Literature DB >> 23745719

Perspectives in enzymology of membrane proteins by solid-state NMR.

Sandra J Ullrich1, Clemens Glaubitz.   

Abstract

Membrane proteins catalyze reactions at the cell membrane and facilitate thetransport of molecules or signals across the membrane. Recently researchers have made great progress in understanding the structural biology of membrane proteins, mainly based on X-ray crystallography. In addition, the application of complementary spectroscopic techniques has allowed researchers to develop a functional understanding of these proteins. Solid-state NMR has become an indispensable tool for the structure-function analysis of insoluble proteins and protein complexes. It offers the possibility of investigating membrane proteins directly in their environment, which provides essential information about the intrinsic coupling of protein structure and functional dynamics within the lipid bilayer. However, to date, researchers have hardly explored the enzymology of mem-brane proteins. In this Account, we review the perspectives for investigating membrane-bound enzymes by solid-state NMR. Understanding enzyme mechanisms requires access to kinetic parameters, structural analysis of the catalytic center, knowledge of the 3D structure and methods to follow the structural dynamics of the enzyme during the catalytic cycle. In principle, solid-state NMR can address all of these issues. Researchers can characterize the enzyme kinetics by observing substrate turnover within the membrane or at the membrane interphase in a time-resolved fashion as shown for diacylglycerol kinase. Solid-state NMR has also provided a mechanistic understanding of soluble enzymes including triosephosphate isomerase (TIM) and different metal-binding proteins, which demonstrates a promising perspective also for membrane proteins. The increasing availability of high magnetic fields and the development of new experimental schemes and computational protocols have made it easier to determine 3D structure using solid-state NMR. Dynamic nuclear polarization, a key technique to boost sensitivity of solid-state NMR at low temperatures, can help with the analysis of thermally trapped catalytic intermediates, while methods to improve signal-to-noise per time unit enable the real-time measurement of kinetics of conformational changes during the catalytic cycle.

Entities:  

Mesh:

Substances:

Year:  2013        PMID: 23745719     DOI: 10.1021/ar4000289

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  10 in total

1.  SedNMR: a web tool for optimizing sedimentation of macromolecular solutes for SSNMR.

Authors:  Lucio Ferella; Claudio Luchinat; Enrico Ravera; Antonio Rosato
Journal:  J Biomol NMR       Date:  2013-11-17       Impact factor: 2.835

Review 2.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

3.  The development of solid-state NMR of membrane proteins.

Authors:  Stanley J Opella
Journal:  Biomed Spectrosc Imaging       Date:  2014

4.  Probing Conformational Changes during the Gating Cycle of a Potassium Channel in Lipid Bilayers.

Authors:  Elwin A W van der Cruijsen; Alexander V Prokofyev; Olaf Pongs; Marc Baldus
Journal:  Biophys J       Date:  2017-01-10       Impact factor: 4.033

5.  Solid-state NMR of the Yersinia pestis outer membrane protein Ail in lipid bilayer nanodiscs sedimented by ultracentrifugation.

Authors:  Yi Ding; L Miya Fujimoto; Yong Yao; Francesca M Marassi
Journal:  J Biomol NMR       Date:  2015-01-13       Impact factor: 2.835

6.  Dynamic Nuclear Polarization as an Enabling Technology for Solid State Nuclear Magnetic Resonance Spectroscopy.

Authors:  Adam N Smith; Joanna R Long
Journal:  Anal Chem       Date:  2015-12-17       Impact factor: 6.986

Review 7.  NMR structures of membrane proteins in phospholipid bilayers.

Authors:  Jasmina Radoicic; George J Lu; Stanley J Opella
Journal:  Q Rev Biophys       Date:  2014-07-17       Impact factor: 5.318

Review 8.  Assessing the Role of Lipids in the Molecular Mechanism of Membrane Proteins.

Authors:  Léni Jodaitis; Thomas van Oene; Chloé Martens
Journal:  Int J Mol Sci       Date:  2021-07-06       Impact factor: 5.923

9.  Formation of the β-barrel assembly machinery complex in lipid bilayers as seen by solid-state NMR.

Authors:  Cecilia Pinto; Deni Mance; Tessa Sinnige; Mark Daniëls; Markus Weingarth; Marc Baldus
Journal:  Nat Commun       Date:  2018-10-08       Impact factor: 14.919

10.  Dimer Organization of Membrane-Associated NS5A of Hepatitis C Virus as Determined by Highly Sensitive 1 H-Detected Solid-State NMR.

Authors:  Vlastimil Jirasko; Alons Lends; Nils-Alexander Lakomek; Marie-Laure Fogeron; Marco E Weber; Alexander A Malär; Susanne Penzel; Ralf Bartenschlager; Beat H Meier; Anja Böckmann
Journal:  Angew Chem Int Ed Engl       Date:  2021-01-18       Impact factor: 15.336

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.