Literature DB >> 23284412

2-Cyano-5-({4-[N-methyl-N-(2-hy-droxy-eth-yl)amino] phen-yl}diazen-yl)pyridine.

Roberto Centore1, Vincenzo Piccialli.   

Abstract

In the title compound, C(15)H(15)N(5)O, the benzene and pyridine rings make a dihedral angle of 30.86 (7)°. In the crystal, chains of mol-ecules are wrapped around the screw axes into compressed helices, through hydrogen bonding between the hy-droxy and cyano groups. The chains are linked by weak C-H⋯N and C-H⋯O inter-actions. The π conjugated unit of the mol-ecule is almost perpendicular to the helix axis, and the formation of the helix is allowed by a gauche-type torsion angle in the hy-droxy-ethyl tail. In this way, consecutive chromophore units along the chain are placed in a strict anti-parallel arrangement, and this is energetically favoured because of the high dipole moment of the mol-ecule.

Entities:  

Year:  2012        PMID: 23284412      PMCID: PMC3515185          DOI: 10.1107/S1600536812041396

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general information on non-linear optical compounds, see: Singer et al. (1989 ▶); Dalton (2002 ▶). For structural and theoretical analysis of conjugation in push–pull mol­ecules, see: Gainsford et al. (2008 ▶); Centore et al. (2009 ▶); Capobianco et al. (2012 ▶). For the local packing modes of non-linear optical chromophores, see: Coe et al. (2000 ▶); Thallapally et al. (2002 ▶); Centore et al. (2006 ▶). For theoretical computations on similar compounds, see: Willets et al. (1992 ▶); Castaldo et al. (2002 ▶); Locatelli et al. (2005 ▶). For the CSD see: Allen (2002 ▶). For the synthesis of related compounds, see: Bruno et al. (2002 ▶); Centore et al. (2007 ▶); Centore et al. (2012 ▶).

Experimental

Crystal data

C15H15N5O M = 281.32 Monoclinic, a = 17.755 (8) Å b = 7.240 (4) Å c = 11.045 (8) Å β = 101.07 (5)° V = 1393.4 (14) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.40 × 0.10 × 0.05 mm

Data collection

Bruker–Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.965, T max = 0.996 8528 measured reflections 2403 independent reflections 1336 reflections with I > 2σ(I) R int = 0.069

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.139 S = 1.02 2403 reflections 191 parameters H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.21 e Å−3 Data collection: COLLECT (Nonius, 1999 ▶); cell refinement: CELLFITW (Centore, 2004 ▶); data reduction: EVALCCD (Duisenberg et al., 2003 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812041396/fj2599sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812041396/fj2599Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812041396/fj2599Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H15N5ODx = 1.341 Mg m3
Mr = 281.32Melting point: 439 K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 17.755 (8) ÅCell parameters from 76 reflections
b = 7.240 (4) Åθ = 5.6–23.2°
c = 11.045 (8) ŵ = 0.09 mm1
β = 101.07 (5)°T = 293 K
V = 1393.4 (14) Å3Plate, red
Z = 40.40 × 0.10 × 0.05 mm
F(000) = 592
Bruker–Nonius KappaCCD diffractometer2403 independent reflections
Radiation source: fine-focus sealed tube1336 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.069
Detector resolution: 9 pixels mm-1θmax = 25.0°, θmin = 3.1°
CCD rotation images, thick slices scansh = −20→21
Absorption correction: multi-scan (SADABS; Bruker, 2001)k = −7→8
Tmin = 0.965, Tmax = 0.996l = −13→11
8528 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.139H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0646P)2 + 0.0464P] where P = (Fo2 + 2Fc2)/3
2403 reflections(Δ/σ)max < 0.001
191 parametersΔρmax = 0.14 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.39381 (17)0.5114 (4)−0.0089 (3)0.0658 (9)
H1A0.41010.4652−0.08210.079*
H1B0.33980.5431−0.03140.079*
C20.40363 (16)0.3604 (3)0.0877 (3)0.0539 (7)
H2A0.37630.25110.05230.065*
H2B0.45760.32900.11020.065*
C30.43153 (16)0.4817 (4)0.3024 (3)0.0634 (8)
H3A0.43550.39730.37040.095*
H3B0.41540.60040.32660.095*
H3C0.48060.49310.27880.095*
C40.29960 (14)0.4002 (3)0.2038 (2)0.0389 (6)
C50.27273 (14)0.4488 (3)0.3117 (2)0.0426 (7)
H50.30730.49060.38030.051*
C60.19600 (15)0.4353 (3)0.3169 (2)0.0416 (6)
H60.17990.46640.38950.050*
C70.14206 (14)0.3759 (3)0.2154 (2)0.0356 (6)
C80.16750 (14)0.3312 (3)0.1079 (2)0.0412 (6)
H80.13220.29410.03880.049*
C90.24378 (14)0.3407 (3)0.1019 (2)0.0423 (7)
H90.25930.30720.02920.051*
C10−0.03818 (14)0.3687 (3)0.3055 (2)0.0377 (6)
C11−0.09206 (15)0.4028 (3)0.2005 (2)0.0445 (7)
H11−0.07700.42550.12580.053*
C12−0.16836 (15)0.4026 (3)0.2081 (2)0.0479 (7)
H12−0.20610.42500.13870.058*
C13−0.18771 (15)0.3687 (3)0.3206 (3)0.0420 (6)
C14−0.06318 (15)0.3353 (3)0.4146 (2)0.0484 (7)
H14−0.02640.31240.48520.058*
C15−0.26695 (18)0.3730 (3)0.3352 (3)0.0519 (7)
N10.37562 (12)0.4124 (3)0.1987 (2)0.0459 (6)
N20.06251 (12)0.3612 (2)0.21080 (19)0.0417 (5)
N30.04319 (12)0.3723 (3)0.3147 (2)0.0455 (6)
N4−0.13639 (13)0.3339 (3)0.4246 (2)0.0493 (6)
N5−0.32935 (16)0.3783 (3)0.3473 (3)0.0743 (8)
O10.43618 (12)0.6724 (3)0.0323 (2)0.0771 (7)
H1O0.40680.75880.08160.093*
U11U22U33U12U13U23
C10.0473 (19)0.093 (2)0.063 (2)0.0003 (17)0.0247 (16)0.0034 (17)
C20.0400 (17)0.0608 (17)0.067 (2)0.0028 (13)0.0272 (15)−0.0057 (14)
C30.0399 (18)0.086 (2)0.064 (2)−0.0063 (15)0.0079 (16)0.0043 (16)
C40.0361 (17)0.0363 (14)0.0476 (17)0.0008 (11)0.0161 (13)0.0059 (11)
C50.0417 (17)0.0504 (15)0.0365 (16)−0.0018 (11)0.0096 (13)0.0015 (11)
C60.0458 (18)0.0425 (14)0.0411 (16)0.0033 (11)0.0202 (14)0.0034 (11)
C70.0308 (15)0.0362 (13)0.0420 (16)−0.0004 (10)0.0128 (13)0.0053 (11)
C80.0390 (17)0.0465 (15)0.0391 (16)−0.0018 (11)0.0102 (13)−0.0007 (11)
C90.0440 (18)0.0458 (15)0.0411 (17)−0.0047 (12)0.0186 (13)−0.0054 (11)
C100.0328 (16)0.0368 (14)0.0464 (17)−0.0024 (10)0.0152 (13)−0.0026 (11)
C110.0447 (18)0.0501 (15)0.0432 (17)−0.0018 (12)0.0195 (14)−0.0005 (11)
C120.0415 (19)0.0572 (17)0.0463 (18)0.0016 (12)0.0113 (14)0.0006 (12)
C130.0404 (17)0.0366 (14)0.0537 (18)−0.0061 (11)0.0207 (15)−0.0089 (12)
C140.0409 (19)0.0608 (17)0.0449 (18)−0.0036 (13)0.0117 (14)0.0022 (12)
C150.049 (2)0.0473 (16)0.064 (2)−0.0056 (13)0.0236 (16)−0.0076 (13)
N10.0332 (14)0.0546 (13)0.0525 (15)0.0002 (10)0.0153 (11)−0.0010 (10)
N20.0466 (16)0.0383 (12)0.0435 (14)0.0014 (9)0.0174 (11)0.0022 (9)
N30.0462 (16)0.0468 (12)0.0469 (14)−0.0011 (10)0.0180 (11)0.0027 (10)
N40.0442 (16)0.0613 (14)0.0461 (15)−0.0063 (11)0.0183 (12)−0.0022 (10)
N50.0514 (19)0.0733 (17)0.108 (2)−0.0089 (13)0.0397 (16)−0.0089 (15)
O10.0668 (16)0.0722 (14)0.1043 (18)−0.0004 (11)0.0466 (13)0.0101 (12)
C1—O11.414 (3)C7—N21.408 (3)
C1—C21.514 (4)C8—C91.370 (3)
C1—H1A0.9700C8—H80.9300
C1—H1B0.9700C9—H90.9300
C2—N11.458 (3)C10—C111.376 (4)
C2—H2A0.9700C10—C141.383 (3)
C2—H2B0.9700C10—N31.429 (3)
C3—N11.454 (3)C11—C121.373 (3)
C3—H3A0.9600C11—H110.9300
C3—H3B0.9600C12—C131.373 (3)
C3—H3C0.9600C12—H120.9300
C4—N11.365 (3)C13—N41.346 (3)
C4—C51.410 (3)C13—C151.447 (4)
C4—C91.416 (3)C14—N41.325 (3)
C5—C61.378 (3)C14—H140.9300
C5—H50.9300C15—N51.142 (3)
C6—C71.395 (3)N2—N31.262 (3)
C6—H60.9300O1—H1O1.0341
C7—C81.387 (3)
O1—C1—C2112.8 (2)C9—C8—C7121.1 (2)
O1—C1—H1A109.0C9—C8—H8119.4
C2—C1—H1A109.0C7—C8—H8119.4
O1—C1—H1B109.0C8—C9—C4121.6 (2)
C2—C1—H1B109.0C8—C9—H9119.2
H1A—C1—H1B107.8C4—C9—H9119.2
N1—C2—C1113.2 (2)C11—C10—C14118.5 (2)
N1—C2—H2A108.9C11—C10—N3125.9 (2)
C1—C2—H2A108.9C14—C10—N3115.5 (2)
N1—C2—H2B108.9C12—C11—C10118.9 (3)
C1—C2—H2B108.9C12—C11—H11120.6
H2A—C2—H2B107.8C10—C11—H11120.6
N1—C3—H3A109.5C13—C12—C11118.5 (3)
N1—C3—H3B109.5C13—C12—H12120.8
H3A—C3—H3B109.5C11—C12—H12120.8
N1—C3—H3C109.5N4—C13—C12124.0 (3)
H3A—C3—H3C109.5N4—C13—C15115.0 (2)
H3B—C3—H3C109.5C12—C13—C15121.0 (3)
N1—C4—C5121.1 (2)N4—C14—C10123.9 (3)
N1—C4—C9122.2 (2)N4—C14—H14118.1
C5—C4—C9116.6 (2)C10—C14—H14118.1
C6—C5—C4121.0 (2)N5—C15—C13179.3 (3)
C6—C5—H5119.5C4—N1—C3121.4 (2)
C4—C5—H5119.5C4—N1—C2121.2 (2)
C5—C6—C7121.3 (2)C3—N1—C2117.4 (2)
C5—C6—H6119.3N3—N2—C7114.1 (2)
C7—C6—H6119.3N2—N3—C10112.4 (2)
C8—C7—C6118.3 (2)C14—N4—C13116.2 (2)
C8—C7—N2116.1 (2)C1—O1—H1O112.1
C6—C7—N2125.6 (2)
O1—C1—C2—N162.7 (3)C11—C10—C14—N40.0 (3)
N1—C4—C5—C6−179.6 (2)N3—C10—C14—N4177.4 (2)
C9—C4—C5—C61.1 (3)C5—C4—N1—C3−2.1 (3)
C4—C5—C6—C7−1.0 (3)C9—C4—N1—C3177.2 (2)
C5—C6—C7—C8−0.3 (3)C5—C4—N1—C2179.4 (2)
C5—C6—C7—N2−178.6 (2)C9—C4—N1—C2−1.4 (3)
C6—C7—C8—C91.5 (3)C1—C2—N1—C482.0 (3)
N2—C7—C8—C9180.0 (2)C1—C2—N1—C3−96.6 (3)
C7—C8—C9—C4−1.4 (3)C8—C7—N2—N3168.65 (18)
N1—C4—C9—C8−179.2 (2)C6—C7—N2—N3−13.0 (3)
C5—C4—C9—C80.1 (3)C7—N2—N3—C10176.23 (17)
C14—C10—C11—C120.1 (3)C11—C10—N3—N2−18.0 (3)
N3—C10—C11—C12−176.9 (2)C14—C10—N3—N2164.91 (19)
C10—C11—C12—C130.1 (3)C10—C14—N4—C13−0.4 (3)
C11—C12—C13—N4−0.6 (4)C12—C13—N4—C140.7 (3)
C11—C12—C13—C15177.8 (2)C15—C13—N4—C14−177.8 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1O···N5i1.031.922.925 (4)165
C6—H6···N4ii0.932.743.637 (4)162
C2—H2B···O1iii0.972.683.369 (4)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1O⋯N5i 1.031.922.925 (4)165
C6—H6⋯N4ii 0.932.743.637 (4)162
C2—H2B⋯O1iii 0.972.683.369 (4)129

Symmetry codes: (i) ; (ii) ; (iii) .

  7 in total

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  7 in total
  1 in total

1.  3,3'-({4-[(4,5-Di-cyano-1H-imidazol-2-yl)diazen-yl]phen-yl}imino)-dipropionic acid.

Authors:  Roberto Centore; Vincenzo Piccialli; Angela Tuzi
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  1 in total

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