Literature DB >> 23770974

A comparative study of the catalysis of peptide bond formation by oxide surfaces.

Jean-François Lambert1, Maguy Jaber, Thomas Georgelin, Lorenzo Stievano.   

Abstract

It is well-known that amino acids deposited on some inorganic oxides undergo peptidic condensation. It is seldom realised however that a large diversity of behaviours can be observed in such systems. Here we use the apparently simple case of glycine-non-porous silica as a reference system, in which glycine (Gly) dimerisation to diketopiperazine (DKP) is easy to evidence, especially when using TG in combination with NMR. We then proceed to compare it with other AA deposited on the same support on the one hand, with Gly deposited on other mineral surfaces on the other hand. In a final section, we provide more detailed mechanistic information on the glycine condensation process on silica, including kinetic data and a (13)C solid-state NMR follow up of the species at various stages of thermal condensation. The best mechanism to rationalise these data involves a crucial step of isomerisation from zwitterion to neutral glycine, and the participation of several distinct types of surface sites probably consisting of silanol ensembles.

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Year:  2013        PMID: 23770974     DOI: 10.1039/c3cp51282g

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  8 in total

1.  Formation of activated biomolecules by condensation on mineral surfaces--a comparison of peptide bond formation and phosphate condensation.

Authors:  Thomas Georgelin; Maguy Jaber; Houssein Bazzi; Jean-François Lambert
Journal:  Orig Life Evol Biosph       Date:  2013-11-26       Impact factor: 1.950

2.  Glycine Polymerization on Oxide Minerals.

Authors:  Norio Kitadai; Hiroyuki Oonishi; Koichiro Umemoto; Tomohiro Usui; Keisuke Fukushi; Satoru Nakashima
Journal:  Orig Life Evol Biosph       Date:  2016-07-29       Impact factor: 1.950

3.  Nano-pulsed discharge plasma-induced abiotic oligopeptide formation from diketopiperazine.

Authors:  Mitsuru Sasaki; Yuji Miyagawa; Kouki Nonaka; Ryota Miyanomae; Armando T Quitain; Tetsuya Kida; Motonobu Goto; Tetsuo Honma; Tomohiro Furusato; Kunio Kawamura
Journal:  Naturwissenschaften       Date:  2022-06-10

4.  Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids.

Authors:  Dylan T Holden; Nicolás M Morato; R Graham Cooks
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-03       Impact factor: 12.779

5.  Formation of Diastereoisomeric Piperazine-2,5-dione from DL-Alanine in the Presence of Olivine and Water.

Authors:  Shigeshi Fuchida; Hiroshi Naraoka; Harue Masuda
Journal:  Orig Life Evol Biosph       Date:  2016-04-12       Impact factor: 1.950

Review 6.  Tracing the Primordial Chemical Life of Glycine: A Review from Quantum Chemical Simulations.

Authors:  Albert Rimola; Nadia Balucani; Cecilia Ceccarelli; Piero Ugliengo
Journal:  Int J Mol Sci       Date:  2022-04-12       Impact factor: 6.208

7.  Size-Dependent Affinity of Glycine and Its Short Oligomers to Pyrite Surface: A Model for Prebiotic Accumulation of Amino Acid Oligomers on a Mineral Surface.

Authors:  Rehana Afrin; Narangerel Ganbaatar; Masashi Aono; H James Cleaves Ii; Taka-Aki Yano; Masahiko Hara
Journal:  Int J Mol Sci       Date:  2018-01-25       Impact factor: 5.923

8.  Prebiotic Peptide Bond Formation Through Amino Acid Phosphorylation. Insights from Quantum Chemical Simulations.

Authors:  Berta Martínez-Bachs; Albert Rimola
Journal:  Life (Basel)       Date:  2019-09-16
  8 in total

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