Literature DB >> 36191178

Aqueous microdroplets enable abiotic synthesis and chain extension of unique peptide isomers from free amino acids.

Dylan T Holden1, Nicolás M Morato1, R Graham Cooks1.   

Abstract

Amide bond formation, the essential condensation reaction underlying peptide synthesis, is hindered in aqueous systems by the thermodynamic constraints associated with dehydration. This represents a key difficulty for the widely held view that prebiotic chemical evolution leading to the formation of the first biomolecules occurred in an oceanic environment. Recent evidence for the acceleration of chemical reactions at droplet interfaces led us to explore aqueous amino acid droplet chemistry. We report the formation of dipeptide isomer ions from free glycine or L-alanine at the air-water interface of aqueous microdroplets emanating from a single spray source (with or without applied potential) during their flight toward the inlet of a mass spectrometer. The proposed isomeric dipeptide ion is an oxazolidinone that takes fully covalent and ion-neutral complex forms. This structure is consistent with observed fragmentation patterns and its conversion to authentic dipeptide ions upon gentle collisions and for its formation from authentic dipeptides at ultra-low concentrations. It also rationalizes the results of droplet fusion experiments that show that the dipeptide isomer facilitates additional amide bond formation events, yielding authentic tri- through hexapeptides. We propose that the interface of aqueous microdroplets serves as a drying surface that shifts the equilibrium between free amino acids in favor of dehydration via stabilization of the dipeptide isomers. These findings offer a possible solution to the water paradox of biopolymer synthesis in prebiotic chemistry.

Entities:  

Keywords:  air–water interface; dipeptide; mass spectrometry; origin of life; prebiotic chemistry

Mesh:

Substances:

Year:  2022        PMID: 36191178      PMCID: PMC9586328          DOI: 10.1073/pnas.2212642119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  77 in total

Review 1.  Polypeptides and 100 years of chemistry of alpha-amino acid N-carboxyanhydrides.

Authors:  Hans R Kricheldorf
Journal:  Angew Chem Int Ed Engl       Date:  2006-09-04       Impact factor: 15.336

Review 2.  Synthesis of polypeptides by ring-opening polymerization of α-amino acid N-carboxyanhydrides.

Authors:  Jianjun Cheng; Timothy J Deming
Journal:  Top Curr Chem       Date:  2012

Review 3.  Organic Reactions in Microdroplets: Reaction Acceleration Revealed by Mass Spectrometry.

Authors:  Xin Yan; Ryan M Bain; R Graham Cooks
Journal:  Angew Chem Int Ed Engl       Date:  2016-10-10       Impact factor: 15.336

4.  Peptide Isomerization is Suppressed at the Air-Water Interface.

Authors:  Aditya N Singh; David T Limmer
Journal:  J Phys Chem Lett       Date:  2022-01-11       Impact factor: 6.475

5.  Spontaneous Oxidation of Aromatic Sulfones to Sulfonic Acids in Microdroplets.

Authors:  Lingqi Qiu; Michael D Psimos; R Graham Cooks
Journal:  J Am Soc Mass Spectrom       Date:  2022-03-21       Impact factor: 3.262

6.  Syntheses of Isoquinoline and Substituted Quinolines in Charged Microdroplets.

Authors:  Shibdas Banerjee; Richard N Zare
Journal:  Angew Chem Int Ed Engl       Date:  2015-10-09       Impact factor: 15.336

7.  Abiotic synthesis of purine and pyrimidine ribonucleosides in aqueous microdroplets.

Authors:  Inho Nam; Hong Gil Nam; Richard N Zare
Journal:  Proc Natl Acad Sci U S A       Date:  2017-12-18       Impact factor: 11.205

8.  Spontaneous generation of hydrogen peroxide from aqueous microdroplets.

Authors:  Jae Kyoo Lee; Katherine L Walker; Hyun Soo Han; Jooyoun Kang; Fritz B Prinz; Robert M Waymouth; Hong Gil Nam; Richard N Zare
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-26       Impact factor: 11.205

9.  Accelerated synthesis of energetic precursor cage compounds using confined volume systems.

Authors:  Hilary M Brown; Karan R Doppalapudi; Patrick W Fedick
Journal:  Sci Rep       Date:  2021-12-16       Impact factor: 4.996

Review 10.  Acceleration of reaction in charged microdroplets.

Authors:  Jae Kyoo Lee; Shibdas Banerjee; Hong Gil Nam; Richard N Zare
Journal:  Q Rev Biophys       Date:  2015-11       Impact factor: 5.318

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