Literature DB >> 15125663

Probing the glycosidic linkage: UV and IR ion-dip spectroscopy of a lactoside.

Rebecca A Jockusch1, Romano T Kroemer, Francis O Talbot, Lavina C Snoek, Pierre Carçabal, John P Simons, Martina Havenith, Joost M Bakker, Isabelle Compagnon, Gerard Meijer, Gert von Helden.   

Abstract

The beta(1-->4) glycosidic linkage found in lactose is a prevalent structural motif in many carbohydrates and glycoconjugates. Using UV and IR ion-dip spectroscopies to probe benzyl lactoside isolated in the gas phase, we find that the disaccharide unit adopts only a single, rigid structure. Its fully resolved infrared ion-dip spectrum is in excellent agreement with that of the global minimum structure computed ab initio. This has glycosidic torsion angles of phi(H) (H1-C1-O-C4') approximately 180 degrees and psi(H) (C1-O-C4'-H4') approximately 0 degrees which correspond to a rotation of approximately 150 degrees about the glycosidic bond compared to the accepted solution-phase conformation. We discuss the biological implications of this discovery and the generality of the strategies employed in making it.

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Year:  2004        PMID: 15125663     DOI: 10.1021/ja031679k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  8 in total

1.  Predicting the preferred conformations of luteolin-4'-O-β-D-glucoside in gas phase: a comparison of two computational approaches.

Authors:  Yongzhi Li; Xiuhua Liu; Dong Chen; Zhichao Wei; Bo Liu
Journal:  J Mol Model       Date:  2013-06-09       Impact factor: 1.810

2.  Intramolecular hydrogen-bonding in aqueous carbohydrates as a cause or consequence of conformational preferences: a molecular dynamics study of cellobiose stereoisomers.

Authors:  Dongqi Wang; Maria Lovísa Ámundadóttir; Wilfred F van Gunsteren; Philippe H Hünenberger
Journal:  Eur Biophys J       Date:  2013-05-10       Impact factor: 1.733

3.  Solute-induced retardation of water dynamics probed directly by terahertz spectroscopy.

Authors:  U Heugen; G Schwaab; E Bründermann; M Heyden; X Yu; D M Leitner; M Havenith
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-08       Impact factor: 11.205

4.  Performance of four different force fields for simulations of dipeptide conformations: GlyGly, GlyGly-, GlyGly · Cl-, GlyGly · Na+ and GlyGly · (H2O)2.

Authors:  Chen Dong; Li Yong-Zhi; Wei Zhi-Chao; Liu Bo
Journal:  J Mol Model       Date:  2014-05-27       Impact factor: 1.810

Review 5.  Mass Spectrometry-Based Techniques to Elucidate the Sugar Code.

Authors:  Márkó Grabarics; Maike Lettow; Carla Kirschbaum; Kim Greis; Christian Manz; Kevin Pagel
Journal:  Chem Rev       Date:  2021-09-07       Impact factor: 72.087

6.  Mass Spectral Detection of Forward- and Reverse-Hydrogen/Deuterium Exchange Resulting from Residual Solvent Vapors in Electrospray Sources.

Authors:  H Jamie Kim; O Tara Liyanage; Marina R Mulenos; Elyssia S Gallagher
Journal:  J Am Soc Mass Spectrom       Date:  2018-07-11       Impact factor: 3.109

7.  Modulation of Protein Fouling and Interfacial Properties at Carbon Surfaces via Immobilization of Glycans Using Aryldiazonium Chemistry.

Authors:  Federico Zen; M Daniela Angione; James A Behan; Ronan J Cullen; Thomas Duff; Joana M Vasconcelos; Eoin M Scanlan; Paula E Colavita
Journal:  Sci Rep       Date:  2016-04-25       Impact factor: 4.379

8.  Anomeric memory of the glycosidic bond upon fragmentation and its consequences for carbohydrate sequencing.

Authors:  Baptiste Schindler; Loïc Barnes; Gina Renois; Christopher Gray; Stéphane Chambert; Sébastien Fort; Sabine Flitsch; Claire Loison; Abdul-Rahman Allouche; Isabelle Compagnon
Journal:  Nat Commun       Date:  2017-10-17       Impact factor: 14.919

  8 in total

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