Literature DB >> 23748558

Predicting the preferred conformations of luteolin-4'-O-β-D-glucoside in gas phase: a comparison of two computational approaches.

Yongzhi Li1, Xiuhua Liu, Dong Chen, Zhichao Wei, Bo Liu.   

Abstract

A tree-step computational approach has been applied to determine the lowest-energy conformers of luteolin-4'-O-β-D-glucoside (L4'G). Fifty-seven starting structures of the L4'G have been built, and then by performing with density functional theory (DFT) optimizations and second-order Møller-Plesset (MP2) calculations, the preferred conformations of L4'G are predicted. In order to test the accuracy of the computational approach, a hybrid Monte-Carlo multiple minimum (MCMM)/quantum mechanical (QM) approach is applied to determine the favorable conformers of L4'G. The alternative classification is employed to put similar conformations into the same catalogue according to the dihedral angles among the luteolin rings, glycosidic dihedral angles, and the orientations of hydroxyl and hydroxymethyl groups. The low-energy conformations are located after the optimizations at the HF/6-31G(d) and B3LYP/6-311+G(d) levels. Compared with the hybrid MCMM/QM approach, the tree-step computational approach not only remains accurate but also saves a lot of computing resources.

Entities:  

Year:  2013        PMID: 23748558     DOI: 10.1007/s00894-013-1894-9

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  20 in total

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Journal:  Pharmazie       Date:  2003-08       Impact factor: 1.267

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Authors:  Rebecca A Jockusch; Romano T Kroemer; Francis O Talbot; Lavina C Snoek; Pierre Carçabal; John P Simons; Martina Havenith; Joost M Bakker; Isabelle Compagnon; Gerard Meijer; Gert von Helden
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3.  Phenolics and antimicrobial activity of traditional stoned table olives 'alcaparra'.

Authors:  Anabela Sousa; Isabel C F R Ferreira; Ricardo Calhelha; Paula B Andrade; Patrícia Valentão; Rosa Seabra; Letícia Estevinho; Albino Bento; José Alberto Pereira
Journal:  Bioorg Med Chem       Date:  2006-09-12       Impact factor: 3.641

4.  Phenolic compounds from the leaf extract of artichoke (Cynara scolymus L.) and their antimicrobial activities.

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Journal:  J Agric Food Chem       Date:  2004-12-01       Impact factor: 5.279

5.  Antimicrobial activity, toxicity and the isolation of a bioactive compound from plants used to treat sexually transmitted diseases.

Authors:  T E Tshikalange; J J M Meyer; A A Hussein
Journal:  J Ethnopharmacol       Date:  2004-11-30       Impact factor: 4.360

6.  Anti-inflammatory and antiviral effects of Glossogyne tenuifolia.

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Journal:  Life Sci       Date:  2005-01-21       Impact factor: 5.037

7.  Small molecules blocking the entry of severe acute respiratory syndrome coronavirus into host cells.

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Journal:  J Virol       Date:  2004-10       Impact factor: 5.103

8.  Synthesis and biological evaluation of novel luteolin derivatives as antibacterial agents.

Authors:  Peng-Cheng Lv; Huan-Qiu Li; Jia-Yu Xue; Lei Shi; Hai-Liang Zhu
Journal:  Eur J Med Chem       Date:  2008-01-25       Impact factor: 6.514

9.  Anti-influenza virus activities of flavonoids from the medicinal plant Elsholtzia rugulosa.

Authors:  Ai-Lin Liu; Bo Liu; Hai-Lin Qin; Simon Mingyuen Lee; Yi-Tao Wang; Guan-Hua Du
Journal:  Planta Med       Date:  2008-06-13       Impact factor: 3.352

10.  Hydrogen bonding and cooperativity in isolated and hydrated sugars: mannose, galactose, glucose, and lactose.

Authors:  Pierre Carçabal; Rebecca A Jockusch; Isabel Hünig; Lavina C Snoek; Romano T Kroemer; Benjamin G Davis; David P Gamblin; Isabelle Compagnon; Jos Oomens; John P Simons
Journal:  J Am Chem Soc       Date:  2005-08-17       Impact factor: 15.419

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  1 in total

1.  Performance of four different force fields for simulations of dipeptide conformations: GlyGly, GlyGly-, GlyGly · Cl-, GlyGly · Na+ and GlyGly · (H2O)2.

Authors:  Chen Dong; Li Yong-Zhi; Wei Zhi-Chao; Liu Bo
Journal:  J Mol Model       Date:  2014-05-27       Impact factor: 1.810

  1 in total

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