Literature DB >> 23734828

DNA origami nanopores for controlling DNA translocation.

Silvia Hernández-Ainsa1, Nicholas A W Bell, Vivek V Thacker, Kerstin Göpfrich, Karolis Misiunas, Maria Eugenia Fuentes-Perez, Fernando Moreno-Herrero, Ulrich F Keyser.   

Abstract

We combine DNA origami structures with glass nanocapillaries to reversibly form hybrid DNA origami nanopores. Trapping of the DNA origami onto the nanocapillary is proven by imaging fluorescently labeled DNA origami structures and simultaneous ionic current measurements of the trapping events. We then show two applications highlighting the versatility of these DNA origami nanopores. First, by tuning the pore size we can control the folding of dsDNA molecules ("physical control"). Second, we show that the specific introduction of binding sites in the DNA origami nanopore allows selective detection of ssDNA as a function of the DNA sequence ("chemical control").

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Year:  2013        PMID: 23734828     DOI: 10.1021/nn401759r

Source DB:  PubMed          Journal:  ACS Nano        ISSN: 1936-0851            Impact factor:   15.881


  22 in total

Review 1.  DNA Origami: Folded DNA-Nanodevices That Can Direct and Interpret Cell Behavior.

Authors:  Cathal J Kearney; Christopher R Lucas; Fergal J O'Brien; Carlos E Castro
Journal:  Adv Mater       Date:  2016-02-03       Impact factor: 30.849

2.  Enhancing nanopore sensing with DNA nanotechnology.

Authors:  Ulrich F Keyser
Journal:  Nat Nanotechnol       Date:  2016-02       Impact factor: 39.213

3.  In situ structure and dynamics of DNA origami determined through molecular dynamics simulations.

Authors:  Jejoong Yoo; Aleksei Aksimentiev
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-25       Impact factor: 11.205

Review 4.  Challenges in DNA motion control and sequence readout using nanopore devices.

Authors:  Spencer Carson; Meni Wanunu
Journal:  Nanotechnology       Date:  2015-02-02       Impact factor: 3.874

Review 5.  Bioapplications of DNA nanotechnology at the solid-liquid interface.

Authors:  Wenjing Wang; Sha Yu; Shan Huang; Sai Bi; Heyou Han; Jian-Rong Zhang; Yi Lu; Jun-Jie Zhu
Journal:  Chem Soc Rev       Date:  2019-09-16       Impact factor: 54.564

Review 6.  Dynamic DNA Structures.

Authors:  Yingwei Zhang; Victor Pan; Xue Li; Xueqin Yang; Haofei Li; Pengfei Wang; Yonggang Ke
Journal:  Small       Date:  2019-04-10       Impact factor: 13.281

Review 7.  Flow of DNA in micro/nanofluidics: From fundamentals to applications.

Authors:  Lea Rems; Durgesh Kawale; L James Lee; Pouyan E Boukany
Journal:  Biomicrofluidics       Date:  2016-07-20       Impact factor: 2.800

8.  DNA Translocation through Hybrid Bilayer Nanopores.

Authors:  Ramkumar Balasubramanian; Sohini Pal; Himanshu Joshi; Anjana Rao; Akshay Naik; Manoj Varma; Banani Chakraborty; Prabal K Maiti
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2019-04-23       Impact factor: 4.126

9.  Ionic conductivity, structural deformation, and programmable anisotropy of DNA origami in electric field.

Authors:  Chen-Yu Li; Elisa A Hemmig; Jinglin Kong; Jejoong Yoo; Silvia Hernández-Ainsa; Ulrich F Keyser; Aleksei Aksimentiev
Journal:  ACS Nano       Date:  2015-01-30       Impact factor: 15.881

Review 10.  Single-molecule nanopore enzymology.

Authors:  Kherim Willems; Veerle Van Meervelt; Carsten Wloka; Giovanni Maglia
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-08-05       Impact factor: 6.237

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