Literature DB >> 23733957

Kinetics of gene derepression by ERK signaling.

Bomyi Lim1, Núria Samper, Hang Lu, Christine Rushlow, Gerardo Jiménez, Stanislav Y Shvartsman.   

Abstract

ERK controls gene expression in development, but mechanisms that link ERK activation to changes in transcription are not well understood. We used high-resolution analysis of signaling dynamics to study transcriptional interpretation of ERK signaling during Drosophila embryogenesis, at a stage when ERK induces transcription of intermediate neuroblasts defective (ind), a gene essential for patterning of the nerve cord. ERK induces ind by antagonizing its repression by Capicua (Cic), a transcription factor that acts as a sensor of receptor tyrosine kinases in animal development and human diseases. A recent study established that active ERK reduces the nuclear levels of Cic, but it remained unclear whether this is required for the induction of Cic target genes. We provide evidence that Cic binding sites within the regulatory DNA of ind control the spatial extent and the timing of ind expression. At the same time, we demonstrate that ERK induces ind before Cic levels in the nucleus are reduced. Based on this, we propose that ERK-dependent relief of gene repression by Cic is a two-step process, in which fast reduction of repressor activity is followed by slower changes in nuclear localization and overall protein levels. This may be a common feature of systems in which ERK induces genes by relief of transcriptional repression.

Entities:  

Keywords:  pattern formation; signal transduction; systems biology

Mesh:

Substances:

Year:  2013        PMID: 23733957      PMCID: PMC3690897          DOI: 10.1073/pnas.1303635110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  59 in total

1.  Relief of gene repression by torso RTK signaling: role of capicua in Drosophila terminal and dorsoventral patterning.

Authors:  G Jiménez; A Guichet; A Ephrussi; J Casanova
Journal:  Genes Dev       Date:  2000-01-15       Impact factor: 11.361

2.  Continuous ERK activation downregulates antiproliferative genes throughout G1 phase to allow cell-cycle progression.

Authors:  Takuya Yamamoto; Miki Ebisuya; Fumito Ashida; Kazuo Okamoto; Shin Yonehara; Eisuke Nishida
Journal:  Curr Biol       Date:  2006-06-20       Impact factor: 10.834

3.  Computational models for neurogenic gene expression in the Drosophila embryo.

Authors:  Robert P Zinzen; Kate Senger; Mike Levine; Dmitri Papatsenko
Journal:  Curr Biol       Date:  2006-06-06       Impact factor: 10.834

4.  A MAPK docking site is critical for downregulation of Capicua by Torso and EGFR RTK signaling.

Authors:  Sergio Astigarraga; Rona Grossman; Julieta Díaz-Delfín; Carme Caelles; Ze'ev Paroush; Gerardo Jiménez
Journal:  EMBO J       Date:  2007-01-25       Impact factor: 11.598

Review 5.  How the Dorsal gradient works: insights from postgenome technologies.

Authors:  Joung-Woo Hong; David A Hendrix; Dmitri Papatsenko; Michael S Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-22       Impact factor: 11.205

Review 6.  Vnd/nkx, ind/gsh, and msh/msx: conserved regulators of dorsoventral neural patterning?

Authors:  R A Cornell; T V Ohlen
Journal:  Curr Opin Neurobiol       Date:  2000-02       Impact factor: 6.627

7.  Convergence of dorsal, dpp, and egfr signaling pathways subdivides the drosophila neuroectoderm into three dorsal-ventral columns.

Authors:  T von Ohlen; C Q Doe
Journal:  Dev Biol       Date:  2000-08-15       Impact factor: 3.582

8.  Nuclear trapping shapes the terminal gradient in the Drosophila embryo.

Authors:  Mathieu Coppey; Alistair N Boettiger; Alexander M Berezhkovskii; Stanislav Y Shvartsman
Journal:  Curr Biol       Date:  2008-06-24       Impact factor: 10.834

Review 9.  RTK/Ras/MAPK signaling.

Authors:  Meera V Sundaram
Journal:  WormBook       Date:  2006-02-11

10.  The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila.

Authors:  Hsiao-Lan Liang; Chung-Yi Nien; Hsiao-Yun Liu; Mark M Metzstein; Nikolai Kirov; Christine Rushlow
Journal:  Nature       Date:  2008-10-19       Impact factor: 49.962

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  31 in total

1.  Studies of morphogens: keep calm and carry on.

Authors:  Angelike Stathopoulos; Dagmar Iber
Journal:  Development       Date:  2013-10       Impact factor: 6.868

2.  COP9 signalosome subunits protect Capicua from MAPK-dependent and -independent mechanisms of degradation.

Authors:  Annabelle Suisse; DanQing He; Kevin Legent; Jessica E Treisman
Journal:  Development       Date:  2017-06-15       Impact factor: 6.868

3.  Temporal ordering and registration of images in studies of developmental dynamics.

Authors:  Carmeline J Dsilva; Bomyi Lim; Hang Lu; Amit Singer; Ioannis G Kevrekidis; Stanislav Y Shvartsman
Journal:  Development       Date:  2015-04-01       Impact factor: 6.868

4.  Co-culture Activation of MAP Kinase in Drosophila S2 Cells.

Authors:  Josefa Steinhauer
Journal:  Methods Mol Biol       Date:  2017

5.  Minibrain and Wings apart control organ growth and tissue patterning through down-regulation of Capicua.

Authors:  Liu Yang; Sayantanee Paul; Kenneth G Trieu; Lucas G Dent; Francesca Froldi; Marta Forés; Kaitlyn Webster; Kellee R Siegfried; Shu Kondo; Kieran Harvey; Louise Cheng; Gerardo Jiménez; Stanislav Y Shvartsman; Alexey Veraksa
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-06       Impact factor: 11.205

Review 6.  The Capicua tumor suppressor: a gatekeeper of Ras signaling in development and cancer.

Authors:  Lucía Simón-Carrasco; Gerardo Jiménez; Mariano Barbacid; Matthias Drosten
Journal:  Cell Cycle       Date:  2018       Impact factor: 4.534

7.  Capicua controls Toll/IL-1 signaling targets independently of RTK regulation.

Authors:  Aikaterini Papagianni; Marta Forés; Wanqing Shao; Shuonan He; Nina Koenecke; María José Andreu; Núria Samper; Ze'ev Paroush; Sergio González-Crespo; Julia Zeitlinger; Gerardo Jiménez
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-05       Impact factor: 11.205

Review 8.  Stepwise Progression of Embryonic Patterning.

Authors:  Jeremy E Sandler; Angelike Stathopoulos
Journal:  Trends Genet       Date:  2016-05-24       Impact factor: 11.639

9.  Mapping the binding interface of ERK and transcriptional repressor Capicua using photocrosslinking.

Authors:  Alan S Futran; Saw Kyin; Stanislav Y Shvartsman; A James Link
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-29       Impact factor: 11.205

10.  A Systematic Ensemble Approach to Thermodynamic Modeling of Gene Expression from Sequence Data.

Authors:  Md Abul Hassan Samee; Bomyi Lim; Núria Samper; Hang Lu; Christine A Rushlow; Gerardo Jiménez; Stanislav Y Shvartsman; Saurabh Sinha
Journal:  Cell Syst       Date:  2015-12-23       Impact factor: 10.304

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