Literature DB >> 24098215

Dipentyl 2,6-di-amino-benzo[1,2-b:4,5-b']di-furan-3,7-di-carboxyl-ate.

Giuseppina Roviello1, Fabio Borbone, Antonio Carella, Giovanni N Roviello, Angela Tuzi.   

Abstract

The title compound, C22H28N2O6, crystallizes with one half-mol-ecule in the independent unit, the mol-ecule being located on an inversion centre. The penthyl groups are in the all-trans conformation and an almost planar conformation of the whole mol-ecule is observed [maximum deviation from the least-squares plane through all non-H atoms is 0.0229 (17) Å for an N atom]. The amino groups are involved in intra- and inter-molecular hydrogen bonds. Intra-molecular hydrogen bonding involving the amino group and ester carbonyl helps to lock the syn conformation of the ester with respect to the amino group. In the crystal, N-H⋯O hydrogen bonding involving the amino group and the furan and ester carbonyl O atoms self-assembles the mol-ecules into a two-dimensional hydrogen-bonded network parallel to (010) that displays inter-digital packing sustained by alk-yl-alkyl inter-actions.

Entities:  

Year:  2013        PMID: 24098215      PMCID: PMC3790396          DOI: 10.1107/S160053681302480X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and properties of amino­benzodi­furane derivatives, see: Caruso et al. (2009 ▶). For O- and N-rich aromatic heterocycles, see: Roviello et al. (2007 ▶, 2012 ▶). For mol­ecules with optical and opto-electronical properties, see: Carella et al. (2012 ▶); Centore et al. (2007 ▶); Roviello et al. (2009 ▶); Ricciotti et al. (2013 ▶); Vitaliano et al. (2009 ▶). For hydrogen bonding in heterocycles, see: Centore et al. (2013a ▶,b ▶).

Experimental

Crystal data

C22H28N2O6 M = 416.46 Monoclinic, a = 8.267 (1) Å b = 7.994 (1) Å c = 17.582 (3) Å β = 98.98 (2)° V = 1147.7 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 173 K 0.50 × 0.04 × 0.01 mm

Data collection

Bruker–Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.957, T max = 0.999 11093 measured reflections 2626 independent reflections 1258 reflections with I > 2σ(I) R int = 0.096

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.134 S = 0.93 2626 reflections 142 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.20 e Å−3 Data collection: COLLECT (Nonius, 1999 ▶); cell refinement: DIRAX/LSQ (Duisenberg et al., 2000 ▶); data reduction: EVALCCD (Duisenberg et al., 2003 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681302480X/ds2234sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681302480X/ds2234Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H28N2O6F(000) = 444
Mr = 416.46Dx = 1.205 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 75 reflections
a = 8.267 (1) Åθ = 3.1–16.9°
b = 7.994 (1) ŵ = 0.09 mm1
c = 17.582 (3) ÅT = 173 K
β = 98.98 (2)°Block, grey
V = 1147.7 (3) Å30.50 × 0.04 × 0.01 mm
Z = 2
Bruker–Nonius KappaCCD diffractometer2626 independent reflections
Radiation source: normal-focus sealed tube1258 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.096
Detector resolution: 9 pixels mm-1θmax = 27.5°, θmin = 3.2°
CCD rotation images, thick slices scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2001)k = −10→9
Tmin = 0.957, Tmax = 0.999l = −22→22
11093 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.134H atoms treated by a mixture of independent and constrained refinement
S = 0.93w = 1/[σ2(Fo2) + (0.061P)2] where P = (Fo2 + 2Fc2)/3
2626 reflections(Δ/σ)max < 0.001
142 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5923 (2)0.1341 (3)0.04464 (11)0.0257 (5)
H10.65560.23140.07310.026*
C20.5354 (2)−0.0094 (3)0.07682 (11)0.0246 (5)
C30.4461 (2)−0.1426 (3)0.03695 (11)0.0255 (5)
C40.4171 (2)−0.2648 (3)0.09645 (11)0.0254 (5)
C50.4884 (3)−0.1957 (3)0.16650 (12)0.0282 (5)
C60.3356 (2)−0.4269 (3)0.09113 (12)0.0288 (6)
C70.1878 (3)−0.6355 (3)0.00858 (11)0.0326 (6)
H7A0.0935−0.63560.03700.033*
H7B0.2644−0.72500.03010.033*
C80.1290 (3)−0.6679 (3)−0.07634 (12)0.0340 (6)
H8A0.2242−0.6700−0.10430.034*
H8B0.0556−0.5760−0.09790.034*
C90.0363 (3)−0.8366 (3)−0.08811 (12)0.0382 (6)
H9A0.1101−0.9271−0.06540.038*
H9B−0.0583−0.8331−0.05980.038*
C10−0.0261 (3)−0.8793 (3)−0.17302 (13)0.0472 (7)
H10A0.0678−0.8822−0.20170.047*
H10B−0.1019−0.7904−0.19580.047*
C11−0.1155 (4)−1.0494 (3)−0.18205 (16)0.0632 (8)
H11A−0.1539−1.0711−0.23670.063*
H11B−0.2094−1.0467−0.15420.063*
H11C−0.0400−1.1383−0.16090.063*
N10.4973 (3)−0.2479 (3)0.23935 (11)0.0383 (6)
H1A0.550 (3)−0.192 (3)0.2748 (12)0.038*
H1B0.454 (3)−0.340 (3)0.2485 (12)0.038*
O10.56177 (16)−0.04310 (18)0.15705 (7)0.0292 (4)
O20.32315 (19)−0.51874 (18)0.14725 (8)0.0377 (4)
O30.27143 (17)−0.47150 (17)0.01739 (8)0.0324 (4)
U11U22U33U12U13U23
C10.0243 (13)0.0246 (14)0.0275 (12)0.0019 (10)0.0017 (10)−0.0028 (10)
C20.0267 (12)0.0283 (14)0.0184 (11)0.0051 (11)0.0018 (9)0.0001 (10)
C30.0225 (12)0.0268 (14)0.0271 (12)0.0040 (10)0.0039 (10)−0.0032 (10)
C40.0263 (12)0.0216 (13)0.0271 (12)0.0021 (10)0.0009 (10)−0.0009 (10)
C50.0289 (13)0.0252 (15)0.0303 (13)0.0008 (11)0.0039 (10)0.0012 (11)
C60.0260 (13)0.0305 (15)0.0286 (13)0.0076 (11)−0.0001 (10)−0.0006 (11)
C70.0304 (13)0.0269 (14)0.0400 (14)−0.0019 (11)0.0041 (11)−0.0014 (11)
C80.0282 (13)0.0345 (16)0.0385 (13)0.0024 (11)0.0029 (11)−0.0043 (11)
C90.0292 (13)0.0355 (16)0.0487 (15)0.0032 (11)0.0025 (12)−0.0065 (12)
C100.0432 (16)0.0499 (18)0.0483 (15)−0.0056 (14)0.0068 (13)−0.0135 (13)
C110.0620 (19)0.054 (2)0.073 (2)−0.0181 (16)0.0085 (16)−0.0242 (15)
N10.0530 (14)0.0320 (14)0.0268 (12)−0.0109 (11)−0.0033 (10)0.0022 (10)
O10.0350 (9)0.0296 (10)0.0224 (8)−0.0013 (7)0.0025 (7)0.0006 (7)
O20.0489 (10)0.0313 (10)0.0307 (9)−0.0033 (8)−0.0003 (7)0.0075 (7)
O30.0373 (9)0.0293 (10)0.0289 (9)−0.0043 (7)0.0001 (7)−0.0010 (7)
C1—C21.393 (3)C7—H7B0.9900
C1—C3i1.422 (3)C8—C91.549 (3)
C1—H11.0231C8—H8A0.9900
C2—C31.418 (3)C8—H8B0.9900
C2—O11.419 (2)C9—C101.540 (3)
C3—C1i1.422 (3)C9—H9A0.9900
C3—C41.477 (3)C9—H9B0.9900
C4—C51.394 (3)C10—C111.543 (3)
C4—C61.457 (3)C10—H10A0.9900
C5—N11.338 (3)C10—H10B0.9900
C5—O11.384 (2)C11—H11A0.9800
C6—O21.247 (2)C11—H11B0.9800
C6—O31.369 (2)C11—H11C0.9800
C7—O31.479 (2)N1—H1A0.83 (2)
C7—C81.518 (3)N1—H1B0.84 (2)
C7—H7A0.9900
C2—C1—C3i114.40 (18)C7—C8—H8B109.5
C2—C1—H1127.3C9—C8—H8B109.5
C3i—C1—H1118.3H8A—C8—H8B108.1
C1—C2—C3126.93 (18)C10—C9—C8114.01 (19)
C1—C2—O1123.44 (18)C10—C9—H9A108.8
C3—C2—O1109.63 (17)C8—C9—H9A108.8
C2—C3—C1i118.67 (18)C10—C9—H9B108.8
C2—C3—C4106.02 (17)C8—C9—H9B108.8
C1i—C3—C4135.31 (19)H9A—C9—H9B107.6
C5—C4—C6122.45 (19)C9—C10—C11112.2 (2)
C5—C4—C3105.72 (18)C9—C10—H10A109.2
C6—C4—C3131.82 (18)C11—C10—H10A109.2
N1—C5—O1115.50 (19)C9—C10—H10B109.2
N1—C5—C4132.4 (2)C11—C10—H10B109.2
O1—C5—C4112.08 (18)H10A—C10—H10B107.9
O2—C6—O3121.9 (2)C10—C11—H11A109.5
O2—C6—C4124.58 (19)C10—C11—H11B109.5
O3—C6—C4113.54 (18)H11A—C11—H11B109.5
O3—C7—C8109.05 (16)C10—C11—H11C109.5
O3—C7—H7A109.9H11A—C11—H11C109.5
C8—C7—H7A109.9H11B—C11—H11C109.5
O3—C7—H7B109.9C5—N1—H1A119.4 (15)
C8—C7—H7B109.9C5—N1—H1B119.5 (15)
H7A—C7—H7B108.3H1A—N1—H1B121 (2)
C7—C8—C9110.81 (18)C5—O1—C2106.54 (16)
C7—C8—H8A109.5C6—O3—C7115.84 (15)
C9—C8—H8A109.5
C3i—C1—C2—C30.1 (3)C5—C4—C6—O2−0.8 (3)
C3i—C1—C2—O1179.41 (17)C3—C4—C6—O2178.5 (2)
C1—C2—C3—C1i−0.1 (3)C5—C4—C6—O3179.06 (18)
O1—C2—C3—C1i−179.49 (16)C3—C4—C6—O3−1.6 (3)
C1—C2—C3—C4179.22 (19)O3—C7—C8—C9−178.43 (16)
O1—C2—C3—C4−0.2 (2)C7—C8—C9—C10−179.49 (19)
C2—C3—C4—C50.7 (2)C8—C9—C10—C11179.2 (2)
C1i—C3—C4—C5179.8 (2)N1—C5—O1—C2−178.64 (17)
C2—C3—C4—C6−178.7 (2)C4—C5—O1—C20.8 (2)
C1i—C3—C4—C60.4 (4)C1—C2—O1—C5−179.79 (18)
C6—C4—C5—N1−2.1 (4)C3—C2—O1—C5−0.3 (2)
C3—C4—C5—N1178.4 (2)O2—C6—O3—C7−0.4 (3)
C6—C4—C5—O1178.55 (17)C4—C6—O3—C7179.72 (16)
C3—C4—C5—O1−0.9 (2)C8—C7—O3—C6−178.24 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2ii0.83 (2)2.11 (2)2.935 (3)171 (2)
N1—H1B···O1iii0.84 (2)2.34 (2)3.066 (2)144 (2)
N1—H1B···O20.84 (2)2.41 (2)2.942 (3)122.2 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O2i 0.83 (2)2.11 (2)2.935 (3)171 (2)
N1—H1B⋯O1ii 0.84 (2)2.34 (2)3.066 (2)144 (2)
N1—H1B⋯O20.84 (2)2.41 (2)2.942 (3)122.2 (18)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Self-assembled monolayers based on Pd-containing organometallic thiols: preparation and structural characterization.

Authors:  Rosa Vitaliano; Ilaria Fratoddi; Iole Venditti; Giuseppina Roviello; Chiara Battocchio; Giovanni Polzonetti; Maria Vittoria Russo
Journal:  J Phys Chem A       Date:  2009-12-31       Impact factor: 2.781

3.  Dakin-West reaction on 1-thyminyl acetic acid for the synthesis of 1,3-bis(1-thyminyl)-2-propanone, a heteroaromatic compound with nucleopeptide-binding properties.

Authors:  Giovanni N Roviello; Giuseppina Roviello; Domenica Musumeci; Enrico M Bucci; Carlo Pedone
Journal:  Amino Acids       Date:  2012-02-15       Impact factor: 3.520

4.  2-(4-Methyl-phen-yl)-6-nitro-1,3-benzoxazole.

Authors:  Roberto Centore; Vincenzo Piccialli; Angela Tuzi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-05

5.  3,3'-({4-[(4,5-Di-cyano-1H-imidazol-2-yl)diazen-yl]phen-yl}imino)-dipropionic acid.

Authors:  Roberto Centore; Vincenzo Piccialli; Angela Tuzi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-27
  5 in total
  1 in total

1.  Crystal structures of butyl 2-amino-5-hy-droxy-4-(4-nitro-phen-yl)benzo-furan-3-carboxyl-ate and 2-meth-oxy-ethyl 2-amino-5-hy-droxy-4-(4-nitro-phen-yl)benzo-furan-3-carboxyl-ate.

Authors:  Rosita Diana; Angela Tuzi; Barbara Panunzi; Antonio Carella; Ugo Caruso
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-05-24
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.