Literature DB >> 29063545

Grappling with the Future Use of Big Data for Translational Medicine and Clinical Care.

S Murphy, V Castro, K Mandl.   

Abstract

Objectives: Although patients may have a wealth of imaging, genomic, monitoring, and personal device data, it has yet to be fully integrated into clinical care.
Methods: We identify three reasons for the lack of integration. The first is that "Big Data" is poorly managed by most Electronic Medical Record Systems (EMRS). The data is mostly available on "cloud-native" platforms that are outside the scope of most EMRs, and even checking if such data is available on a patient often must be done outside the EMRS. The second reason is that extracting features from the Big Data that are relevant to healthcare often requires complex machine learning algorithms, such as determining if a genomic variant is protein-altering. The third reason is that applications that present Big Data need to be modified constantly to reflect the current state of knowledge, such as instructing when to order a new set of genomic tests. In some cases, applications need to be updated nightly.
Results: A new architecture for EMRS is evolving which could unite Big Data, machine learning, and clinical care through a microservice-based architecture which can host applications focused on quite specific aspects of clinical care, such as managing cancer immunotherapy.
Conclusion: Informatics innovation, medical research, and clinical care go hand in hand as we look to infuse science-based practice into healthcare. Innovative methods will lead to a new ecosystem of applications (Apps) interacting with healthcare providers to fulfill a promise that is still to be determined. Georg Thieme Verlag KG Stuttgart.

Entities:  

Mesh:

Year:  2017        PMID: 29063545      PMCID: PMC6239222          DOI: 10.15265/IY-2017-020

Source DB:  PubMed          Journal:  Yearb Med Inform        ISSN: 0943-4747


  44 in total

1.  Using electronic medical records to enable large-scale studies in psychiatry: treatment resistant depression as a model.

Authors:  R H Perlis; D V Iosifescu; V M Castro; S N Murphy; V S Gainer; J Minnier; T Cai; S Goryachev; Q Zeng; P J Gallagher; M Fava; J B Weilburg; S E Churchill; I S Kohane; J W Smoller
Journal:  Psychol Med       Date:  2011-06-20       Impact factor: 7.723

2.  Integrating data from natural language processing into a clinical information system.

Authors:  S B Johnson; C Friedman
Journal:  Proc AMIA Annu Fall Symp       Date:  1996

3.  SMART on FHIR Genomics: facilitating standardized clinico-genomic apps.

Authors:  Gil Alterovitz; Jeremy Warner; Peijin Zhang; Yishen Chen; Mollie Ullman-Cullere; David Kreda; Isaac S Kohane
Journal:  J Am Med Inform Assoc       Date:  2015-07-21       Impact factor: 4.497

4.  The false security of blind dates: chrononymization's lack of impact on data privacy of laboratory data.

Authors:  J J Cimino
Journal:  Appl Clin Inform       Date:  2012-10-24       Impact factor: 2.342

5.  Predicting Suicidal Behavior From Longitudinal Electronic Health Records.

Authors:  Yuval Barak-Corren; Victor M Castro; Solomon Javitt; Alison G Hoffnagle; Yael Dai; Roy H Perlis; Matthew K Nock; Jordan W Smoller; Ben Y Reis
Journal:  Am J Psychiatry       Date:  2016-09-09       Impact factor: 18.112

6.  Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources.

Authors:  Sheng Yu; Katherine P Liao; Stanley Y Shaw; Vivian S Gainer; Susanne E Churchill; Peter Szolovits; Shawn N Murphy; Isaac S Kohane; Tianxi Cai
Journal:  J Am Med Inform Assoc       Date:  2015-04-29       Impact factor: 4.497

7.  Driving Innovation in Health Systems through an Apps-Based Information Economy.

Authors:  Kenneth D Mandl; Joshua C Mandel; Isaac S Kohane
Journal:  Cell Syst       Date:  2015-07       Impact factor: 10.304

8.  DO CANCER CLINICAL TRIAL POPULATIONS TRULY REPRESENT CANCER PATIENTS? A COMPARISON OF OPEN CLINICAL TRIALS TO THE CANCER GENOME ATLAS.

Authors:  Nophar Geifman; Atul J Butte
Journal:  Pac Symp Biocomput       Date:  2016

9.  Validation of electronic health record phenotyping of bipolar disorder cases and controls.

Authors:  Victor M Castro; Jessica Minnier; Shawn N Murphy; Isaac Kohane; Susanne E Churchill; Vivian Gainer; Tianxi Cai; Alison G Hoffnagle; Yael Dai; Stefanie Block; Sydney R Weill; Mireya Nadal-Vicens; Alisha R Pollastri; J Niels Rosenquist; Sergey Goryachev; Dost Ongur; Pamela Sklar; Roy H Perlis; Jordan W Smoller
Journal:  Am J Psychiatry       Date:  2014-12-12       Impact factor: 18.112

10.  A General Framework for Considering Selection Bias in EHR-Based Studies: What Data Are Observed and Why?

Authors:  Sebastien Haneuse; Michael Daniels
Journal:  EGEMS (Wash DC)       Date:  2016-08-31
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  1 in total

1.  Social innovation for life expectancy extension utilizing a platform-centered system used in the Iwaki health promotion project: A protocol paper.

Authors:  Shigeyuki Nakaji; Kazushige Ihara; Kaori Sawada; Stefano Parodi; Takashi Umeda; Ippei Takahashi; Koichi Murashita; Shizuka Kurauchi; Itoyo Tokuda
Journal:  SAGE Open Med       Date:  2021-03-19
  1 in total

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