Literature DB >> 23734227

Extracting physician group intelligence from electronic health records to support evidence based medicine.

Griffin M Weber1, Isaac S Kohane.   

Abstract

Evidence-based medicine employs expert opinion and clinical data to inform clinical decision making. The objective of this study is to determine whether it is possible to complement these sources of evidence with information about physician "group intelligence" that exists in electronic health records. Specifically, we measured laboratory test "repeat intervals", defined as the amount of time it takes for a physician to repeat a test that was previously ordered for the same patient. Our assumption is that while the result of a test is a direct measure of one marker of a patient's health, the physician's decision to order the test is based on multiple factors including past experience, available treatment options, and information about the patient that might not be coded in the electronic health record. By examining repeat intervals in aggregate over large numbers of patients, we show that it is possible to 1) determine what laboratory test results physicians consider "normal", 2) identify subpopulations of patients that deviate from the norm, and 3) identify situations where laboratory tests are over-ordered. We used laboratory tests as just one example of how physician group intelligence can be used to support evidence based medicine in a way that is automated and continually updated.

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Year:  2013        PMID: 23734227      PMCID: PMC3666978          DOI: 10.1371/journal.pone.0064933

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


Introduction

In evidence-based medicine (EBM), clinical practice guidelines are driven by expert consensus, which is typically based on review of the literature, clinical experience, and outcomes analyses [1], [2]. A major challenge of EBM is the effort and cost needed to keep the knowledge of clinical practice up to date across an ever-widening array of diagnostic and therapeutic options [3]. One way to approach this problem is through analysis of the large amounts of data collected in electronic health records (EHR) [4]. Usually the variable being examined in these datasets is a patient outcome, such as survival [5]. However, in this study we will demonstrate that EHRs not only contain information about patient outcomes, but they also provide insight to providers' knowledge of their patients' state of health, which can also be used in generating EBM guidelines. We will do this in the context of laboratory tests. Instead of looking at the results of the tests, we will examine when physicians ordered the tests. Whereas the result of a test is a direct measure of one maker of a patient's health, a physician's decision to order a test is based on multiple factors including past experience, available treatment options, and information about the patient that might not be coded in the EHR. Specifically, we will measure laboratory test “repeat interval”, defined as the amount of time it takes for a physician to repeat a test that was previously ordered for the same patient. For example, if a white blood cell count (WBC) test is ordered for a patient, and the next time that patient has a WBC test is seven days later, then the repeat interval is seven days. The physician ordering the repeat test is not necessarily the same person who ordered the previous test, but could presumably access the result of the previous test through the EHR. By examining these repeat intervals in aggregate over large numbers of patients, we can quantify physician behavior and observe how it varies under different conditions. To demonstrate how this can be used for EBM, we will use the laboratory test repeat intervals from the EHRs of two large and independent hospitals in the Boston area to answer three questions: Firstly, can collective physician laboratory test-ordering behavior, which we call physician “group intelligence”, be used to define what it means for a laboratory test result to be “normal”? Secondly, can subpopulations of patients be identified when their physicians' behavior differs from the norm? Finally, can physician group intelligence be used to identify situations where laboratory tests are over-ordered?

Methods

Data Sources

The data used for this study were laboratory test results contained within the Partners Research Patient Data Repository (RPDR), a large clinical database, which combines data from Brigham and Women's Hospital (BWH) and Massachusetts General Hospital (MGH) [6]–[8]. From an initial dataset, which included 3,534,666 patients with 465,313,629 laboratory test results between 1/1/1986 and 6/30/2004, we extracted two datasets: (1) Firstly, we obtained a random sample of 100,000 repeat intervals for each of the 97 different laboratory tests listed in Table 1 (9.7 million repeat intervals). Other laboratory tests were excluded either because they have fewer than 100,000 occurrences, or there are known problems with how the data are recorded. Although there are 4,926 tests in the RPDR, these 97 represent 71% of all test results because they are the ones most frequently ordered. (2) Secondly, we obtained a random sample of 1,000,000 repeat intervals for white blood cells (WBC), which indicated the patient age in days at the time of the tests and whether the tests were performed in inpatient or outpatient settings. The laboratory test dates in the RPDR are typically the dates when the results are ready, rather than when the specimens were obtained or when the results were read. The datasets may be requested by registration and submission of a Data Use Agreement at http://www.i2b2.org/Publication_Data/.
Table 1

Summary of repeat intervals for 97 laboratory tests.

Laboratory Test (LOINC Name)LOINC CodeMedian Repeat IntervalMin Bin Median Repeat IntervalMax Bin Median Repeat IntervalRatio Bin Median Repeat IntervalStDev Repeat IntervalEntropyCategory
pH SerPl-sCnc2753-20.1210.0590.1502.541111.80.722BGB
Base Excess BldA-sCnc1925-70.1220.0780.1762.248144.10.881BG
O2 Satn from pO2 Fr Bld2713-60.1230.0650.1762.691135.60.881BGB
pO2 Bld Qn11556-80.1240.0270.1686.205117.40.811BGB
pCO2 Bld Qn11557-60.1240.0630.1502.400127.50.610BGB
Inhaled O2 rate3151-80.1360.0590.2353.97643.01.279GB
Ca-I Bld-sCnc1994-30.1570.0820.1692.068156.80.286BGB
HCO3 Bld-sCnc1959-60.2080.1180.2532.14776.80.881BG
Ca-I SerPl-sCnc1995-00.2180.1670.2581.550169.20.722BG
Gentamicin SerPl-mCnc35668-30.3790.0762.41831.945199.41.915BG
CK MB SerPl EIA-cCnc6773-60.4020.3420.4721.379368.90.971BGB
CK/CK MB SerPl-cRto2158-40.4240.3830.4631.208337.70.934GBGB
Osmolality SerPl Qn2692-20.4440.2780.8503.060269.41.458GB
Troponin T SerPl-mCnc6598-70.4850.4400.5391.224116.60.000BG
CK SerPl-cCnc2157-60.6420.4241.0172.402400.80.881GB
Troponin I SerPl-mCnc10839-90.7410.43919.85745.244284.71.882GB
aPTT Plas Qn5898-20.9270.3781.2703.356346.71.141GB
Potassium SerPl-sCnc2823-30.9580.4440.9872.224291.70.286BGB
Vancomycin SerPl-mCnc20578-10.9740.1441.51910.519174.30.848BG
Magnesium SerPl-sCnc11554-30.9770.4831.0422.157284.70.286GB
CO2 SerPl-sCnc2028-90.9880.4081.1442.801311.50.748BGB
Glucose SerPl-mCnc6777-70.9960.29224.97885.437332.32.528GB
Sodium SerPl-sCnc2951-20.9970.4261.8464.329310.60.748BGB
Anion Gap3 SerPl-sCnc10466-11.0000.8291.0151.224307.10.000BGB
Hgb Bld-mCnc718-71.0100.39133.96286.865324.82.461BG
Hct Fr Bld Auto4544-31.0260.49040.18881.970336.92.595BG
PT PPP Qn5902-21.0350.9743.1193.202332.61.054GBG
Chloride SerPl-sCnc2075-01.0490.6001.8763.127330.50.748BGB
INR PPP Qn6301-61.0530.9826.9987.127235.81.154GBG
BUN SerPl-mCnc3094-01.0680.7222.9944.145338.51.439BGB
Creat SerPl-mCnc2160-01.0900.8922.1932.460333.40.993BGB
RDW RBC Auto-Rto788-01.1030.98742.92243.495337.11.871GB
MCH RBC Qn Auto785-61.2041.0522.7882.650351.90.992GBG
MCV RBC Qn Auto787-21.2051.0522.7542.618347.81.076GBG
WBC # Bld Auto6690-21.2130.76915.40320.037351.61.923BGB
Phenytoin SerPl-mCnc3968-51.2171.1221.9441.733201.30.610GBGB
RBC # Bld Auto789-81.2170.79643.96355.242347.52.361BG
Platelet # Bld Auto777-31.2250.7357.0339.573349.82.009BGB
MCHC RBC Auto-mCnc786-41.2311.0402.0241.947355.60.993BGB
Calcium SerPl-sCnc2000-81.6440.73635.06847.640390.62.458BG
Digoxin SerPl-mCnc10535-31.9601.0013.1433.139263.61.157GB
Phosphate SerPl-mCnc2777-11.9651.0035.5945.574384.31.971BGB
Lipase SerPl-cCnc3040-31.9740.9995.0315.038427.11.839BGB
Metamyelocytes Fr Bld Manual740-12.4261.0534.1113.902289.61.720GB
Amylase SerPl-cCnc1798-82.4460.98910.44710.564529.32.204BGB
Myelocytes Fr Bld Manual749-22.4561.0434.2784.101277.01.720GB
Neuts Seg Fr Bld Manual769-02.6731.0675.9055.536365.72.195BGB
Monocytes Fr Bld Manual744-32.7601.0924.0413.699358.71.788BGB
Basophils Fr Bld Manual707-02.7762.0216.9683.448359.81.076BG
Lymphocytes Fr Bld Manual737-72.7901.06011.26910.627390.82.409BGB
Eosinophil Fr Bld Manual714-62.8461.8865.9903.176367.61.713BG
Neuts Band # Bld Manual763-32.9241.0288.0657.842172.12.285GB
Estradiol SerPl-mCnc2243-42.9881.05113.92913.248232.21.981GBG
Atypical Lymphs Fr Bld Manual735-13.0402.1235.9012.780416.01.739BG
Neuts Band Fr Bld Manual764-13.8941.02042.12241.291396.52.771GBGB
Cyclosporin Bld-mCnc3520-45.9702.97411.2363.77892.61.533GB
LDH SerPl-cCnc2532-08.1321.03133.89432.889368.52.984BGB
HCG SerPl-sCnc2119-68.8952.992276.06392.256531.92.704GBG
Globulin Ser-mCnc2336-610.9121.03728.03327.038458.42.409BGB
Prot SerPl-mCnc2885-215.1050.982102.826104.717448.82.566BG
Retics/100 RBC Fr4679-717.7176.37241.0066.436516.02.522BGB
Bilirub SerPl-mCnc1975-219.5470.95647.20249.362442.42.458GB
Urate SerPl-mCnc3084-120.1691.05044.92842.789415.02.823BGB
Albumin SerPl-mCnc1751-720.7571.118128.127114.598444.03.141BG
ALP SerPl-cCnc6768-627.9781.28970.34854.580443.22.561GB
Basophils Fr Bld Auto706-228.0432.11052.26624.774410.52.804BGB
Eosinophil Fr Bld Auto713-828.0812.55552.91520.711410.32.522BGB
ALT SerPl-cCnc1742-628.4141.11058.15152.369430.12.361BGB
Eosinophil # Bld Auto711-228.9202.50160.02124.002409.52.746BGB
Basophils # Bld Auto704-729.5284.87752.95710.858411.12.571BGB
AST SerPl-cCnc1920-830.2911.05578.03573.977431.82.461BGB
Monocytes Fr Bld Auto5905-534.4105.74056.1199.776464.52.384BGB
Neutrophils Fr Bld Auto770-834.6861.88592.70249.168468.33.141GB
Lymphocytes Fr Bld Auto736-934.8261.797114.23163.560464.92.946BG
Neutrophils # Bld Auto752-634.9321.76875.97542.971457.92.461BGB
Monocytes # Bld Auto742-735.7443.63683.95823.090470.42.358BGB
Lymphocytes # Bld Auto731-037.1341.96399.13850.498462.72.622BG
PMV Bld Qn28542-937.99810.01967.0016.687254.62.119BGB
Sp Gr Ur Qn Strip5811-549.28433.62581.5782.426581.01.782GBGB
RBC # UrnS HPF5808-149.98812.81583.5046.516619.82.115GB
pH Ur Strip-sCnc5803-251.02036.49470.0011.918594.11.295BGB
Trigl SerPl-mCnc2571-8108.38042.058225.9535.372498.32.121GB
ESR Bld Qn Westrgrn4537-7125.98321.147246.16611.641672.52.085GB
Cholest SerPl-mCnc2093-3127.3271.059204.759193.346503.51.933BGB
Hgb A1c Fr Bld4548-4132.945113.022216.1751.913328.81.076GB
Mean Glucose Bld gHb Est-mCnc27353-2137.837120.280266.9062.219325.61.076GB
Ferritin SerPl-mCnc2276-4151.26134.569213.9746.190622.91.457GB
T4 SerPl-mCnc3026-2154.97447.040202.1184.297629.61.357BGB
Iron SerPl-mCnc2498-4160.88383.993266.2113.169628.11.846BGB
TIBC SerPl-mCnc2500-7166.06627.024248.1189.182649.01.717BG
TSH SerPl-aCnc3016-3232.13355.991368.1036.574578.21.579BGB
Cholest/HDLc SerPl-mRto9830-1247.117131.251367.0342.796348.01.234GB
VLDLc SerPl-mCnc2092-5253.763175.665363.8712.071563.90.993GB
B-LP SerPl Calc-sCnc14815-5264.197166.951346.0862.073578.80.881BGB
LDLc SerPl-mCnc2090-9273.672172.881343.0691.984517.40.881BGB
HDLc SerPl-mCnc2086-7276.331146.957370.0702.518528.61.188BG
PSA SerPl-mCnc2857-1350.02475.940380.0375.004392.91.076BGB

Listed for each test are the LOINC (Logical Observation Identifiers Names and Code) name and code; the median repeat interval and standard deviation for all 100,000 repeat intervals; the minimum and maximum median repeat intervals of the 20 value bins and their ratio; the entropy; and the category: “bad-good” (BG), “bad-good-bad” (BGB), “good-bad” (GB), “good-bad-good” (GBG), and “good-bad-good-bad” (GBGB). Repeat intervals are given in days.

Listed for each test are the LOINC (Logical Observation Identifiers Names and Code) name and code; the median repeat interval and standard deviation for all 100,000 repeat intervals; the minimum and maximum median repeat intervals of the 20 value bins and their ratio; the entropy; and the category: “bad-good” (BG), “bad-good-bad” (BGB), “good-bad” (GB), “good-bad-good” (GBG), and “good-bad-good-bad” (GBGB). Repeat intervals are given in days.

Defining normality

Reference ranges of laboratory test values are defined by sampling a healthy population and recording the upper and lower nth percentiles [9]–[11]. There are numerous challenges with determining these ranges and in using them for clinical decision-making. Many factors such as age, sex, and sampling bias can influence these values; it can be difficult to identify healthy individuals; and there is disagreement over which statistical techniques and percentiles to use [12]–[15]. Furthermore, it is unclear how useful reference ranges are in clinical decision-making since there is a distinction between a reference limit and the value that will actually change a physician's clinical decision [16]–[19]. The latter is based not on healthy population percentiles, but rather the types of clinical actions that are available to the physician and his or her clinical knowledge, prior experience, and intuition. Can we quantify this to define a new robust measure of laboratory test value normality that reflects clinical expertise? We defined repeat interval as the amount of time it took for physicians to repeat the same test in the same patient. A repeat interval consists of two tests—an initial test and a repeat test. In this study, we looked at the relationship between the result of the initial test and when the repeat test is ordered. To study this relationship, for each of the 97 laboratory tests we partitioned the 100,000 repeat intervals into 20 equal-size bins based on the result of the initial test. For example, the first bin contains the 5,000 repeat intervals with the smallest initial test result values, and the 20th bin contains the 5,000 repeat intervals with the highest initial values. For each bin, we calculated the median repeat interval duration and the 25th and 75th percentiles. We did not use the result of the repeat test in this study—we only measured the amount of time that had elapsed since the initial test. Note how this differs from traditional EBM studies, in which physicians perform interventions, and then the patient outcomes are measured. In this study, we start with data about the patients (their initial laboratory test results), and then measure the interventions chosen by their physicians (the time until the test was repeated). In other words, we are examining the physicians as a way of indirectly learning more about the patients. In the first part of this study, we used repeat intervals to examine normality in laboratory tests. Whereas laboratory test reference ranges suggest there are only two states of patient health, normal and abnormal, we hypothesized that repeat intervals would reveal more subtle patterns that demonstrate the variability among patients and the different clinical contexts in which they are seen.

Identifying subpopulations

To determine if we can automatically identify the various factors that can influence physician behavior, such as patient demographics and clinical settings, we calculated the median repeat intervals for white blood cells (WBC) for different pediatric age groups and for inpatient vs outpatient visits. If these subpopulations indeed represent distinct patient states that have different clinical meaning, then differences in normative behavior might be detectable.

Measuring informativeness

The initial test result may or may not influence when the repeat test is ordered. We used entropy as a measure of how much the median repeat interval varies across the 20 bins for each test. If all 20 median repeat intervals are equal, then the initial test result provides no information towards predicting when the repeat test will be ordered, and the entropy is therefore zero. Because physician behavior is not being affected by the result of the test, we hypothesize that some tests with low entropy are being over-ordered. In contrast, tests whose initial result has a greater influence over physician behavior will have higher entropy, suggesting that those tests are more informative. In order to calculate entropy, we first discretized the median repeat interval for each laboratory test's 20 value bins by mapping it to one of 20 frequently observed time periods (Table 2). These time periods were determined by combining the repeat intervals for all 97 laboratory tests and noting from its frequency distribution that there are approximately 20 peaks (Figure 1a). The points between the peaks with the fewest repeat intervals were chosen as the boundaries of the time periods. This ensured that most repeat intervals would be near the center of a time period rather than at the boundary, thus making the results less sensitive to the precise location of the time period boundaries. Entropies were then calculated using the equation -Sum[p(x)*log2(p(x))] where p(x) is the fraction of a laboratory test's 20 value bins whose median repeat intervals fall within time period x. For example, if a laboratory test has 10 value bins whose median repeat intervals fall within time period 6 (2 days), 5 value bins that fall within time period 4 (12 hours), and 5 value bins that fall within time period 7 (3 days), then the entropy is −[0.5*log2(0.5)+0.25*log2(0.25)+0.25*log2(0.25)] = 1.5.
Table 2

Entropy time periods.

Time PeriodDescriptionStart (Days)Peak (Days)
12 hours0.0000.093
24 hours0.1030.170
38 hours0.1880.342
412 hours0.4180.510
524 hours0.6241.028
62 days1.5332.070
73 days2.5283.088
84 days3.4134.169
97 days5.6276.873
102 weeks10.25313.840
113 weeks16.90520.648
124 weeks25.21927.872
135 weeks30.80334.042
146 weeks37.62241.579
152 months45.95262.029
163 months75.76392.536
174 months113.024124.911
186 months152.567186.345
191 year251.540375.253
202 years683.756755.667

Listed are the start of each time period and the most common repeat interval (peak).

Figure 1

Repeat intervals for 97 common laboratory tests.

(a) Frequency distribution of repeat intervals for all labs. Vertical bars indicate the boundaries used in the entropy calculations to convert repeat intervals to one of 20 discrete categories. (b) Median repeat interval for each of 97 tests. Vertical bars indicate the 25th and 75th percentiles.

Repeat intervals for 97 common laboratory tests.

(a) Frequency distribution of repeat intervals for all labs. Vertical bars indicate the boundaries used in the entropy calculations to convert repeat intervals to one of 20 discrete categories. (b) Median repeat interval for each of 97 tests. Vertical bars indicate the 25th and 75th percentiles. Listed are the start of each time period and the most common repeat interval (peak).

Results

Table 2 and Figure 1a show that the frequency of 9.7 million repeat intervals across the 97 tests has approximately 20 peaks, with 24 hours being the most common, followed by 2 days, 1 year, 7 days, and 6 months. When looking at individual laboratory tests, Table 1 and Figure 1b show that the median repeat interval can range from as small as 3 hours for blood gases to as large as year for cholesterol and prostate-specific antigen (PSA), with a large variance for most tests. However, the repeat intervals can be highly dependent on the initial value of the test as well as the patient population and clinical setting. The next three sections describe this relationship by testing three hypotheses.

Can physician group intelligence derive knowledge that all physicians already know, but can be difficult to quantify?

The reference ranges for white blood cell count (WBC) in adult patients at BWH and MGH are 4.0–10.0 and 4.5–11.0, respectively [6], [7]. In Figure 2a, which illustrates the repeat intervals for WBC, we can see a complex relationship between the initial WBC value and when physicians order a second WBC test. In general, the repeat interval for WBC is larger within the hospital reference ranges (indicated by markers on the horizontal axis) than outside. However, it is not a binary response. Rather, there is a continuum, with a maximum median repeat interval of almost two weeks at an initial WBC value of 6, and gradually decreasing at larger or smaller values. As seen in Figure 2b and Figure 2c, a similar pattern exists for other tests, such as high-density lipoprotein (HDLc) and hemoglobin A1c (HbA1c), where the largest repeat intervals occur when the initial test results are within the hospital reference ranges, and the intervals decrease the further outside those ranges.
Figure 2

The median repeat interval for different initial (a) WBC, (b) HDLc, (c) HbA1c, and (d) hCG values.

Error bars represent the 25th and 75th percentiles. Triangles indicate reference values for BWH (black) and MGH (gray).

The median repeat interval for different initial (a) WBC, (b) HDLc, (c) HbA1c, and (d) hCG values.

Error bars represent the 25th and 75th percentiles. Triangles indicate reference values for BWH (black) and MGH (gray). The vertical bars in Figure 2 represent the 25th and 75th percentiles of repeat intervals. The initial test result not only affects the median repeat interval, but it also greatly affects the variance. If we think about an initial test result being followed by a large median repeat interval as a “good” test result, and an initial test result being followed by a small median repeat interval as a “bad” test result, then the amount of variance corresponds to the degree of consensus among physicians on whether a particular test result is “good” or “bad”. For example, on average, a WBC of 6 is “good”, but the large variance means that other information is needed to determine the patient's state of health. At the upper value of the reference range (10.0–11.0), the repeat interval is smaller, but there is still large variability. However, once the WBC is greater than 16, then there is agreement among physicians that the result is “bad”. Laboratory tests can be classified according to how their repeat intervals vary with different initial values. Although WBC is “good” in mid-range values and “bad” at the low and high extremes (“bad-good-bad”, or “BGB”), the repeat intervals for HDLc are largest at high values (“BG”), and the repeat intervals for HbA1c are largest at low values (“GB”). Table 1 shows that most laboratory tests fall into one of these three categories, with 44 BGB tests (e.g., sodium and glucose), 19 BG tests (e.g., hematocrit and vancomycin), and 24 GB tests (e.g., bilirubin and erythrocyte sedimentation rate (ESR)). An exception is human chorionic gonadotropin (hCG), which has not one, but two “good” states (“GBG”) depending on whether the patient is pregnant (Figure 2d). Although we are not arguing that this method should replace the standard way of determining laboratory test reference ranges, we want to highlight how remarkable it is that repeat intervals alone, without any additional information about the patients' health, can be used to derive physician consensus around what it means for a test result to be “normal”. In other words, we can use physician group intelligence to quantify the significance of different test results and determine the values that require immediate action.

Can group intelligence capture the knowledge of subsets of physicians that treat specific patient populations?

Normality as defined by physician behavior can vary greatly with different subpopulations. In neonates, for example, the typical WBC is higher than in adult populations. Figure 3a shows that physicians adjust their ordering behavior for this, with a peak time to repeat for patients less than 1 month old at a WBC of 16.3 (58,121 repeat intervals). As pediatric patients age, the “ideal” WBC value decreases and the maximum repeat interval increases. For patients 1–5 months the preferred value is 12.6 (16,237 repeat intervals), and for patients 6–23 months the preferred value is 8.9 (32,556 repeat intervals). The median time to repeat of WBC is at a maximum of 153 days when patients are between 2–5 years old (33,666 repeat intervals). Beyond this age, physician behavior mimics that seen throughout adulthood (38,051 repeat intervals). However, while the preferred WBC remains consistent until old age, the repeat intervals decrease for all values in elderly populations.
Figure 3

Factors that affect repeat interval, including (a) age and (b) inpatient vs outpatient setting.

Error bars represent the 25th and 75th percentiles.

Factors that affect repeat interval, including (a) age and (b) inpatient vs outpatient setting.

Error bars represent the 25th and 75th percentiles.

Can group intelligence identify inconsistencies in clinical behavior and situations where the frequency of ordering laboratory tests can be reduced?

Figure 3b shows that physician ordering behavior for WBC also changes when patients are in an inpatient setting compared to when they are relatively healthy in an outpatient setting. In both cases, the maximum repeat interval is at a WBC value of about 6. However, that interval is 22.9 hours for inpatients (365,769 repeat intervals) and 59.1 days for outpatients (481,591 repeat intervals). Thus, the same laboratory test result can have a dramatically different effect on clinical decisions depending on physician's perceived state of the patient. It might also suggest that hospital guidelines in an inpatient setting influence ordering behavior in ways that are counterintuitive to physicians' true estimate of risk. The extent to which the initial value of a laboratory test affects the repeat interval can indicate how informative that test is. For nearly all 97 laboratory tests studied, the initial value does indeed influence the repeat interval greatly (Table 1). For example, the ratio between WBC's best bin's repeat interval (15.4 days) and the worst (0.77 days) is 20-fold. There was at least a 2-fold difference in 87 tests, a 10-fold difference in 35 tests, a 50-fold difference in 13 tests, and a more than 100-fold difference in three tests (serum protein, albumin, and cholesterol). However, this does not tell the full story. A test whose repeat interval is the same in nearly all cases except for the most extreme values might provide less information to a physician, on average, than a test whose repeat intervals vary across the full range of values for that test. This can be quantified using entropy. Of the 97 tests, albumin and neutrophil fraction had the highest observed entropies (3.141), meaning that their values, more than any other tests, had the greatest influence on physician behavior (Table 1). There are several explanations for why the entropy can be low for certain laboratory tests: a) they can be routinely ordered as part of a hospital protocol (e.g. Troponin T has zero entropy), b) they are ordered automatically as part of a panel but are not generally the reason for which the panel was ordered (e.g. mean corpuscular volume (MCV) in a complete blood count (CBC) has an entropy of 1.076), or c) they are part of a screening protocol in which the vast majority of the test results are normal (e.g. prostate-specific antigen (PSA) has an entropy of 1.076 because 75% of its values are less than 3.6 and are not repeated for a one year).

Discussion

We introduced this study by enumerating three questions that we sought to answer, at least preliminarily in a study of two large academic hospitals. We have shown that we can use collective physician behavior to identify normal ranges that correspond to the published normal ranges used in these institutions but without the threshold effect of strict limits and instead providing a smooth function relating these values to normality and disease acuity. Secondly, we have shown that these normative ranges are very specific to the subpopulations being treated going from adult to childhood and the neonatal period where the personalized interpretation of these laboratory studies is markedly different. Thirdly, we have shown that clinical setting, the grouping of tests into panels, and screening guidelines can potentially lead to overuse of laboratory tests. This automated form of EBM does not depend on an ongoing knowledge extraction process from experts; it is driven directly from aggregate physician behavior as seen in EHRs. If styles of practice change, if the meaning of particular clinical variables and their values are understood differently over time, if additional phenotypes such as genomic are introduced then the normative practice for the patient's state induced from physician behavior will automatically be changed. This study represents only a beginning in developing an automated application of physician group intelligence, similar to what has been done with “crowdsourcing” for scientific discovery in other fields [20]–[23]. There are far more sources of data that are accessible beyond laboratory data, that are driven by physician behavior and their integrated understanding of the patient's state. For example, one could examine which medications are prescribed and the number of refills included on the initial prescriptions, which procedures are ordered and the time intervals between them, how often follow-up visits are scheduled, and the number of different physicians that treat a patient. These are processes, not outcome measures, but in aggregate represent a consensus estimate. As in other applications of group intelligence, the use of physician behavior rather than measured outcomes to drive the personalization of medical practice has some obvious risks that are built upon several underlying assumptions. The most important of these is that physicians in aggregate are well informed of the current state of the art. Further, over large populations of patients, sufficient numbers of decisions can be measured that across the varying states of patients there will be robust characterizations of the patient subpopulations. These assumptions can be tested empirically in the future by comparing physician behavior at different institutions and determining, for example, how rapidly physician behavior changes to account for the emergence of innovative and expert-approved clinical practices. The intent of this study was not to draw conclusions about specific laboratory tests. A more detailed analysis of which tests are grouped into panels, how policies vary across different clinics, and what changes have been seen over time would be needed for that. Rather, our goal was to demonstrate that a wealth of often overlooked information about physician behavior exists in EHRs, which could provide an important source of data for future EBM research.
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1.  Need for revisiting the concept of reference values.

Authors:  J Henny; C Petitclerc; X Fuentes-Arderiu; P H Petersen; J M Queraltó; F Schiele; G Siest
Journal:  Clin Chem Lab Med       Date:  2000-07       Impact factor: 3.694

Review 2.  Reference intervals: an update.

Authors:  Paul S Horn; Amadeo J Pesce
Journal:  Clin Chim Acta       Date:  2003-08       Impact factor: 3.786

Review 3.  Normality: the unreachable star?

Authors:  Claude Petitclerc
Journal:  Clin Chem Lab Med       Date:  2004       Impact factor: 3.694

4.  Crowdsourcing scientific innovation.

Authors:  S Claiborne Johnston; Stephen L Hauser
Journal:  Ann Neurol       Date:  2009-06       Impact factor: 10.422

5.  International Federation of Clinical Chemistry (IFCC), Scientific Committee, Clinical Section, Expert Panel on Theory of Reference Values, and International Committee for Standardization in Haematology (ICSH), Standing Committee on Reference Values. Approved Recommendation (1986) on the theory of reference values. Part 1. The concept of reference values.

Authors:  H E Solberg
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6.  Evidence based medicine: what it is and what it isn't.

Authors:  D L Sackett; W M Rosenberg; J A Gray; R B Haynes; W S Richardson
Journal:  BMJ       Date:  1996-01-13

7.  Calculating the benefits of a Research Patient Data Repository.

Authors:  Ruth Nalichowski; Diane Keogh; Henry C Chueh; Shawn N Murphy
Journal:  AMIA Annu Symp Proc       Date:  2006

8.  A crowdsourcing evaluation of the NIH chemical probes.

Authors:  Tudor I Oprea; Cristian G Bologa; Scott Boyer; Ramona F Curpan; Robert C Glen; Andrew L Hopkins; Christopher A Lipinski; Garland R Marshall; Yvonne C Martin; Liliana Ostopovici-Halip; Gilbert Rishton; Oleg Ursu; Roy J Vaz; Chris Waller; Herbert Waldmann; Larry A Sklar
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

9.  Reference intervals developed from data for hospitalized patients: computerized method based on combination of laboratory and diagnostic data.

Authors:  T Kouri; V Kairisto; A Virtanen; E Uusipaikka; A Rajamäki; H Finneman; K Juva; T Koivula; V Näntö
Journal:  Clin Chem       Date:  1994-12       Impact factor: 8.327

10.  The Spectral Game: leveraging Open Data and crowdsourcing for education.

Authors:  Jean-Claude Bradley; Robert J Lancashire; Andrew Sid Lang; Antony J Williams
Journal:  J Cheminform       Date:  2009-06-26       Impact factor: 5.514

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  18 in total

1.  Characterizing Physicians Practice Phenotype from Unstructured Electronic Health Records.

Authors:  Sanjoy Dey; Yajuan Wang; Roy J Byrd; Kenney Ng; Steven R Steinhubl; Christopher deFilippi; Walter F Stewart
Journal:  AMIA Annu Symp Proc       Date:  2017-02-10

2.  Survival Analysis with Electronic Health Record Data: Experiments with Chronic Kidney Disease.

Authors:  Yolanda Hagar; David Albers; Rimma Pivovarov; Herbert Chase; Vanja Dukic; Noémie Elhadad
Journal:  Stat Anal Data Min       Date:  2014-08-19       Impact factor: 1.051

3.  Identifying and mitigating biases in EHR laboratory tests.

Authors:  Rimma Pivovarov; David J Albers; Jorge L Sepulveda; Noémie Elhadad
Journal:  J Biomed Inform       Date:  2014-04-13       Impact factor: 6.317

4.  Taking advantage of continuity of care documents to populate a research repository.

Authors:  Jeffrey G Klann; Michael Mendis; Lori C Phillips; Alyssa P Goodson; Beatriz H Rocha; Howard S Goldberg; Nich Wattanasin; Shawn N Murphy
Journal:  J Am Med Inform Assoc       Date:  2014-10-28       Impact factor: 4.497

5.  Artificial Intelligence Assesses Clinicians' Adherence to Asthma Guidelines Using Electronic Health Records.

Authors:  Elham Sagheb; Chung-Il Wi; Jungwon Yoon; Hee Yun Seol; Pragya Shrestha; Euijung Ryu; Miguel Park; Barbara Yawn; Hongfang Liu; Jason Homme; Young Juhn; Sunghwan Sohn
Journal:  J Allergy Clin Immunol Pract       Date:  2021-11-17

6.  Grappling with the Future Use of Big Data for Translational Medicine and Clinical Care.

Authors:  S Murphy; V Castro; K Mandl
Journal:  Yearb Med Inform       Date:  2017-09-11

7.  An unsupervised learning method to identify reference intervals from a clinical database.

Authors:  Sarah Poole; Lee Frederick Schroeder; Nigam Shah
Journal:  J Biomed Inform       Date:  2015-12-19       Impact factor: 6.317

Review 8.  Automated methods for the summarization of electronic health records.

Authors:  Rimma Pivovarov; Noémie Elhadad
Journal:  J Am Med Inform Assoc       Date:  2015-04-15       Impact factor: 4.497

9.  Assessing Screening Guidelines for Cardiovascular Disease Risk Factors using Routinely Collected Data.

Authors:  Jaspreet Pannu; Sarah Poole; Neil Shah; Nigam H Shah
Journal:  Sci Rep       Date:  2017-07-26       Impact factor: 4.379

10.  Estimating summary statistics for electronic health record laboratory data for use in high-throughput phenotyping algorithms.

Authors:  D J Albers; N Elhadad; J Claassen; R Perotte; A Goldstein; G Hripcsak
Journal:  J Biomed Inform       Date:  2018-01-31       Impact factor: 6.317

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