Literature DB >> 26590302

Regulation of maintenance DNA methylation via histone ubiquitylation.

Atsuya Nishiyama1, Luna Yamaguchi1, Makoto Nakanishi2.   

Abstract

DNA methylation is one of the most stable but dynamically regulated epigenetic marks that act as determinants of cell fates during embryonic development through regulation of various forms of gene expression. DNA methylation patterns must be faithfully propagated throughout successive cell divisions in order to maintain cell-specific function. We have recently demonstrated that Uhrf1-dependent ubiquitylation of histone H3 at lysine 23 is critical for Dnmt1 recruitment to DNA replication sites, which catalyzes the conversion of hemi-methylated DNA to fully methylated DNA. In this review, we provide an overview of recent progress in understanding the mechanism underlying maintenance DNA methylation.
© The Authors 2015. Published by Oxford University Press on behalf of the Japanese Biochemical Society. All rights reserved.

Entities:  

Keywords:  DNA methylation; DNA methyltransferase 1, histone; Ubiquitin; cell cycle

Mesh：

Substances：

Year:  2015        PMID： 26590302      PMCID： PMC4882649          DOI： 10.1093/jb/mvv113

Source DB:  PubMed          Journal:  J Biochem        ISSN： 0021-924X            Impact factor:   3.387


  59 in total

1.  DNA modification mechanisms and gene activity during development.

Authors:  R Holliday; J E Pugh
Journal:  Science       Date:  1975-01-24       Impact factor: 47.728

2.  GCN5: a supervisor in all-inclusive control of vertebrate cell cycle progression through transcription regulation of various cell cycle-related genes.

Authors:  Hidehiko Kikuchi; Yasunari Takami; Tatsuo Nakayama
Journal:  Gene       Date:  2005-02-28       Impact factor: 3.688

3.  M phase phosphorylation of the epigenetic regulator UHRF1 regulates its physical association with the deubiquitylase USP7 and stability.

Authors:  Honghui Ma; Hao Chen; Xue Guo; Zhentian Wang; Mathew E Sowa; Lijuan Zheng; Shibin Hu; Pingyao Zeng; Rui Guo; Jianbo Diao; Fei Lan; J Wade Harper; Yujiang Geno Shi; Yanhui Xu; Yang Shi
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-12       Impact factor: 11.205

4.  Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation.

Authors:  Da Jia; Renata Z Jurkowska; Xing Zhang; Albert Jeltsch; Xiaodong Cheng
Journal:  Nature       Date:  2007-08-22       Impact factor: 49.962

5.  Cloning and mapping of Np95 gene which encodes a novel nuclear protein associated with cell proliferation.

Authors:  A Fujimori; Y Matsuda; Y Takemoto; Y Hashimoto; E Kubo; R Araki; R Fukumura; K Mita; K Tatsumi; M Muto
Journal:  Mamm Genome       Date:  1998-12       Impact factor: 2.957

6.  UHRF1 targets DNMT1 for DNA methylation through cooperative binding of hemi-methylated DNA and methylated H3K9.

Authors:  Xiaoli Liu; Qinqin Gao; Pishun Li; Qian Zhao; Jiqin Zhang; Jiwen Li; Haruhiko Koseki; Jiemin Wong
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

7.  Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism.

Authors:  Kyohei Arita; Mariko Ariyoshi; Hidehito Tochio; Yusuke Nakamura; Masahiro Shirakawa
Journal:  Nature       Date:  2008-09-03       Impact factor: 49.962

8.  Identification and characterization of propionylation at histone H3 lysine 23 in mammalian cells.

Authors:  Bo Liu; Yihui Lin; Agus Darwanto; Xuehui Song; Guoliang Xu; Kangling Zhang
Journal:  J Biol Chem       Date:  2009-10-03       Impact factor: 5.157

9.  The interaction of the SRA domain of ICBP90 with a novel domain of DNMT1 is involved in the regulation of VEGF gene expression.

Authors:  M Achour; X Jacq; P Rondé; M Alhosin; C Charlot; T Chataigneau; M Jeanblanc; M Macaluso; A Giordano; A D Hughes; V B Schini-Kerth; C Bronner
Journal:  Oncogene       Date:  2007-10-15       Impact factor: 9.867

10.  Genome-wide phosphoacetylation of histone H3 at Drosophila enhancers and promoters.

Authors:  Wendy A Kellner; Edward Ramos; Kevin Van Bortle; Naomi Takenaka; Victor G Corces
Journal:  Genome Res       Date:  2012-04-16       Impact factor: 9.043
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  16 in total

1.  Alternative splicing and allosteric regulation modulate the chromatin binding of UHRF1.

Authors:  Maria Tauber; Sarah Kreuz; Alexander Lemak; Papita Mandal; Zhadyra Yerkesh; Alaguraj Veluchamy; Bothayna Al-Gashgari; Abrar Aljahani; Lorena V Cortés-Medina; Dulat Azhibek; Lixin Fan; Michelle S Ong; Shili Duan; Scott Houliston; Cheryl H Arrowsmith; Wolfgang Fischle
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

2.  Dnmt3b Methylates DNA by a Noncooperative Mechanism, and Its Activity Is Unaffected by Manipulations at the Predicted Dimer Interface.

Authors:  Allison B Norvil; Christopher J Petell; Lama Alabdi; Lanchen Wu; Sandra Rossie; Humaira Gowher
Journal:  Biochemistry       Date:  2016-11-04       Impact factor: 3.162

3.  Interferon regulatory factor 1 and a variant of heterogeneous nuclear ribonucleoprotein L coordinately silence the gene for adhesion protein CEACAM1.

Authors:  Kenneth J Dery; Craig Silver; Lu Yang; John E Shively
Journal:  J Biol Chem       Date:  2018-05-02       Impact factor: 5.157

4.  Establishment of a high-throughput detection system for DNA demethylating agents.

Authors:  Eriko Okochi-Takada; Naoko Hattori; Akihiro Ito; Tohru Niwa; Mika Wakabayashi; Kana Kimura; Minoru Yoshida; Toshikazu Ushijima
Journal:  Epigenetics       Date:  2018-03-05       Impact factor: 4.528

Review 5.  Deciphering the genetic code of DNA methylation.

Authors:  Mengchi Wang; Vu Ngo; Wei Wang
Journal:  Brief Bioinform       Date:  2021-09-02       Impact factor: 11.622

Review 6.  The multi-functionality of UHRF1: epigenome maintenance and preservation of genome integrity.

Authors:  Monica Mancini; Elena Magnani; Filippo Macchi; Ian Marc Bonapace
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

7.  p38 inhibition provides anti-DNA virus immunity by regulation of USP21 phosphorylation and STING activation.

Authors:  Yunfei Chen; Lufan Wang; Jiali Jin; Yi Luan; Cong Chen; Yu Li; Hongshang Chu; Xinbo Wang; Guanghong Liao; Yue Yu; Hongqi Teng; Yanming Wang; Weijuan Pan; Lan Fang; Lujian Liao; Zhengfan Jiang; Xin Ge; Bin Li; Ping Wang
Journal:  J Exp Med       Date:  2017-03-02       Impact factor: 14.307

8.  Thymoquinone challenges UHRF1 to commit auto-ubiquitination: a key event for apoptosis induction in cancer cells.

Authors:  Abdulkhaleg Ibrahim; Mahmoud Alhosin; Christophe Papin; Khalid Ouararhni; Ziad Omran; Mazin A Zamzami; Abdulrahman Labeed Al-Malki; Hani Choudhry; Yves Mély; Ali Hamiche; Marc Mousli; Christian Bronner
Journal:  Oncotarget       Date:  2018-06-19

9.  Cytoplasmic cleavage of DPPA3 is required for intracellular trafficking and cleavage-stage development in mice.

Authors:  Seung-Wook Shin; Edgar John Vogt; Maria Jimenez-Movilla; Boris Baibakov; Jurrien Dean
Journal:  Nat Commun       Date:  2017-11-21       Impact factor: 14.919

10.  Targeting EP4 downstream c-Jun through ERK1/2-mediated reduction of DNMT1 reveals novel mechanism of solamargine-inhibited growth of lung cancer cells.

Authors:  Yuqing Chen; Qing Tang; Qian Xiao; LiJun Yang; Swei S Hann
Journal:  J Cell Mol Med       Date:  2016-09-13       Impact factor: 5.310
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