Literature DB >> 23750044

Lack of discrimination against non-proteinogenic amino acid norvaline by elongation factor Tu from Escherichia coli.

Nevena Cvetesic1, Irena Akmacic, Ita Gruic-Sovulj.   

Abstract

The GTP-bound form of elongation factor Tu (EF-Tu) brings aminoacylated tRNAs (aa-tRNA) to the A-site of the ribosome. EF-Tu binds all cognate elongator aa-tRNAs with highly similar affinities, and its weaker or tighter binding of misacylated tRNAs may discourage their participation in translation. Norvaline (Nva) is a non-proteinogenic amino acid that is activated and transferred to tRNALeu by leucyl-tRNA synthetase (LeuRS). No notable accumulation of Nva-tRNALeu has been observed in vitro, because of the efficient post-transfer hydrolytic editing activity of LeuRS. However, incorporation of norvaline into proteins in place of leucine does occur under certain conditions in vivo. Here we show that EF-Tu binds Nva-tRNALeu and Leu-tRNALeu with similar affinities, and that Nva-tRNALeu and Leu-tRNALeu dissociate from EF-Tu at comparable rates. The inability of EF-Tu to discriminate against norvaline may have driven evolution of highly efficient LeuRS editing as the main quality control mechanism against misincorporation of norvaline into proteins.

Entities:  

Keywords:  EF-Tu; aminoacyl-tRNA synthetases; leucyl-tRNA synthetase; mistranslation; non-proteinogenic amino acids; norvaline

Year:  2013        PMID: 23750044      PMCID: PMC3675784          DOI: 10.5562/cca2173

Source DB:  PubMed          Journal:  Croat Chem Acta        ISSN: 0011-1643            Impact factor:   0.887


  38 in total

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3.  Amino acid specificity in translation.

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5.  Tuning the affinity of aminoacyl-tRNA to elongation factor Tu for optimal decoding.

Authors:  Jared M Schrader; Stephen J Chapman; Olke C Uhlenbeck
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-14       Impact factor: 11.205

6.  Purification of aminoacyl-tRNA by affinity chromatography on immobilized Thermus thermophilus EF-Tu.GTP.

Authors:  S Ribeiro; S Nock; M Sprinzl
Journal:  Anal Biochem       Date:  1995-07-01       Impact factor: 3.365

7.  Loss of editing activity during the evolution of mitochondrial phenylalanyl-tRNA synthetase.

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8.  The tRNA specificity of Thermus thermophilus EF-Tu.

Authors:  Haruichi Asahara; Olke C Uhlenbeck
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-12       Impact factor: 11.205

9.  Phenylalanyl-tRNA synthetase editing defects result in efficient mistranslation of phenylalanine codons as tyrosine.

Authors:  Jiqiang Ling; Srujana S Yadavalli; Michael Ibba
Journal:  RNA       Date:  2007-09-05       Impact factor: 4.942

10.  Many of the conserved nucleotides of tRNA(Phe) are not essential for ternary complex formation and peptide elongation.

Authors:  I A Nazarenko; K M Harrington; O C Uhlenbeck
Journal:  EMBO J       Date:  1994-05-15       Impact factor: 11.598

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  6 in total

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2.  Negative catalysis by the editing domain of class I aminoacyl-tRNA synthetases.

Authors:  Igor Zivkovic; Kate Ivkovic; Nevena Cvetesic; Aleksandra Marsavelski; Ita Gruic-Sovulj
Journal:  Nucleic Acids Res       Date:  2022-04-22       Impact factor: 19.160

3.  Naturally Occurring Isoleucyl-tRNA Synthetase without tRNA-dependent Pre-transfer Editing.

Authors:  Nevena Cvetesic; Morana Dulic; Mirna Bilus; Nikolina Sostaric; Boris Lenhard; Ita Gruic-Sovulj
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4.  Role of D-aminoacyl-tRNA deacylase beyond chiral proofreading as a cellular defense against glycine mischarging by AlaRS.

Authors:  Komal Ishwar Pawar; Katta Suma; Ayshwarya Seenivasan; Santosh Kumar Kuncha; Satya Brata Routh; Shobha P Kruparani; Rajan Sankaranarayanan
Journal:  Elife       Date:  2017-03-31       Impact factor: 8.140

5.  Elongation Factor Tu Prevents Misediting of Gly-tRNA(Gly) Caused by the Design Behind the Chiral Proofreading Site of D-Aminoacyl-tRNA Deacylase.

Authors:  Satya Brata Routh; Komal Ishwar Pawar; Sadeem Ahmad; Swati Singh; Katta Suma; Mantu Kumar; Santosh Kumar Kuncha; Kranthikumar Yadav; Shobha P Kruparani; Rajan Sankaranarayanan
Journal:  PLoS Biol       Date:  2016-05-25       Impact factor: 8.029

6.  Proteome-wide measurement of non-canonical bacterial mistranslation by quantitative mass spectrometry of protein modifications.

Authors:  Nevena Cvetesic; Maja Semanjski; Boumediene Soufi; Karsten Krug; Ita Gruic-Sovulj; Boris Macek
Journal:  Sci Rep       Date:  2016-07-05       Impact factor: 4.379

  6 in total

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