Literature DB >> 18241789

[3'-32P]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation.

Sarah Ledoux1, Olke C Uhlenbeck.   

Abstract

The analysis of reactions involving amino acids esterified to tRNAs traditionally uses radiolabeled amino acids. We describe here an alternative assay involving [3'-32P]-labeled tRNA followed by nuclease digestion and TLC analysis that permits aminoacylation to be monitored in an efficient, quantitative manner while circumventing many of the problems faced when using radiolabeled amino acids. We also describe a similar assay using [3'-32P]-labeled aa-tRNAs to determine the rate of peptide bond formation on the ribosome. This type of assay can also potentially be adapted to study other reactions involving an amino acid or peptide esterified to tRNA.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18241789      PMCID: PMC2275914          DOI: 10.1016/j.ymeth.2007.08.001

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  50 in total

1.  Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites.

Authors:  Richard P Fahlman; Taraka Dale; Olke C Uhlenbeck
Journal:  Mol Cell       Date:  2004-12-03       Impact factor: 17.970

2.  Binding of misacylated tRNAs to the ribosomal A site.

Authors:  Taraka Dale; Olke C Uhlenbeck
Journal:  RNA       Date:  2005-11       Impact factor: 4.942

3.  A 16S rRNA-tRNA product containing a nucleotide phototrimer and specific for tRNA in the P/E hybrid state in the Escherichia coli ribosome.

Authors:  Wayne Huggins; Paul Wollenzien
Journal:  Nucleic Acids Res       Date:  2004-12-14       Impact factor: 16.971

4.  An active role for tRNA in decoding beyond codon:anticodon pairing.

Authors:  Luisa Cochella; Rachel Green
Journal:  Science       Date:  2005-05-20       Impact factor: 47.728

5.  Ribosomal synthesis of unnatural peptides.

Authors:  Kristopher Josephson; Matthew C T Hartman; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2005-08-24       Impact factor: 15.419

6.  Idiosyncratic tuning of tRNAs to achieve uniform ribosome binding.

Authors:  Mikołaj Olejniczak; Taraka Dale; Richard P Fahlman; Olke C Uhlenbeck
Journal:  Nat Struct Mol Biol       Date:  2005-08-21       Impact factor: 15.369

7.  A top-half tDNA minihelix is a good substrate for the eubacterial CCA-adding enzyme.

Authors:  P Y Shi; A M Weiner; N Maizels
Journal:  RNA       Date:  1998-03       Impact factor: 4.942

8.  RNA-dependent cysteine biosynthesis in archaea.

Authors:  Anselm Sauerwald; Wenhong Zhu; Tiffany A Major; Hervé Roy; Sotiria Palioura; Dieter Jahn; William B Whitman; John R Yates; Michael Ibba; Dieter Söll
Journal:  Science       Date:  2005-03-25       Impact factor: 47.728

9.  Isolation of a temperature-sensitive mutant with an altered tRNA nucleotidyltransferase and cloning of the gene encoding tRNA nucleotidyltransferase in the yeast Saccharomyces cerevisiae.

Authors:  M Aebi; G Kirchner; J Y Chen; U Vijayraghavan; A Jacobson; N C Martin; J Abelson
Journal:  J Biol Chem       Date:  1990-09-25       Impact factor: 5.157

10.  Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome.

Authors:  T Pape; W Wintermeyer; M V Rodnina
Journal:  EMBO J       Date:  1998-12-15       Impact factor: 11.598

View more
  60 in total

1.  Kinetics of tRNA folding monitored by aminoacylation.

Authors:  Hari Bhaskaran; Annia Rodriguez-Hernandez; John J Perona
Journal:  RNA       Date:  2012-01-27       Impact factor: 4.942

2.  Kinetic partitioning between synthetic and editing pathways in class I aminoacyl-tRNA synthetases occurs at both pre-transfer and post-transfer hydrolytic steps.

Authors:  Nevena Cvetesic; John J Perona; Ita Gruic-Sovulj
Journal:  J Biol Chem       Date:  2012-05-30       Impact factor: 5.157

3.  Functional elucidation of a key contact between tRNA and the large ribosomal subunit rRNA during decoding.

Authors:  Rodrigo F Ortiz-Meoz; Rachel Green
Journal:  RNA       Date:  2010-08-25       Impact factor: 4.942

4.  Ancestral AlaX editing enzymes for control of genetic code fidelity are not tRNA-specific.

Authors:  Eva Maria Novoa; Oscar Vargas-Rodriguez; Stefanie Lange; Yuki Goto; Hiroaki Suga; Karin Musier-Forsyth; Lluís Ribas de Pouplana
Journal:  J Biol Chem       Date:  2015-02-27       Impact factor: 5.157

5.  Tuning the affinity of aminoacyl-tRNA to elongation factor Tu for optimal decoding.

Authors:  Jared M Schrader; Stephen J Chapman; Olke C Uhlenbeck
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-14       Impact factor: 11.205

6.  Fidelity escape by the unnatural amino acid β-hydroxynorvaline: an efficient substrate for Escherichia coli threonyl-tRNA synthetase with toxic effects on growth.

Authors:  Anand Minajigi; Bin Deng; Christopher S Francklyn
Journal:  Biochemistry       Date:  2011-01-24       Impact factor: 3.162

7.  Quality control by trans-editing factor prevents global mistranslation of non-protein amino acid α-aminobutyrate.

Authors:  Jo Marie Bacusmo; Alexandra B Kuzmishin; William A Cantara; Yuki Goto; Hiroaki Suga; Karin Musier-Forsyth
Journal:  RNA Biol       Date:  2017-11-03       Impact factor: 4.652

8.  Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation.

Authors:  Ziwei Liu; Oscar Vargas-Rodriguez; Yuki Goto; Eva Maria Novoa; Lluís Ribas de Pouplana; Hiroaki Suga; Karin Musier-Forsyth
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

9.  Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin.

Authors:  Tilman Schneider-Poetsch; Jianhua Ju; Daniel E Eyler; Yongjun Dang; Shridhar Bhat; William C Merrick; Rachel Green; Ben Shen; Jun O Liu
Journal:  Nat Chem Biol       Date:  2010-01-31       Impact factor: 15.040

10.  A sequence element that tunes Escherichia coli tRNA(Ala)(GGC) to ensure accurate decoding.

Authors:  Sarah Ledoux; Mikołaj Olejniczak; Olke C Uhlenbeck
Journal:  Nat Struct Mol Biol       Date:  2009-03-22       Impact factor: 15.369

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.