Literature DB >> 24046700

N,N'-Di-hydroxy-benzene-1,2:4,5-tetra-carboximide dihydrate.

Roberto Centore1, Antonio Carella.   

Abstract

In the title compound, C10H4N2O6·2H2O, the organic mol-ecule has crystallographically imposed inversion symmetry. The atoms of the three fused rings of the mol-ecule are coplanar within 0.0246 (8) Å, while the two hy-droxy O atoms are displaced from the mean plane of the mol-ecule by 0.127 (1) Å. In the crystal, infinite near-planar layers of close-packed mol-ecules are formed by hydrogen bonding between water O-H donor groups and carbonyl O-atom acceptors, and by weak inter-actions between C-H donor groups and water O-atom acceptors. The layers are parallel to the {102} family of planes. The stacked planes are held together by hydrogen bonding between N-OH donor groups and water O-atom acceptors.

Entities:  

Year:  2013        PMID: 24046700      PMCID: PMC3770415          DOI: 10.1107/S1600536813016991

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For semiconductor, optoelectronic and piezoelectric materials containing heterocycles, see: Centore, Ricciotti et al. (2012 ▶); Centore, Concilio et al. (2012 ▶). For the structural analysis of conjugation in organic mol­ecules containing heterocycles, see: Carella et al. (2004 ▶). For the crystal packing of heterocycles containing nitro­gen, see: Centore et al. (2013a ▶,b ▶). For the crystal engineering of structures containing stacked infinite planar layers, see: Centore, Causà et al. (2013 ▶). For the principle of close packing in organic crystallography, see: Kitaigorodskii (1961 ▶).

Experimental

Crystal data

C10H4N2O6·2H2O M = 284.18 Monoclinic, a = 6.874 (3) Å b = 10.189 (5) Å c = 8.099 (4) Å β = 106.58 (2)° V = 543.7 (4) Å3 Z = 2 Mo Kα radiation μ = 0.15 mm−1 T = 293 K 0.40 × 0.40 × 0.30 mm

Data collection

Bruker–Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.941, T max = 0.955 4484 measured reflections 1231 independent reflections 1100 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.100 S = 1.09 1231 reflections 100 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.25 e Å−3 Data collection: COLLECT (Nonius, 1999 ▶); cell refinement: DIRAX/LSQ (Duisenberg et al., 2000 ▶); data reduction: EVALCCD (Duisenberg et al., 2003 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813016991/rz5073sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016991/rz5073Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813016991/rz5073Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H4N2O6·2H2OF(000) = 292
Mr = 284.18Dx = 1.736 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 150 reflections
a = 6.874 (3) Åθ = 4.9–23.6°
b = 10.189 (5) ŵ = 0.15 mm1
c = 8.099 (4) ÅT = 293 K
β = 106.58 (2)°Prism, yellow
V = 543.7 (4) Å30.40 × 0.40 × 0.30 mm
Z = 2
Bruker–Nonius KappaCCD diffractometer1231 independent reflections
Radiation source: normal-focus sealed tube1100 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 3.1°
CCD rotation images, thick slices scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2001)k = −11→13
Tmin = 0.941, Tmax = 0.955l = −10→9
4484 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0519P)2 + 0.137P] where P = (Fo2 + 2Fc2)/3
1231 reflections(Δ/σ)max < 0.001
100 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.10245 (17)0.10697 (12)−0.05619 (15)0.0244 (3)
H10.16880.1760−0.09240.029*
C2−0.05331 (17)0.12613 (11)0.01756 (15)0.0230 (3)
C3−0.15149 (15)0.02254 (11)0.07171 (14)0.0230 (3)
C4−0.31036 (17)0.07755 (12)0.14333 (15)0.0254 (3)
C5−0.14618 (17)0.25083 (12)0.05285 (15)0.0258 (3)
N1−0.29927 (15)0.21147 (11)0.12231 (14)0.0287 (3)
O1−0.42607 (13)0.02174 (10)0.20623 (12)0.0346 (3)
O2−0.10464 (15)0.36247 (8)0.02877 (13)0.0360 (3)
O3−0.40708 (15)0.29756 (10)0.19205 (13)0.0367 (3)
H3−0.499 (3)0.3314 (17)0.103 (2)0.044*
O40.32117 (15)0.38853 (10)−0.08642 (14)0.0367 (3)
H4A0.249 (2)0.4570 (19)−0.067 (2)0.044*
H4B0.387 (3)0.4151 (18)−0.163 (2)0.044*
U11U22U33U12U13U23
C10.0234 (5)0.0230 (6)0.0280 (6)−0.0016 (4)0.0092 (4)0.0017 (5)
C20.0226 (5)0.0207 (5)0.0255 (5)0.0009 (4)0.0063 (4)0.0001 (4)
C30.0198 (5)0.0255 (6)0.0246 (5)0.0000 (4)0.0077 (4)−0.0006 (4)
C40.0231 (5)0.0285 (6)0.0248 (5)0.0012 (4)0.0074 (4)−0.0019 (4)
C50.0268 (6)0.0245 (6)0.0258 (5)0.0030 (4)0.0072 (4)−0.0003 (5)
N10.0303 (5)0.0264 (6)0.0335 (5)0.0068 (4)0.0156 (4)−0.0007 (4)
O10.0314 (5)0.0382 (6)0.0405 (5)−0.0032 (4)0.0202 (4)−0.0014 (4)
O20.0436 (6)0.0221 (5)0.0451 (6)0.0019 (4)0.0170 (5)0.0012 (4)
O30.0383 (5)0.0379 (6)0.0369 (5)0.0155 (4)0.0157 (4)−0.0047 (4)
O40.0379 (5)0.0324 (5)0.0436 (6)0.0011 (4)0.0178 (4)0.0028 (4)
C1—C3i1.3766 (17)C4—N11.3799 (18)
C1—C21.3806 (17)C5—O21.2022 (16)
C1—H10.9300C5—N11.3866 (16)
C2—C31.3895 (16)N1—O31.3699 (13)
C2—C51.4858 (16)O3—H30.886 (19)
C3—C1i1.3766 (17)O4—H4A0.896 (19)
C3—C41.4848 (16)O4—H4B0.909 (19)
C4—O11.2028 (15)
C3i—C1—C2114.54 (11)O1—C4—C3129.49 (12)
C3i—C1—H1122.7N1—C4—C3104.62 (10)
C2—C1—H1122.7O2—C5—N1125.62 (11)
C1—C2—C3122.39 (11)O2—C5—C2130.01 (11)
C1—C2—C5129.26 (11)N1—C5—C2104.37 (10)
C3—C2—C5108.35 (11)O3—N1—C4121.80 (10)
C1i—C3—C2123.07 (11)O3—N1—C5123.00 (11)
C1i—C3—C4128.62 (11)C4—N1—C5114.27 (10)
C2—C3—C4108.31 (11)N1—O3—H3105.0 (11)
O1—C4—N1125.88 (11)H4A—O4—H4B107.4 (16)
C3i—C1—C2—C30.13 (18)C3—C2—C5—O2178.61 (12)
C3i—C1—C2—C5−179.51 (11)C1—C2—C5—N1178.07 (11)
C1—C2—C3—C1i−0.1 (2)C3—C2—C5—N1−1.61 (13)
C5—C2—C3—C1i179.57 (10)O1—C4—N1—O38.09 (19)
C1—C2—C3—C4−179.69 (10)C3—C4—N1—O3−172.06 (10)
C5—C2—C3—C40.02 (12)O1—C4—N1—C5177.34 (11)
C1i—C3—C4—O11.9 (2)C3—C4—N1—C5−2.80 (13)
C2—C3—C4—O1−178.56 (12)O2—C5—N1—O3−8.29 (19)
C1i—C3—C4—N1−177.92 (11)C2—C5—N1—O3171.92 (10)
C2—C3—C4—N11.59 (12)O2—C5—N1—C4−177.40 (12)
C1—C2—C5—O2−1.7 (2)C2—C5—N1—C42.81 (13)
D—H···AD—HH···AD···AD—H···A
O3—H3···O4ii0.886 (19)1.768 (19)2.6516 (18)175.2 (17)
O4—H4A···O2iii0.896 (19)2.15 (2)3.0441 (17)172.4 (16)
O4—H4B···O1iv0.909 (19)1.990 (19)2.8879 (16)169.3 (15)
C1—H1···O40.932.403.280 (2)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯O4i 0.886 (19)1.768 (19)2.6516 (18)175.2 (17)
O4—H4A⋯O2ii 0.896 (19)2.15 (2)3.0441 (17)172.4 (16)
O4—H4B⋯O1iii 0.909 (19)1.990 (19)2.8879 (16)169.3 (15)
C1—H1⋯O40.932.403.280 (2)158

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(4-Methyl-phen-yl)-6-nitro-1,3-benzoxazole.

Authors:  Roberto Centore; Vincenzo Piccialli; Angela Tuzi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-05

3.  3,3'-({4-[(4,5-Di-cyano-1H-imidazol-2-yl)diazen-yl]phen-yl}imino)-dipropionic acid.

Authors:  Roberto Centore; Vincenzo Piccialli; Angela Tuzi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-27
  3 in total
  1 in total

1.  Crystal structure of N,N'-bis-(2,4-di-fluoro-benzo-yloxy)benzene-1,2:4,5-tetra-carboximide.

Authors:  Sandra Fusco; Angela Tuzi; Roberto Centore; Antonio Carella
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-01-26
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.