Literature DB >> 19104040

How the Dorsal gradient works: insights from postgenome technologies.

Joung-Woo Hong1, David A Hendrix, Dmitri Papatsenko, Michael S Levine.   

Abstract

Gradients of extracellular signaling molecules and transcription factors are used in a variety of developmental processes, including the patterning of the Drosophila embryo, the establishment of diverse neuronal cell types in the vertebrate neural tube, and the anterior-posterior patterning of vertebrate limbs. Here, we discuss how a gradient of the maternal transcription factor Dorsal produces complex patterns of gene expression across the dorsal-ventral (DV) axis of the early Drosophila embryo. The identification of 60-70 Dorsal target genes, along with the characterization of approximately 35 associated regulatory DNAs, suggests that there are at least six different regulatory codes driving diverse DV expression profiles.

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Year:  2008        PMID: 19104040      PMCID: PMC2629255          DOI: 10.1073/pnas.0806476105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  50 in total

1.  dorsal-twist interactions establish snail expression in the presumptive mesoderm of the Drosophila embryo.

Authors:  Y T Ip; R E Park; D Kosman; K Yazdanbakhsh; M Levine
Journal:  Genes Dev       Date:  1992-08       Impact factor: 11.361

2.  The dorsal morphogen gradient regulates the mesoderm determinant twist in early Drosophila embryos.

Authors:  J Jiang; D Kosman; Y T Ip; M Levine
Journal:  Genes Dev       Date:  1991-10       Impact factor: 11.361

3.  Binding affinities and cooperative interactions with bHLH activators delimit threshold responses to the dorsal gradient morphogen.

Authors:  J Jiang; M Levine
Journal:  Cell       Date:  1993-03-12       Impact factor: 41.582

4.  A short, disordered protein region mediates interactions between the homeodomain of the yeast alpha 2 protein and the MCM1 protein.

Authors:  A K Vershon; A D Johnson
Journal:  Cell       Date:  1993-01-15       Impact factor: 41.582

5.  Sonic hedgehog mediates the polarizing activity of the ZPA.

Authors:  R D Riddle; R L Johnson; E Laufer; C Tabin
Journal:  Cell       Date:  1993-12-31       Impact factor: 41.582

6.  DNA bending and orientation-dependent function of YY1 in the c-fos promoter.

Authors:  S Natesan; M Z Gilman
Journal:  Genes Dev       Date:  1993-12       Impact factor: 11.361

7.  The high mobility group protein HMG I(Y) is required for NF-kappa B-dependent virus induction of the human IFN-beta gene.

Authors:  D Thanos; T Maniatis
Journal:  Cell       Date:  1992-11-27       Impact factor: 41.582

8.  Shadow enhancers as a source of evolutionary novelty.

Authors:  Joung-Woo Hong; David A Hendrix; Michael S Levine
Journal:  Science       Date:  2008-09-05       Impact factor: 47.728

9.  The Drosophila rhomboid gene mediates the localized formation of wing veins and interacts genetically with components of the EGF-R signaling pathway.

Authors:  M A Sturtevant; M Roark; E Bier
Journal:  Genes Dev       Date:  1993-06       Impact factor: 11.361

10.  Individual dorsal morphogen binding sites mediate activation and repression in the Drosophila embryo.

Authors:  J Jiang; C A Rushlow; Q Zhou; S Small; M Levine
Journal:  EMBO J       Date:  1992-08       Impact factor: 11.598

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  64 in total

1.  A computational statistics approach for estimating the spatial range of morphogen gradients.

Authors:  Jitendra S Kanodia; Yoosik Kim; Raju Tomer; Zia Khan; Kwanghun Chung; John D Storey; Hang Lu; Philipp J Keller; Stanislav Y Shvartsman
Journal:  Development       Date:  2011-10-17       Impact factor: 6.868

Review 2.  Roles of the NF-kappaB pathway in lymphocyte development and function.

Authors:  Steve Gerondakis; Ulrich Siebenlist
Journal:  Cold Spring Harb Perspect Biol       Date:  2009-12-23       Impact factor: 10.005

3.  Dynamic repositioning of dorsal to two different kappaB motifs controls its autoregulation during immune response in Drosophila.

Authors:  Nirotpal Mrinal; Javaregowda Nagaraju
Journal:  J Biol Chem       Date:  2010-05-26       Impact factor: 5.157

4.  Endocytosis is required for Toll signaling and shaping of the Dorsal/NF-kappaB morphogen gradient during Drosophila embryogenesis.

Authors:  Viktor K Lund; Yvonne DeLotto; Robert DeLotto
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

Review 5.  Properties of developmental gene regulatory networks.

Authors:  Eric H Davidson; Michael S Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-22       Impact factor: 11.205

6.  Tril targets Smad7 for degradation to allow hematopoietic specification in Xenopus embryos.

Authors:  Yangsook Song Green; Sunjong Kwon; Mizuho S Mimoto; Yuanyuan Xie; Jan L Christian
Journal:  Development       Date:  2016-09-15       Impact factor: 6.868

7.  Quantitative imaging of the Dorsal nuclear gradient reveals limitations to threshold-dependent patterning in Drosophila.

Authors:  Louisa M Liberman; Gregory T Reeves; Angelike Stathopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-16       Impact factor: 11.205

8.  Capicua DNA-binding sites are general response elements for RTK signaling in Drosophila.

Authors:  Leiore Ajuria; Claudia Nieva; Clint Winkler; Dennis Kuo; Núria Samper; María José Andreu; Aharon Helman; Sergio González-Crespo; Ze'ev Paroush; Albert J Courey; Gerardo Jiménez
Journal:  Development       Date:  2011-01-26       Impact factor: 6.868

Review 9.  The evolution of dorsal-ventral patterning mechanisms in insects.

Authors:  Jeremy A Lynch; Siegfried Roth
Journal:  Genes Dev       Date:  2011-01-15       Impact factor: 11.361

10.  Variation in the dorsal gradient distribution is a source for modified scaling of germ layers in Drosophila.

Authors:  Juan Sebastian Chahda; Rui Sousa-Neves; Claudia Mieko Mizutani
Journal:  Curr Biol       Date:  2013-04-11       Impact factor: 10.834

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