Literature DB >> 27473494

Glycine Polymerization on Oxide Minerals.

Norio Kitadai1, Hiroyuki Oonishi2, Koichiro Umemoto3, Tomohiro Usui3, Keisuke Fukushi2, Satoru Nakashima4.   

Abstract

It has long been suggested that mineral surfaces played an important role in peptide bond formation on the primitive Earth. However, it remains unclear which mineral species was key to the prebiotic processes. This is because great discrepancies exist among the reported catalytic efficiencies of minerals for amino acid polymerizations, owing to mutually different experimental conditions. This study examined polymerization of glycine (Gly) on nine oxide minerals (amorphous silica, quartz, α-alumina and γ-alumina, anatase, rutile, hematite, magnetite, and forsterite) using identical preparation, heating, and analytical procedures. Results showed that a rutile surface is the most effective site for Gly polymerization in terms of both amounts and lengths of Gly polymers synthesized. The catalytic efficiency decreased as rutile > anatase > γ-alumina > forsterite > α- alumina > magnetite > hematite > quartz > amorphous silica. Based on reported molecular-level information for adsorption of Gly on these minerals, polymerization activation was inferred to have arisen from deprotonation of the NH3+ group of adsorbed Gly to the nucleophilic NH2 group, and from withdrawal of electron density from the carboxyl carbon to the surface metal ions. The orientation of adsorbed Gly on minerals is also a factor influencing the Gly reactivity. The examination of Gly-mineral interactions under identical experimental conditions has enabled the direct comparison of various minerals' catalytic efficiencies and has made discussion of polymerization mechanisms and their relative influences possible Further systematic investigations using the approach reported herein (which are expected to be fruitful) combined with future microscopic surface analyses will elucidate the role of minerals in the process of abiotic peptide bond formation.

Entities:  

Keywords:  Amino acid; Astrobiology; Chemical evolution; Peptide; Protein

Mesh:

Substances:

Year:  2016        PMID: 27473494     DOI: 10.1007/s11084-016-9516-z

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  31 in total

Review 1.  Peptides and the origin of life.

Authors:  B M Rode
Journal:  Peptides       Date:  1999       Impact factor: 3.750

2.  Adsorption of proline and glycine on the TiO2(110) surface: a density functional theory study.

Authors:  Ralf Tonner
Journal:  Chemphyschem       Date:  2010-04-06       Impact factor: 3.102

Review 3.  A perspective on the role of minerals in prebiotic synthesis.

Authors:  Martin Schoonen; Alexander Smirnov; Corey Cohn
Journal:  Ambio       Date:  2004-12       Impact factor: 5.129

4.  Did life originate from a global chemical reactor?

Authors:  E E Stüeken; R E Anderson; J S Bowman; W J Brazelton; J Colangelo-Lillis; A D Goldman; S M Som; J A Baross
Journal:  Geobiology       Date:  2013-01-18       Impact factor: 4.407

5.  Adsorption and thermal condensation mechanisms of amino acids on oxide supports. 1. Glycine on silica.

Authors:  Ming Meng; Lorenzo Stievano; Jean-François Lambert
Journal:  Langmuir       Date:  2004-02-03       Impact factor: 3.882

6.  Activated alumina as an energy source for peptide bond formation: consequences for mineral-mediated prebiotic processes.

Authors:  J Bujdák; B M Rode
Journal:  Amino Acids       Date:  2001       Impact factor: 3.520

7.  Thermodynamic prediction of glycine polymerization as a function of temperature and pH consistent with experimentally obtained results.

Authors:  Norio Kitadai
Journal:  J Mol Evol       Date:  2014-03-21       Impact factor: 2.395

8.  Adsorption of small biological molecules on silica from diluted aqueous solutions: quantitative characterization and implications to the Bernal's hypothesis.

Authors:  V A Basiuk; E G Khil'chevskaya
Journal:  Orig Life Evol Biosph       Date:  1995-08       Impact factor: 1.950

9.  Properties of synthetic ferrihydrite as an amino acid adsorbent and a promoter of peptide bond formation.

Authors:  G Matrajt; D Blanot
Journal:  Amino Acids       Date:  2003-10-17       Impact factor: 3.520

10.  Bonding and structure of glycine on ordered Al2O3 film surfaces.

Authors:  G Tzvetkov; G Koller; Y Zubavichus; O Fuchs; M B Casu; C Heske; E Umbach; M Grunze; M G Ramsey; F P Netzer
Journal:  Langmuir       Date:  2004-11-23       Impact factor: 3.882

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  5 in total

1.  The Effect of Goethites on the Polymerization of Glycine and Alanine Under Prebiotic Chemistry Conditions.

Authors:  João Paulo T Baú; Cristine E A Carneiro; Antônio Carlos S da Costa; Daniel F Valezi; Eduardo di Mauro; Eduardo Pilau; Dimas A M Zaia
Journal:  Orig Life Evol Biosph       Date:  2022-01-22       Impact factor: 1.120

Review 2.  Mineral Surface-Templated Self-Assembling Systems: Case Studies from Nanoscience and Surface Science towards Origins of Life Research.

Authors:  Richard J Gillams; Tony Z Jia
Journal:  Life (Basel)       Date:  2018-05-08

3.  Environmental control programs the emergence of distinct functional ensembles from unconstrained chemical reactions.

Authors:  Andrew J Surman; Marc Rodriguez-Garcia; Yousef M Abul-Haija; Geoffrey J T Cooper; Piotr S Gromski; Rebecca Turk-MacLeod; Margaret Mullin; Cole Mathis; Sara I Walker; Leroy Cronin
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-06       Impact factor: 11.205

4.  Prebiotic Peptide Bond Formation Through Amino Acid Phosphorylation. Insights from Quantum Chemical Simulations.

Authors:  Berta Martínez-Bachs; Albert Rimola
Journal:  Life (Basel)       Date:  2019-09-16

5.  Silica Precipitation in a Wet-Dry Cycling Hot Spring Simulation Chamber.

Authors:  Andrew Gangidine; Jeff R Havig; Jeffrey S Hannon; Andrew D Czaja
Journal:  Life (Basel)       Date:  2020-01-14
  5 in total

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