Literature DB >> 27230753

Stepwise Progression of Embryonic Patterning.

Jeremy E Sandler1, Angelike Stathopoulos2.   

Abstract

It is long established that the graded distribution of Dorsal transcription factor influences spatial domains of gene expression along the dorsoventral (DV) axis of Drosophila melanogaster embryos. However, the more recent realization that Dorsal levels also change with time raises the question of whether these dynamics are instructive. An overview of DV axis patterning is provided, focusing on new insights identified through quantitative analysis of temporal changes in Dorsal target gene expression from one nuclear cycle to the next ('steps'). Possible roles for the stepwise progression of this patterning program are discussed including (i) tight temporal regulation of signaling pathway activation, (ii) control of gene expression cohorts, and (iii) ensuring the irreversibility of the patterning and cell fate specification process.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Dorsal transcription factor; Drosophila embryo; dorsal–ventral patterning; dynamics; morphogen gradients; spatiotemporal gene expression

Mesh:

Substances:

Year:  2016        PMID: 27230753      PMCID: PMC5065017          DOI: 10.1016/j.tig.2016.04.004

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  95 in total

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Journal:  Nat Biotechnol       Date:  2008-02-17       Impact factor: 54.908

2.  Cells within a cell: Insights into cellular architecture and polarization from the organization of the early fly embryo.

Authors:  Manos Mavrakis; Richa Rikhy; Jennifer Lippincott-Schwartz
Journal:  Commun Integr Biol       Date:  2009-07

3.  Establishment of dorsal-ventral polarity in the Drosophila embryo: the induction of polarity by the Toll gene product.

Authors:  K V Anderson; L Bokla; C Nüsslein-Volhard
Journal:  Cell       Date:  1985-10       Impact factor: 41.582

4.  Binding affinities and cooperative interactions with bHLH activators delimit threshold responses to the dorsal gradient morphogen.

Authors:  J Jiang; M Levine
Journal:  Cell       Date:  1993-03-12       Impact factor: 41.582

Review 5.  A conserved signaling pathway: the Drosophila toll-dorsal pathway.

Authors:  M P Belvin; K V Anderson
Journal:  Annu Rev Cell Dev Biol       Date:  1996       Impact factor: 13.827

6.  Biases in Illumina transcriptome sequencing caused by random hexamer priming.

Authors:  Kasper D Hansen; Steven E Brenner; Sandrine Dudoit
Journal:  Nucleic Acids Res       Date:  2010-04-14       Impact factor: 16.971

7.  The developmental transcriptome of Drosophila melanogaster.

Authors:  Brenton R Graveley; Angela N Brooks; Joseph W Carlson; Michael O Duff; Jane M Landolin; Li Yang; Carlo G Artieri; Marijke J van Baren; Nathan Boley; Benjamin W Booth; James B Brown; Lucy Cherbas; Carrie A Davis; Alex Dobin; Renhua Li; Wei Lin; John H Malone; Nicolas R Mattiuzzo; David Miller; David Sturgill; Brian B Tuch; Chris Zaleski; Dayu Zhang; Marco Blanchette; Sandrine Dudoit; Brian Eads; Richard E Green; Ann Hammonds; Lichun Jiang; Phil Kapranov; Laura Langton; Norbert Perrimon; Jeremy E Sandler; Kenneth H Wan; Aarron Willingham; Yu Zhang; Yi Zou; Justen Andrews; Peter J Bickel; Steven E Brenner; Michael R Brent; Peter Cherbas; Thomas R Gingeras; Roger A Hoskins; Thomas C Kaufman; Brian Oliver; Susan E Celniker
Journal:  Nature       Date:  2010-12-22       Impact factor: 49.962

8.  STAT is an essential activator of the zygotic genome in the early Drosophila embryo.

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9.  Evolution acts on enhancer organization to fine-tune gradient threshold readouts.

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10.  Autoregulatory feedback controls sequential action of cis-regulatory modules at the brinker locus.

Authors:  Leslie Dunipace; Abbie Saunders; Hilary L Ashe; Angelike Stathopoulos
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  7 in total

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Authors:  Jeremy E Sandler; Jihyun Irizarry; Vincent Stepanik; Leslie Dunipace; Henry Amrhein; Angelike Stathopoulos
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2.  Temporal control of gene expression by the pioneer factor Zelda through transient interactions in hubs.

Authors:  Jeremy Dufourt; Antonio Trullo; Jennifer Hunter; Carola Fernandez; Jorge Lazaro; Matthieu Dejean; Lucas Morales; Saida Nait-Amer; Katharine N Schulz; Melissa M Harrison; Cyril Favard; Ovidiu Radulescu; Mounia Lagha
Journal:  Nat Commun       Date:  2018-12-05       Impact factor: 14.919

3.  A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs.

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Journal:  Development       Date:  2019-03-28       Impact factor: 6.868

4.  Distinct Roles of Broadly Expressed Repressors Support Dynamic Enhancer Action and Change in Time.

Authors:  Theodora Koromila; Angelike Stathopoulos
Journal:  Cell Rep       Date:  2019-07-23       Impact factor: 9.423

5.  Accessible chromatin reveals regulatory mechanisms underlying cell fate decisions during early embryogenesis.

Authors:  Tongqiang Fan; Youjun Huang
Journal:  Sci Rep       Date:  2021-04-12       Impact factor: 4.379

6.  Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning.

Authors:  Elizabeth Ing-Simmons; Roshan Vaid; Xin Yang Bing; Michael Levine; Mattias Mannervik; Juan M Vaquerizas
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7.  Twist-dependent ratchet functioning downstream from Dorsal revealed using a light-inducible degron.

Authors:  Jihyun Irizarry; James McGehee; Goheun Kim; David Stein; Angelike Stathopoulos
Journal:  Genes Dev       Date:  2020-05-28       Impact factor: 11.361

  7 in total

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