Literature DB >> 35687146

Nano-pulsed discharge plasma-induced abiotic oligopeptide formation from diketopiperazine.

Mitsuru Sasaki1,2, Yuji Miyagawa3, Kouki Nonaka3, Ryota Miyanomae3, Armando T Quitain4, Tetsuya Kida3, Motonobu Goto5, Tetsuo Honma6, Tomohiro Furusato7, Kunio Kawamura8.   

Abstract

Conventional oligopeptide synthesis techniques involve environmentally harmful procedures and materials. In addition, the efficient accumulation of oligopeptides under Hadean Earth environments regarding the origin of life remains still unclear. In these processes, the formation of diketopiperazine is a big issue due to the strong inhibition for further elongation beyond dipeptides. Hydrothermal media enables environmentally friendly oligopeptide synthesis. However, hydrothermal oligopeptide synthesis produces large amounts of diketopiperazine (DKP), due to its thermodynamic stability. DKP inhibits dipeptide elongation and also constitutes an inhibitory pathway in conventional oligopeptide synthesis. Here, we show an efficient pathway for oligopeptide formation using a specially designed experimental setup to run both thermal and non-thermal discharge plasma, generated by nano-pulsed electric discharge with 16-23 kV voltage and 300-430 A current within ca. 500 ns. DKP (14%) was converted to dipeptides and higher oligopeptides in an aqueous solution containing alanine-DKP at pH 4.5, after 20 min of 50 pps thermal plasma irradiation. This is the first study to report efficient oligopeptide synthesis in aqueous medium using nano-pulsed plasma (with thermal plasma being more efficient than non-thermal plasma) via DKP ring-opening. This unexpected finding is implicative to evaluate the pathway how the oligopeptides could have accumulated in the primitive Earth with high-energy plasma sources such as thunder as well as to facilitate the green synthesis of oligopeptides.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Diketopiperazine; Lightning strike; Nano-pulsed discharge plasma; Oligopeptide; Primitive Earth

Mesh:

Substances:

Year:  2022        PMID: 35687146     DOI: 10.1007/s00114-022-01803-y

Source DB:  PubMed          Journal:  Naturwissenschaften        ISSN: 0028-1042


  18 in total

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2.  One-step formation of oligopeptide-like molecules from Glu and Asp in hydrothermal environments.

Authors:  Kunio Kawamura; Masanori Shimahashi
Journal:  Naturwissenschaften       Date:  2008-02-06

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Authors:  Junko Ishizaki; Yoshihiro Waki; Tatsuo Takahashi-Nishioka; Koichi Yokogawa; Ken-Ichi Miyamoto
Journal:  J Bone Miner Metab       Date:  2008-11-19       Impact factor: 2.626

4.  Decomposition of L-valine under nonthermal dielectric barrier discharge plasma.

Authors:  Yingying Li; Arben Kojtari; Gary Friedman; Ari D Brooks; Alex Fridman; Hai-Feng Ji
Journal:  J Phys Chem B       Date:  2014-02-04       Impact factor: 2.991

5.  Mineral-enhanced hydrothermal oligopeptide formation at the second time scale.

Authors:  Kunio Kawamura; Hitoshi Takeya; Takao Kushibe; Yuka Koizumi
Journal:  Astrobiology       Date:  2011-06-14       Impact factor: 4.335

6.  Autocatalytic synthesis of oligoglycine in a simulated submarine hydrothermal system.

Authors:  E Imai; H Honda; K Hatori; K Matsuno
Journal:  Orig Life Evol Biosph       Date:  1999-05       Impact factor: 1.950

7.  Consecutive elongation of alanine oligopeptides at the second time range under hydrothermal conditions using a microflow reactor system.

Authors:  Kunio Kawamura; Teruyuki Nishi; Tomofumi Sakiyama
Journal:  J Am Chem Soc       Date:  2005-01-19       Impact factor: 15.419

8.  A comparative study of the catalysis of peptide bond formation by oxide surfaces.

Authors:  Jean-François Lambert; Maguy Jaber; Thomas Georgelin; Lorenzo Stievano
Journal:  Phys Chem Chem Phys       Date:  2013-08-28       Impact factor: 3.676

9.  Solid-phase peptide synthesis: from standard procedures to the synthesis of difficult sequences.

Authors:  Irene Coin; Michael Beyermann; Michael Bienert
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

10.  Dechlorination and decomposition of chloroform induced by glow discharge plasma in an aqueous solution.

Authors:  Yongjun Liu; John C Crittenden; Lei Wang; Panliang Liu
Journal:  J Hazard Mater       Date:  2016-01-12       Impact factor: 10.588

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