 (2) |
| O2—C4—H4B | 109.6 | C8—O4—C8ii | 113.4 (3) |
| C3—C4—H4B | 109.6 | H3E—N3—H3C | 105 (2) |
| H4A—C4—H4B | 108.1 | H3E—N3—H3D | 103 (3) |
| O2—C5—C6 | 110.46 (18) | H3C—N3—H3D | 127 (5) |
| O2—C5—H5A | 109.6 | N2iii—Cd1—N1 | 93.20 (5) |
| C6—C5—H5A | 109.6 | N2iii—Cd1—N1iv | 93.20 (5) |
| O2—C5—H5B | 109.6 | N1—Cd1—N1iv | 84.36 (8) |
| C6—C5—H5B | 109.6 | N2iii—Cd1—S2 | 174.69 (5) |
| H5A—C5—H5B | 108.1 | N1—Cd1—S2 | 90.73 (4) |
| O3—C6—C5 | 109.0 (2) | N1iv—Cd1—S2 | 90.73 (4) |
| O3—C6—H6A | 109.9 | N2iii—Cd1—S1iii | 92.94 (4) |
| C5—C6—H6A | 109.9 | N1—Cd1—S1iii | 172.93 (4) |
| O3—C6—H6B | 109.9 | N1iv—Cd1—S1iii | 91.80 (4) |
| C5—C6—H6B | 109.9 | S2—Cd1—S1iii | 83.363 (12) |
| H6A—C6—H6B | 108.3 | N2iii—Cd1—S1v | 92.94 (4) |
| O3—C7—C8 | 109.5 (2) | N1—Cd1—S1v | 91.80 (4) |
| O3—C7—H7A | 109.8 | N1iv—Cd1—S1v | 172.93 (4) |
| C8—C7—H7A | 109.8 | S2—Cd1—S1v | 83.363 (12) |
| O3—C7—H7B | 109.8 | S1iii—Cd1—S1v | 91.373 (19) |
| C8—C7—H7B | 109.8 | C1—S1—Cd1i | 98.27 (5) |
| H7A—C7—H7B | 108.2 | C2—S2—Cd1 | 93.24 (7) |
| O1—C3—C4—O2 | 63.7 (3) | C1—N1—Cd1—N2iii | 107.3 (2) |
| O2—C5—C6—O3 | −67.4 (2) | C1—N1—Cd1—N1iv | 14.4 (2) |
| O3—C7—C8—O4 | 64.2 (3) | C1—N1—Cd1—S2 | −76.3 (2) |
| C4—C3—O1—C3ii | 177.23 (15) | C1—N1—Cd1—S1v | −159.7 (2) |
| C6—C5—O2—C4 | 178.6 (2) | N1—Cd1—S2—C2 | 42.19 (4) |
| C3—C4—O2—C5 | −175.5 (2) | N1iv—Cd1—S2—C2 | −42.19 (4) |
| C8—C7—O3—C6 | 176.27 (19) | S1iii—Cd1—S2—C2 | −133.916 (9) |
| C5—C6—O3—C7 | −178.75 (19) | S1v—Cd1—S2—C2 | 133.916 (9) |
| C7—C8—O4—C8ii | −179.93 (16) |
| H··· | ||||
| N3—H3 | 0.89 (1) | 2.03 (1) | 2.9130 (19) | 174 (3) |
| N3—H3 | 0.90 (1) | 2.05 (3) | 2.892 (3) | 155 (5) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.89 (1) | 2.03 (1) | 2.9130 (19) | 174 (3) |
| N3—H3 | 0.90 (1) | 2.05 (3) | 2.892 (3) | 155 (5) |