Literature DB >> 23723943

3,3'-({4-[(4,5-Di-cyano-1H-imidazol-2-yl)diazen-yl]phen-yl}imino)-dipropionic acid.

Roberto Centore1, Vincenzo Piccialli, Angela Tuzi.   

Abstract

The title compound, C17H15N7O4, is a push-pull non-linear optical chromophore containing a di-alkyl-amino donor group and the di-cyano-imidazolyl acceptor separated by a π-conjugated path. The benzene and imidazole rings are not coplanar, making a dihedral angle of 10.0 (2)°. In the crystal, mol-ecules are linked by an extended set of hydrogen bonds and several motifs are recognized. Pairs of mol-ecules are held together by hydrogen bonding between carb-oxy O-H donor groups and diazenyl N-atom acceptors, forming R 2 (2)(24) ring patterns across inversion centres. Four-mol-ecule R 4 (4)(28) ring motifs are formed, again across inversion centres, through hydrogen bonding involving carb-oxy O-H donor groups and diazenyl and imidazole N-atom acceptors. Four-mol-ecule R 4 (4)(42) patterns are formed among mol-ecules related by translation and involve carb-oxy O-H and imidazole N-H donor groups with carbonyl O-atom and imidazole N-atom acceptors.

Entities:  

Year:  2013        PMID: 23723943      PMCID: PMC3648323          DOI: 10.1107/S1600536813011185

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a general survey of advanced materials based on heterocycles, see: Dalton (2002 ▶); Heeger (2010 ▶). For semiconductor, optoelectronic and piezoelectric materials containing heterocycles, see: Centore, Ricciotti et al. (2012 ▶); Centore, Concilio et al. (2012 ▶). For structural analysis of conjugation in heterocycle-based organic mol­ecules, see: Carella, Centore, Fort et al. (2004 ▶); Gainsford et al. (2008 ▶). For structural and theoretical analysis of conjugation in metallorganic compounds containing heterocycles, see: Takjoo et al. (2011 ▶); Takjoo & Centore (2013 ▶). For theoretical computations on π-conjugated compounds, see: Capobianco et al. (2012 ▶, 2013 ▶). For the synthesis of related heterocyclic compounds, see: Carella, Centore, Sirigu et al. (2004 ▶); Piccialli et al. (2013 ▶); Centore, Fusco, Capobianco et al. (2013 ▶). For the local packing modes of non-linear optical chromophores see: Thallapally et al. (2002 ▶); Centore & Piccialli (2012 ▶); Centore, Piccialli & Tuzi (2013 ▶). For hydrogen bonding in crystal structures, see: Allen et al. (1999 ▶); Steiner (2002 ▶); Centore, Jazbinsek et al. (2012 ▶); Centore, Fusco, Jazbinsek et al. (2013 ▶). For the synthesis of similar diazo-chromophores, see: Centore et al. (2007 ▶).

Experimental

Crystal data

C17H15N7O4 M = 381.36 Triclinic, a = 6.895 (5) Å b = 10.443 (3) Å c = 13.373 (3) Å α = 105.40 (2)° β = 103.96 (4)° γ = 104.84 (4)° V = 846.5 (7) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.26 × 0.13 × 0.07 mm

Data collection

Enraf–Nonius MACH3 diffractometer 4256 measured reflections 4082 independent reflections 1220 reflections with I > 2σ(I) R int = 0.074 1 standard reflections every 120 min intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.075 wR(F 2) = 0.216 S = 0.91 4082 reflections 262 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.33 e Å−3 Data collection: MACH3/PC Software (Nonius, 1996 ▶); cell refinement: CELLFITW (Centore, 2004 ▶); data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813011185/bx2439sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813011185/bx2439Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813011185/bx2439Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H15N7O4Z = 2
Mr = 381.36F(000) = 396
Triclinic, P1Dx = 1.496 Mg m3
a = 6.895 (5) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.443 (3) ÅCell parameters from 25 reflections
c = 13.373 (3) Åθ = 7.2–9.8°
α = 105.40 (2)°µ = 0.11 mm1
β = 103.96 (4)°T = 293 K
γ = 104.84 (4)°Plate, red
V = 846.5 (7) Å30.26 × 0.13 × 0.07 mm
Enraf–Nonius MACH3 diffractometerRint = 0.074
Radiation source: fine-focus sealed tubeθmax = 28.0°, θmin = 1.7°
Graphite monochromatorh = −9→8
Nonprofiled ω scansk = −13→13
4256 measured reflectionsl = 0→17
4082 independent reflections1 standard reflections every 120 min
1220 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.075Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.216H atoms treated by a mixture of independent and constrained refinement
S = 0.91w = 1/[σ2(Fo2) + (0.072P)2] where P = (Fo2 + 2Fc2)/3
4082 reflections(Δ/σ)max < 0.001
262 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.Several crystal specimens were tested but their quality was, in general, rather poor, as witnessed by the relatively high fraction of low intensity reflections. The poorly diffracting nature of the crystals is the reason for the relatively high R factors.
xyzUiso*/Ueq
O10.5087 (7)0.2972 (5)0.6271 (4)0.0695 (14)
O20.7415 (7)0.2144 (5)0.5641 (3)0.0546 (13)
H20.828 (10)0.252 (7)0.625 (5)0.065*
O3−0.6820 (6)−0.1393 (4)0.2211 (3)0.0449 (11)
H3−0.791 (9)−0.207 (6)0.168 (4)0.054*
O4−0.4973 (6)−0.2424 (4)0.1314 (3)0.0579 (13)
N10.0479 (6)0.1074 (4)0.3096 (3)0.0347 (11)
N20.1576 (6)0.3969 (4)0.0245 (3)0.0330 (11)
N30.0616 (7)0.3422 (4)−0.0794 (4)0.0351 (11)
N40.2872 (7)0.5635 (5)−0.0763 (4)0.0321 (12)
H40.327 (8)0.603 (6)−0.010 (4)0.039*
N50.0928 (6)0.3985 (4)−0.2380 (3)0.0350 (11)
N60.2377 (9)0.5392 (6)−0.4342 (5)0.0736 (18)
N70.5606 (7)0.8734 (5)−0.1101 (4)0.0530 (15)
C10.5542 (10)0.2307 (6)0.5524 (5)0.0443 (16)
C20.4013 (8)0.1581 (6)0.4388 (4)0.0410 (15)
H2A0.38510.05860.41650.049*
H2B0.46040.19650.38980.049*
C30.1838 (8)0.1715 (6)0.4252 (4)0.0390 (14)
H3A0.11750.12540.46850.047*
H3B0.19900.27070.45220.047*
C4−0.5053 (8)−0.1506 (6)0.2034 (4)0.0360 (14)
C5−0.3145 (8)−0.0271 (6)0.2831 (4)0.0443 (15)
H5A−0.3144−0.01900.35700.053*
H5B−0.32940.05820.27140.053*
C6−0.1030 (8)−0.0340 (6)0.2757 (4)0.0379 (14)
H6A−0.0501−0.08280.32260.045*
H6B−0.1197−0.08670.20070.045*
C70.0604 (7)0.1772 (6)0.2383 (4)0.0327 (13)
C8−0.0607 (8)0.1135 (5)0.1257 (4)0.0327 (13)
H8−0.16070.02320.10050.039*
C9−0.0354 (7)0.1804 (5)0.0534 (4)0.0318 (13)
H9−0.11380.1331−0.02080.038*
C100.1061 (7)0.3192 (5)0.0874 (4)0.0319 (13)
C110.2172 (8)0.3865 (5)0.2009 (4)0.0354 (14)
H110.30790.47970.22620.042*
C120.1978 (8)0.3213 (5)0.2750 (4)0.0350 (13)
H120.27320.37000.34940.042*
C130.1445 (7)0.4320 (5)−0.1300 (4)0.0303 (13)
C140.3292 (8)0.6199 (5)−0.1517 (4)0.0342 (14)
C150.2101 (8)0.5140 (6)−0.2531 (4)0.0371 (14)
C160.4603 (8)0.7600 (6)−0.1284 (4)0.0382 (14)
C170.2170 (9)0.5250 (6)−0.3564 (5)0.0457 (16)
U11U22U33U12U13U23
O10.074 (3)0.066 (3)0.041 (3)0.025 (3)−0.002 (2)−0.005 (2)
O20.041 (3)0.058 (3)0.042 (3)0.008 (2)−0.007 (2)0.010 (2)
O30.031 (2)0.048 (3)0.039 (2)−0.0005 (19)0.0067 (19)0.007 (2)
O40.051 (3)0.051 (3)0.040 (2)0.001 (2)0.010 (2)−0.013 (2)
N10.031 (2)0.030 (3)0.029 (3)−0.002 (2)0.001 (2)0.008 (2)
N20.030 (2)0.030 (3)0.030 (3)0.005 (2)0.007 (2)0.005 (2)
N30.037 (3)0.030 (3)0.034 (3)0.007 (2)0.012 (2)0.009 (2)
N40.029 (2)0.025 (3)0.030 (2)0.001 (2)0.006 (2)0.003 (2)
N50.027 (2)0.030 (3)0.035 (3)0.003 (2)−0.001 (2)0.010 (2)
N60.074 (4)0.083 (5)0.053 (4)0.009 (3)0.015 (3)0.029 (3)
N70.044 (3)0.040 (3)0.067 (4)0.005 (3)0.020 (3)0.015 (3)
C10.052 (4)0.030 (4)0.037 (4)0.005 (3)0.002 (3)0.010 (3)
C20.041 (3)0.040 (4)0.033 (3)0.007 (3)0.003 (3)0.012 (3)
C30.033 (3)0.041 (4)0.033 (3)0.001 (3)0.007 (3)0.011 (3)
C40.034 (3)0.038 (4)0.031 (3)0.004 (3)0.007 (3)0.015 (3)
C50.039 (3)0.040 (4)0.039 (3)0.000 (3)0.011 (3)0.005 (3)
C60.034 (3)0.035 (3)0.034 (3)0.002 (3)0.005 (3)0.010 (3)
C70.021 (3)0.029 (3)0.035 (3)0.005 (2)0.005 (2)0.000 (3)
C80.027 (3)0.026 (3)0.036 (3)0.002 (2)0.006 (2)0.007 (3)
C90.029 (3)0.024 (3)0.030 (3)−0.002 (2)0.002 (2)0.007 (2)
C100.022 (3)0.032 (3)0.032 (3)0.009 (2)0.002 (2)0.002 (3)
C110.033 (3)0.025 (3)0.040 (3)0.002 (2)0.012 (3)0.006 (3)
C120.035 (3)0.033 (3)0.024 (3)0.006 (3)0.005 (2)0.000 (2)
C130.024 (3)0.033 (3)0.028 (3)0.008 (2)0.006 (2)0.006 (2)
C140.029 (3)0.031 (3)0.036 (3)0.005 (3)0.008 (2)0.008 (3)
C150.028 (3)0.042 (4)0.031 (3)0.007 (3)0.003 (2)0.008 (3)
C160.031 (3)0.038 (4)0.045 (4)0.011 (3)0.013 (3)0.014 (3)
C170.040 (3)0.049 (4)0.037 (4)0.004 (3)0.006 (3)0.014 (3)
O1—C11.213 (7)C2—H2B0.9700
O2—C11.323 (7)C3—H3A0.9700
O2—H20.80 (6)C3—H3B0.9700
O3—C41.324 (7)C4—C51.502 (7)
O3—H30.88 (5)C5—C61.504 (7)
O4—C41.187 (6)C5—H5A0.9700
N1—C71.350 (7)C5—H5B0.9700
N1—C61.449 (6)C6—H6A0.9700
N1—C31.465 (6)C6—H6B0.9700
N2—N31.278 (5)C7—C81.408 (7)
N2—C101.361 (6)C7—C121.434 (7)
N3—C131.384 (6)C8—C91.353 (7)
N4—C131.346 (6)C8—H80.9300
N4—C141.347 (7)C9—C101.404 (7)
N4—H40.81 (5)C9—H90.9300
N5—C131.325 (6)C10—C111.408 (7)
N5—C151.363 (6)C11—C121.356 (7)
N6—C171.127 (7)C11—H110.9300
N7—C161.133 (6)C12—H120.9300
C1—C21.483 (7)C14—C151.392 (7)
C2—C31.514 (7)C14—C161.415 (8)
C2—H2A0.9700C15—C171.427 (8)
C1—O2—H2116 (5)N1—C6—C5110.1 (4)
C4—O3—H3108 (4)N1—C6—H6A109.6
C7—N1—C6121.5 (4)C5—C6—H6A109.6
C7—N1—C3121.7 (4)N1—C6—H6B109.6
C6—N1—C3116.7 (4)C5—C6—H6B109.6
N3—N2—C10118.0 (4)H6A—C6—H6B108.2
N2—N3—C13109.7 (4)N1—C7—C8122.1 (5)
C13—N4—C14108.1 (4)N1—C7—C12120.9 (5)
C13—N4—H4124 (4)C8—C7—C12117.0 (5)
C14—N4—H4127 (4)C9—C8—C7121.7 (5)
C13—N5—C15105.1 (4)C9—C8—H8119.1
O1—C1—O2123.8 (6)C7—C8—H8119.1
O1—C1—C2122.5 (6)C8—C9—C10121.7 (5)
O2—C1—C2113.7 (6)C8—C9—H9119.1
C1—C2—C3114.2 (5)C10—C9—H9119.1
C1—C2—H2A108.7N2—C10—C9128.5 (5)
C3—C2—H2A108.7N2—C10—C11114.8 (4)
C1—C2—H2B108.7C9—C10—C11116.6 (5)
C3—C2—H2B108.7C12—C11—C10122.9 (5)
H2A—C2—H2B107.6C12—C11—H11118.6
N1—C3—C2111.0 (4)C10—C11—H11118.6
N1—C3—H3A109.4C11—C12—C7119.8 (5)
C2—C3—H3A109.4C11—C12—H12120.1
N1—C3—H3B109.4C7—C12—H12120.1
C2—C3—H3B109.4N5—C13—N4111.6 (5)
H3A—C3—H3B108.0N5—C13—N3123.9 (4)
O4—C4—O3125.1 (5)N4—C13—N3124.5 (4)
O4—C4—C5123.8 (5)N4—C14—C15105.3 (5)
O3—C4—C5111.0 (5)N4—C14—C16125.5 (5)
C4—C5—C6115.5 (5)C15—C14—C16129.1 (5)
C4—C5—H5A108.4N5—C15—C14109.8 (5)
C6—C5—H5A108.4N5—C15—C17125.8 (5)
C4—C5—H5B108.4C14—C15—C17124.4 (5)
C6—C5—H5B108.4N7—C16—C14178.1 (6)
H5A—C5—H5B107.5N6—C17—C15175.0 (6)
C10—N2—N3—C13−175.9 (4)C9—C10—C11—C122.4 (8)
O1—C1—C2—C3−1.3 (8)C10—C11—C12—C70.5 (8)
O2—C1—C2—C3177.9 (5)N1—C7—C12—C11176.1 (5)
C7—N1—C3—C2−81.8 (6)C8—C7—C12—C11−4.6 (7)
C6—N1—C3—C299.1 (5)C15—N5—C13—N40.6 (6)
C1—C2—C3—N1175.3 (5)C15—N5—C13—N3−179.4 (5)
O4—C4—C5—C6−7.2 (8)C14—N4—C13—N50.9 (6)
O3—C4—C5—C6175.8 (5)C14—N4—C13—N3−179.2 (5)
C7—N1—C6—C5−85.4 (6)N2—N3—C13—N5172.9 (5)
C3—N1—C6—C593.7 (6)N2—N3—C13—N4−7.0 (7)
C4—C5—C6—N1150.8 (5)C13—N4—C14—C15−2.0 (6)
C6—N1—C7—C8−4.7 (8)C13—N4—C14—C16175.5 (5)
C3—N1—C7—C8176.2 (5)C13—N5—C15—C14−1.8 (6)
C6—N1—C7—C12174.7 (5)C13—N5—C15—C17176.3 (6)
C3—N1—C7—C12−4.4 (7)N4—C14—C15—N52.4 (6)
N1—C7—C8—C9−174.8 (5)C16—C14—C15—N5−175.0 (5)
C12—C7—C8—C95.8 (8)N4—C14—C15—C17−175.8 (5)
C7—C8—C9—C10−2.9 (8)C16—C14—C15—C176.9 (10)
N3—N2—C10—C93.2 (8)N4—C14—C16—N7−92 (19)
N3—N2—C10—C11−179.6 (5)C15—C14—C16—N785 (19)
C8—C9—C10—N2175.9 (5)N5—C15—C17—N6−143 (8)
C8—C9—C10—C11−1.3 (7)C14—C15—C17—N635 (9)
N2—C10—C11—C12−175.1 (5)
D—H···AD—HH···AD···AD—H···A
O2—H2···N5i0.80 (6)2.12 (6)2.896 (6)162 (6)
O3—H3···N3ii0.88 (5)1.89 (6)2.750 (6)165 (5)
N4—H4···O4iii0.81 (5)1.98 (5)2.740 (6)156 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯N5i 0.80 (6)2.12 (6)2.896 (6)162 (6)
O3—H3⋯N3ii 0.88 (5)1.89 (6)2.750 (6)165 (5)
N4—H4⋯O4iii 0.81 (5)1.98 (5)2.740 (6)156 (5)

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Maria Elena Cucciolito; Barbara Panunzi; Francesco Ruffo; Angela Tuzi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-22

8.  {4-Bromo-2-[(2-{(ethyl-sulfan-yl)[(2-oxido-benzyl-idene-κO)amino-κN]methyl-idene}hydrazinyl-idene-κN (1))meth-yl]phenolato-κO}(ethanol-κO)dioxido-uranium(VI).

Authors:  Roberto Centore; Mehdi Ahmadi; Andrea Peluso
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-08
  8 in total

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