Literature DB >> 18481803

Aromatic-carbohydrate interactions: an NMR and computational study of model systems.

Sophie Vandenbussche1, Dolores Díaz, María Carmen Fernández-Alonso, Weidong Pan, Stéphane P Vincent, Gabriel Cuevas, Francisco Javier Cañada, Jesús Jiménez-Barbero, Kristin Bartik.   

Abstract

The interactions of simple carbohydrates with aromatic moieties have been investigated experimentally by NMR spectroscopy. The analysis of the changes in the chemical shifts of the sugar proton signals induced upon addition of aromatic entities has been interpreted in terms of interaction geometries. Phenol and aromatic amino acids (phenylalanine, tyrosine, tryptophan) have been used. The observed sugar-aromatic interactions depend on the chemical nature of the sugar, and thus on the stereochemistries of the different carbon atoms, and also on the solvent. A preliminary study of the solvation state of a model monosaccharide (methyl beta-galactopyranoside) in aqueous solution, both alone and in the presence of benzene and phenol, has also been carried out by monitoring of intermolecular homonuclear solvent-sugar and aromatic-sugar NOEs. These experimental results have been compared with those obtained by density functional theory methods and molecular mechanics calculations.

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Year:  2008        PMID: 18481803     DOI: 10.1002/chem.200800247

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  23 in total

1.  Biochemical and structural characterization of the complex agarolytic enzyme system from the marine bacterium Zobellia galactanivorans.

Authors:  Jan-Hendrik Hehemann; Gaëlle Correc; François Thomas; Thomas Bernard; Tristan Barbeyron; Murielle Jam; William Helbert; Gurvan Michel; Mirjam Czjzek
Journal:  J Biol Chem       Date:  2012-07-09       Impact factor: 5.157

2.  Tryptophan as a molecular shovel in the glycosyl transfer activity of Trypanosoma cruzi trans-sialidase.

Authors:  Felicity L Mitchell; Steven M Miles; João Neres; Elena V Bichenkova; Richard A Bryce
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

3.  Free energy surfaces for the interaction of D-glucose with planar aromatic groups in aqueous solution.

Authors:  Jakob Wohlert; Udo Schnupf; John W Brady
Journal:  J Chem Phys       Date:  2010-10-21       Impact factor: 3.488

4.  Multiple functions of aromatic-carbohydrate interactions in a processive cellulase examined with molecular simulation.

Authors:  Christina M Payne; Yannick J Bomble; Courtney B Taylor; Clare McCabe; Michael E Himmel; Michael F Crowley; Gregg T Beckham
Journal:  J Biol Chem       Date:  2011-09-29       Impact factor: 5.157

5.  Caffeine and sugars interact in aqueous solutions: a simulation and NMR study.

Authors:  Letizia Tavagnacco; Olof Engström; Udo Schnupf; Marie-Louise Saboungi; Michael Himmel; Göran Widmalm; Attilio Cesàro; John W Brady
Journal:  J Phys Chem B       Date:  2012-09-13       Impact factor: 2.991

6.  Structural and energetic basis of carbohydrate-aromatic packing interactions in proteins.

Authors:  Wentao Chen; Sebastian Enck; Joshua L Price; David L Powers; Evan T Powers; Chi-Huey Wong; H Jane Dyson; Jeffery W Kelly
Journal:  J Am Chem Soc       Date:  2013-06-19       Impact factor: 15.419

7.  A Catalytic Role for C-H/π Interactions in Base Excision Repair by Bacillus cereus DNA Glycosylase AlkD.

Authors:  Zachary D Parsons; Joshua M Bland; Elwood A Mullins; Brandt F Eichman
Journal:  J Am Chem Soc       Date:  2016-09-01       Impact factor: 15.419

Review 8.  Bioinformatics and molecular modeling in glycobiology.

Authors:  Martin Frank; Siegfried Schloissnig
Journal:  Cell Mol Life Sci       Date:  2010-04-04       Impact factor: 9.261

9.  Carbohydrate-pi interactions: what are they worth?

Authors:  Zachary R Laughrey; Sarah E Kiehna; Alex J Riemen; Marcey L Waters
Journal:  J Am Chem Soc       Date:  2008-10-10       Impact factor: 15.419

Review 10.  Progress in biomimetic carbohydrate recognition.

Authors:  D Barney Walker; Gururaj Joshi; Anthony P Davis
Journal:  Cell Mol Life Sci       Date:  2009-07-07       Impact factor: 9.261

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