Literature DB >> 23742246

Structural and energetic basis of carbohydrate-aromatic packing interactions in proteins.

Wentao Chen1, Sebastian Enck, Joshua L Price, David L Powers, Evan T Powers, Chi-Huey Wong, H Jane Dyson, Jeffery W Kelly.   

Abstract

Carbohydrate-aromatic interactions mediate many biological processes. However, the structure-energy relationships underpinning direct carbohydrate-aromatic packing interactions in aqueous solution have been difficult to assess experimentally and remain elusive. Here, we determine the structures and folding energetics of chemically synthesized glycoproteins to quantify the contributions of the hydrophobic effect and CH-π interactions to carbohydrate-aromatic packing interactions in proteins. We find that the hydrophobic effect contributes significantly to protein-carbohydrate interactions. Interactions between carbohydrates and aromatic amino acid side chains, however, are supplemented by CH-π interactions. The strengths of experimentally determined carbohydrate CH-π interactions do not correlate with the electrostatic properties of the involved aromatic residues, suggesting that the electrostatic component of CH-π interactions in aqueous solution is small. Thus, tight binding of carbohydrates and aromatic residues is driven by the hydrophobic effect and CH-π interactions featuring a dominating dispersive component.

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Year:  2013        PMID: 23742246      PMCID: PMC3715148          DOI: 10.1021/ja4040472

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  45 in total

1.  Atomic physicochemical parameters for three-dimensional-structure-directed quantitative structure-activity relationships. 2. Modeling dispersive and hydrophobic interactions.

Authors:  A K Ghose; G M Crippen
Journal:  J Chem Inf Comput Sci       Date:  1987-02

2.  Carbohydrate-aromatic interactions.

Authors:  Juan Luis Asensio; Ana Ardá; Francisco Javier Cañada; Jesús Jiménez-Barbero
Journal:  Acc Chem Res       Date:  2012-06-15       Impact factor: 22.384

3.  Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding.

Authors:  J K Myers; C N Pace; J M Scholtz
Journal:  Protein Sci       Date:  1995-10       Impact factor: 6.725

4.  Glycosylation of the enhanced aromatic sequon is similarly stabilizing in three distinct reverse turn contexts.

Authors:  Joshua L Price; David L Powers; Evan T Powers; Jeffery W Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-08       Impact factor: 11.205

Review 5.  Aromatic rings in chemical and biological recognition: energetics and structures.

Authors:  Laura M Salonen; Manuel Ellermann; François Diederich
Journal:  Angew Chem Int Ed Engl       Date:  2011-04-28       Impact factor: 15.336

6.  The conformational effects of N-glycosylation on the tailpiece from serum IgM.

Authors:  M R Wormald; E W Wooten; R Bazzo; C J Edge; A Feinstein; T W Rademacher; R A Dwek
Journal:  Eur J Biochem       Date:  1991-05-23

7.  Molecular recognition of saccharides by proteins. Insights on the origin of the carbohydrate-aromatic interactions.

Authors:  María del Carmen Fernández-Alonso; Francisco Javier Cañada; Jesús Jiménez-Barbero; Gabriel Cuevas
Journal:  J Am Chem Soc       Date:  2005-05-25       Impact factor: 15.419

8.  Aromatic-carbohydrate interactions: an NMR and computational study of model systems.

Authors:  Sophie Vandenbussche; Dolores Díaz; María Carmen Fernández-Alonso; Weidong Pan; Stéphane P Vincent; Gabriel Cuevas; Francisco Javier Cañada; Jesús Jiménez-Barbero; Kristin Bartik
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

Review 9.  Roles of N-linked glycans in the endoplasmic reticulum.

Authors:  Ari Helenius; Markus Aebi
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

10.  Carbohydrate molecular recognition: a spectroscopic investigation of carbohydrate-aromatic interactions.

Authors:  E Cristina Stanca-Kaposta; David P Gamblin; James Screen; Bo Liu; Lavina C Snoek; Benjamin G Davis; John P Simons
Journal:  Phys Chem Chem Phys       Date:  2007-05-18       Impact factor: 3.676

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  31 in total

1.  Fluorescent Dye Adsorption in Aqueous Suspension to Produce Tagged Cellulose Nanofibers for Visualization on Paper.

Authors:  Emilia Purington; Douglas Bousfield; William M Gramlich
Journal:  Cellulose (Lond)       Date:  2019-04-20       Impact factor: 5.044

2.  The crystal structure of the major pneumococcal autolysin LytA in complex with a large peptidoglycan fragment reveals the pivotal role of glycans for lytic activity.

Authors:  Tatyana Sandalova; Mijoon Lee; Birgitta Henriques-Normark; Dusan Hesek; Shahriar Mobashery; Peter Mellroth; Adnane Achour
Journal:  Mol Microbiol       Date:  2016-07-05       Impact factor: 3.501

Review 3.  Oligosaccharide Synthesis and Translational Innovation.

Authors:  Larissa Krasnova; Chi-Huey Wong
Journal:  J Am Chem Soc       Date:  2019-02-18       Impact factor: 15.419

4.  The Dependence of Carbohydrate-Aromatic Interaction Strengths on the Structure of the Carbohydrate.

Authors:  Che-Hsiung Hsu; Sangho Park; David E Mortenson; B Lachele Foley; Xiaocong Wang; Robert J Woods; David A Case; Evan T Powers; Chi-Huey Wong; H Jane Dyson; Jeffery W Kelly
Journal:  J Am Chem Soc       Date:  2016-06-14       Impact factor: 15.419

5.  Structural Analysis of an Avr4 Effector Ortholog Offers Insight into Chitin Binding and Recognition by the Cf-4 Receptor.

Authors:  Amanda C Kohler; Li-Hung Chen; Nicholas Hurlburt; Anthony Salvucci; Benjamin Schwessinger; Andrew J Fisher; Ioannis Stergiopoulos
Journal:  Plant Cell       Date:  2016-07-08       Impact factor: 11.277

6.  Substrate recognition and catalysis by GH47 α-mannosidases involved in Asn-linked glycan maturation in the mammalian secretory pathway.

Authors:  Yong Xiang; Khanita Karaveg; Kelley W Moremen
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-17       Impact factor: 11.205

7.  PEGylation near a Patch of Nonpolar Surface Residues Increases the Conformational Stability of the WW Domain.

Authors:  Steven R E Draper; Dallin S Ashton; Benjamin M Conover; Anthony J Carter; Kimberlee L Stern; Qiang Xiao; Joshua L Price
Journal:  J Org Chem       Date:  2019-12-09       Impact factor: 4.354

Review 8.  A perspective on the structure and receptor binding properties of immunoglobulin G Fc.

Authors:  Quinlin M Hanson; Adam W Barb
Journal:  Biochemistry       Date:  2015-05-07       Impact factor: 3.162

9.  Using Cooperatively Folded Peptides To Measure Interaction Energies and Conformational Propensities.

Authors:  Maziar S Ardejani; Evan T Powers; Jeffery W Kelly
Journal:  Acc Chem Res       Date:  2017-07-19       Impact factor: 22.384

10.  Stabilizing the CH2 Domain of an Antibody by Engineering in an Enhanced Aromatic Sequon.

Authors:  Wentao Chen; Leopold Kong; Stephen Connelly; Julia M Dendle; Yu Liu; Ian A Wilson; Evan T Powers; Jeffery W Kelly
Journal:  ACS Chem Biol       Date:  2016-04-29       Impact factor: 5.100

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