| Literature DB >> 23284412 |
Roberto Centore1, Vincenzo Piccialli.
Abstract
In the title compound, C(15)H(15)N(5)O, the benzene and pyridine rings make a dihedral angle of 30.86 (7)°. In the crystal, chains of mol-ecules are wrapped around the screw axes into compressed helices, through hydrogen bonding between the hy-droxy and cyano groups. The chains are linked by weak C-H⋯N and C-H⋯O inter-actions. The π conjugated unit of the mol-ecule is almost perpendicular to the helix axis, and the formation of the helix is allowed by a gauche-type torsion angle in the hy-droxy-ethyl tail. In this way, consecutive chromophore units along the chain are placed in a strict anti-parallel arrangement, and this is energetically favoured because of the high dipole moment of the mol-ecule.Entities:
Year: 2012 PMID: 23284412 PMCID: PMC3515185 DOI: 10.1107/S1600536812041396
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H15N5O | |
| Melting point: 439 K | |
| Monoclinic, | Mo |
| Cell parameters from 76 reflections | |
| θ = 5.6–23.2° | |
| µ = 0.09 mm−1 | |
| β = 101.07 (5)° | |
| Plate, red | |
| 0.40 × 0.10 × 0.05 mm | |
| Bruker–Nonius KappaCCD diffractometer | 2403 independent reflections |
| Radiation source: fine-focus sealed tube | 1336 reflections with |
| Graphite monochromator | |
| Detector resolution: 9 pixels mm-1 | θmax = 25.0°, θmin = 3.1° |
| CCD rotation images, thick slices scans | |
| Absorption correction: multi-scan ( | |
| 8528 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2403 reflections | (Δ/σ)max < 0.001 |
| 191 parameters | Δρmax = 0.14 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.39381 (17) | 0.5114 (4) | −0.0089 (3) | 0.0658 (9) | |
| H1A | 0.4101 | 0.4652 | −0.0821 | 0.079* | |
| H1B | 0.3398 | 0.5431 | −0.0314 | 0.079* | |
| C2 | 0.40363 (16) | 0.3604 (3) | 0.0877 (3) | 0.0539 (7) | |
| H2A | 0.3763 | 0.2511 | 0.0523 | 0.065* | |
| H2B | 0.4576 | 0.3290 | 0.1102 | 0.065* | |
| C3 | 0.43153 (16) | 0.4817 (4) | 0.3024 (3) | 0.0634 (8) | |
| H3A | 0.4355 | 0.3973 | 0.3704 | 0.095* | |
| H3B | 0.4154 | 0.6004 | 0.3266 | 0.095* | |
| H3C | 0.4806 | 0.4931 | 0.2788 | 0.095* | |
| C4 | 0.29960 (14) | 0.4002 (3) | 0.2038 (2) | 0.0389 (6) | |
| C5 | 0.27273 (14) | 0.4488 (3) | 0.3117 (2) | 0.0426 (7) | |
| H5 | 0.3073 | 0.4906 | 0.3803 | 0.051* | |
| C6 | 0.19600 (15) | 0.4353 (3) | 0.3169 (2) | 0.0416 (6) | |
| H6 | 0.1799 | 0.4664 | 0.3895 | 0.050* | |
| C7 | 0.14206 (14) | 0.3759 (3) | 0.2154 (2) | 0.0356 (6) | |
| C8 | 0.16750 (14) | 0.3312 (3) | 0.1079 (2) | 0.0412 (6) | |
| H8 | 0.1322 | 0.2941 | 0.0388 | 0.049* | |
| C9 | 0.24378 (14) | 0.3407 (3) | 0.1019 (2) | 0.0423 (7) | |
| H9 | 0.2593 | 0.3072 | 0.0292 | 0.051* | |
| C10 | −0.03818 (14) | 0.3687 (3) | 0.3055 (2) | 0.0377 (6) | |
| C11 | −0.09206 (15) | 0.4028 (3) | 0.2005 (2) | 0.0445 (7) | |
| H11 | −0.0770 | 0.4255 | 0.1258 | 0.053* | |
| C12 | −0.16836 (15) | 0.4026 (3) | 0.2081 (2) | 0.0479 (7) | |
| H12 | −0.2061 | 0.4250 | 0.1387 | 0.058* | |
| C13 | −0.18771 (15) | 0.3687 (3) | 0.3206 (3) | 0.0420 (6) | |
| C14 | −0.06318 (15) | 0.3353 (3) | 0.4146 (2) | 0.0484 (7) | |
| H14 | −0.0264 | 0.3124 | 0.4852 | 0.058* | |
| C15 | −0.26695 (18) | 0.3730 (3) | 0.3352 (3) | 0.0519 (7) | |
| N1 | 0.37562 (12) | 0.4124 (3) | 0.1987 (2) | 0.0459 (6) | |
| N2 | 0.06251 (12) | 0.3612 (2) | 0.21080 (19) | 0.0417 (5) | |
| N3 | 0.04319 (12) | 0.3723 (3) | 0.3147 (2) | 0.0455 (6) | |
| N4 | −0.13639 (13) | 0.3339 (3) | 0.4246 (2) | 0.0493 (6) | |
| N5 | −0.32935 (16) | 0.3783 (3) | 0.3473 (3) | 0.0743 (8) | |
| O1 | 0.43618 (12) | 0.6724 (3) | 0.0323 (2) | 0.0771 (7) | |
| H1O | 0.4068 | 0.7588 | 0.0816 | 0.093* |
| C1 | 0.0473 (19) | 0.093 (2) | 0.063 (2) | 0.0003 (17) | 0.0247 (16) | 0.0034 (17) |
| C2 | 0.0400 (17) | 0.0608 (17) | 0.067 (2) | 0.0028 (13) | 0.0272 (15) | −0.0057 (14) |
| C3 | 0.0399 (18) | 0.086 (2) | 0.064 (2) | −0.0063 (15) | 0.0079 (16) | 0.0043 (16) |
| C4 | 0.0361 (17) | 0.0363 (14) | 0.0476 (17) | 0.0008 (11) | 0.0161 (13) | 0.0059 (11) |
| C5 | 0.0417 (17) | 0.0504 (15) | 0.0365 (16) | −0.0018 (11) | 0.0096 (13) | 0.0015 (11) |
| C6 | 0.0458 (18) | 0.0425 (14) | 0.0411 (16) | 0.0033 (11) | 0.0202 (14) | 0.0034 (11) |
| C7 | 0.0308 (15) | 0.0362 (13) | 0.0420 (16) | −0.0004 (10) | 0.0128 (13) | 0.0053 (11) |
| C8 | 0.0390 (17) | 0.0465 (15) | 0.0391 (16) | −0.0018 (11) | 0.0102 (13) | −0.0007 (11) |
| C9 | 0.0440 (18) | 0.0458 (15) | 0.0411 (17) | −0.0047 (12) | 0.0186 (13) | −0.0054 (11) |
| C10 | 0.0328 (16) | 0.0368 (14) | 0.0464 (17) | −0.0024 (10) | 0.0152 (13) | −0.0026 (11) |
| C11 | 0.0447 (18) | 0.0501 (15) | 0.0432 (17) | −0.0018 (12) | 0.0195 (14) | −0.0005 (11) |
| C12 | 0.0415 (19) | 0.0572 (17) | 0.0463 (18) | 0.0016 (12) | 0.0113 (14) | 0.0006 (12) |
| C13 | 0.0404 (17) | 0.0366 (14) | 0.0537 (18) | −0.0061 (11) | 0.0207 (15) | −0.0089 (12) |
| C14 | 0.0409 (19) | 0.0608 (17) | 0.0449 (18) | −0.0036 (13) | 0.0117 (14) | 0.0022 (12) |
| C15 | 0.049 (2) | 0.0473 (16) | 0.064 (2) | −0.0056 (13) | 0.0236 (16) | −0.0076 (13) |
| N1 | 0.0332 (14) | 0.0546 (13) | 0.0525 (15) | 0.0002 (10) | 0.0153 (11) | −0.0010 (10) |
| N2 | 0.0466 (16) | 0.0383 (12) | 0.0435 (14) | 0.0014 (9) | 0.0174 (11) | 0.0022 (9) |
| N3 | 0.0462 (16) | 0.0468 (12) | 0.0469 (14) | −0.0011 (10) | 0.0180 (11) | 0.0027 (10) |
| N4 | 0.0442 (16) | 0.0613 (14) | 0.0461 (15) | −0.0063 (11) | 0.0183 (12) | −0.0022 (10) |
| N5 | 0.0514 (19) | 0.0733 (17) | 0.108 (2) | −0.0089 (13) | 0.0397 (16) | −0.0089 (15) |
| O1 | 0.0668 (16) | 0.0722 (14) | 0.1043 (18) | −0.0004 (11) | 0.0466 (13) | 0.0101 (12) |
| C1—O1 | 1.414 (3) | C7—N2 | 1.408 (3) |
| C1—C2 | 1.514 (4) | C8—C9 | 1.370 (3) |
| C1—H1A | 0.9700 | C8—H8 | 0.9300 |
| C1—H1B | 0.9700 | C9—H9 | 0.9300 |
| C2—N1 | 1.458 (3) | C10—C11 | 1.376 (4) |
| C2—H2A | 0.9700 | C10—C14 | 1.383 (3) |
| C2—H2B | 0.9700 | C10—N3 | 1.429 (3) |
| C3—N1 | 1.454 (3) | C11—C12 | 1.373 (3) |
| C3—H3A | 0.9600 | C11—H11 | 0.9300 |
| C3—H3B | 0.9600 | C12—C13 | 1.373 (3) |
| C3—H3C | 0.9600 | C12—H12 | 0.9300 |
| C4—N1 | 1.365 (3) | C13—N4 | 1.346 (3) |
| C4—C5 | 1.410 (3) | C13—C15 | 1.447 (4) |
| C4—C9 | 1.416 (3) | C14—N4 | 1.325 (3) |
| C5—C6 | 1.378 (3) | C14—H14 | 0.9300 |
| C5—H5 | 0.9300 | C15—N5 | 1.142 (3) |
| C6—C7 | 1.395 (3) | N2—N3 | 1.262 (3) |
| C6—H6 | 0.9300 | O1—H1O | 1.0341 |
| C7—C8 | 1.387 (3) | ||
| O1—C1—C2 | 112.8 (2) | C9—C8—C7 | 121.1 (2) |
| O1—C1—H1A | 109.0 | C9—C8—H8 | 119.4 |
| C2—C1—H1A | 109.0 | C7—C8—H8 | 119.4 |
| O1—C1—H1B | 109.0 | C8—C9—C4 | 121.6 (2) |
| C2—C1—H1B | 109.0 | C8—C9—H9 | 119.2 |
| H1A—C1—H1B | 107.8 | C4—C9—H9 | 119.2 |
| N1—C2—C1 | 113.2 (2) | C11—C10—C14 | 118.5 (2) |
| N1—C2—H2A | 108.9 | C11—C10—N3 | 125.9 (2) |
| C1—C2—H2A | 108.9 | C14—C10—N3 | 115.5 (2) |
| N1—C2—H2B | 108.9 | C12—C11—C10 | 118.9 (3) |
| C1—C2—H2B | 108.9 | C12—C11—H11 | 120.6 |
| H2A—C2—H2B | 107.8 | C10—C11—H11 | 120.6 |
| N1—C3—H3A | 109.5 | C13—C12—C11 | 118.5 (3) |
| N1—C3—H3B | 109.5 | C13—C12—H12 | 120.8 |
| H3A—C3—H3B | 109.5 | C11—C12—H12 | 120.8 |
| N1—C3—H3C | 109.5 | N4—C13—C12 | 124.0 (3) |
| H3A—C3—H3C | 109.5 | N4—C13—C15 | 115.0 (2) |
| H3B—C3—H3C | 109.5 | C12—C13—C15 | 121.0 (3) |
| N1—C4—C5 | 121.1 (2) | N4—C14—C10 | 123.9 (3) |
| N1—C4—C9 | 122.2 (2) | N4—C14—H14 | 118.1 |
| C5—C4—C9 | 116.6 (2) | C10—C14—H14 | 118.1 |
| C6—C5—C4 | 121.0 (2) | N5—C15—C13 | 179.3 (3) |
| C6—C5—H5 | 119.5 | C4—N1—C3 | 121.4 (2) |
| C4—C5—H5 | 119.5 | C4—N1—C2 | 121.2 (2) |
| C5—C6—C7 | 121.3 (2) | C3—N1—C2 | 117.4 (2) |
| C5—C6—H6 | 119.3 | N3—N2—C7 | 114.1 (2) |
| C7—C6—H6 | 119.3 | N2—N3—C10 | 112.4 (2) |
| C8—C7—C6 | 118.3 (2) | C14—N4—C13 | 116.2 (2) |
| C8—C7—N2 | 116.1 (2) | C1—O1—H1O | 112.1 |
| C6—C7—N2 | 125.6 (2) | ||
| O1—C1—C2—N1 | 62.7 (3) | C11—C10—C14—N4 | 0.0 (3) |
| N1—C4—C5—C6 | −179.6 (2) | N3—C10—C14—N4 | 177.4 (2) |
| C9—C4—C5—C6 | 1.1 (3) | C5—C4—N1—C3 | −2.1 (3) |
| C4—C5—C6—C7 | −1.0 (3) | C9—C4—N1—C3 | 177.2 (2) |
| C5—C6—C7—C8 | −0.3 (3) | C5—C4—N1—C2 | 179.4 (2) |
| C5—C6—C7—N2 | −178.6 (2) | C9—C4—N1—C2 | −1.4 (3) |
| C6—C7—C8—C9 | 1.5 (3) | C1—C2—N1—C4 | 82.0 (3) |
| N2—C7—C8—C9 | 180.0 (2) | C1—C2—N1—C3 | −96.6 (3) |
| C7—C8—C9—C4 | −1.4 (3) | C8—C7—N2—N3 | 168.65 (18) |
| N1—C4—C9—C8 | −179.2 (2) | C6—C7—N2—N3 | −13.0 (3) |
| C5—C4—C9—C8 | 0.1 (3) | C7—N2—N3—C10 | 176.23 (17) |
| C14—C10—C11—C12 | 0.1 (3) | C11—C10—N3—N2 | −18.0 (3) |
| N3—C10—C11—C12 | −176.9 (2) | C14—C10—N3—N2 | 164.91 (19) |
| C10—C11—C12—C13 | 0.1 (3) | C10—C14—N4—C13 | −0.4 (3) |
| C11—C12—C13—N4 | −0.6 (4) | C12—C13—N4—C14 | 0.7 (3) |
| C11—C12—C13—C15 | 177.8 (2) | C15—C13—N4—C14 | −177.8 (2) |
| H··· | ||||
| O1—H1 | 1.03 | 1.92 | 2.925 (4) | 165 |
| C6—H6···N4ii | 0.93 | 2.74 | 3.637 (4) | 162 |
| C2—H2 | 0.97 | 2.68 | 3.369 (4) | 129 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 1.03 | 1.92 | 2.925 (4) | 165 |
| C6—H6⋯N4ii | 0.93 | 2.74 | 3.637 (4) | 162 |
| C2—H2 | 0.97 | 2.68 | 3.369 (4) | 129 |
Symmetry codes: (i) ; (ii) ; (iii) .