Literature DB >> 23723871

3-Methyl-4-{(E)-[4-(methyl-sulfan-yl)benzyl-idene]amino}-1H-1,2,4-triazole-5(4H)-thione.

B K Sarojini1, P S Manjula, Gurumurthy Hegde, Dalbir Kour, Vivek K Gupta, Rajni Kant.   

Abstract

In the title mol-ecule, C11H12N4S2, the dihedral angle between the triazole and benzene rings is 21.31 (5)°. A weak intra-molecular C-H⋯S hydrogen bond generates an S(6) ring motif. In the crystal, pairs of N-H⋯S hydrogen bonds form inversion dimers. In addition, π-π inter-actions are observed between the benzene rings, with a centroid-centroid separation of 3.7599 (11) Å.

Entities:  

Year:  2013        PMID: 23723871      PMCID: PMC3648251          DOI: 10.1107/S1600536813009690

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to Schiff base compounds, see: Dubey & Vaid (1991 ▶); Yadav et al. (1994 ▶); Galic et al. (2001 ▶). For biological applications of sulfur- and nitro­gen-containing compounds, see: Wei et al. (1981 ▶, 1982 ▶); Thieme et al. (1973a ▶,b ▶); Dornow et al. (1964 ▶); Barrera et al. (1985 ▶); Malik et al., (2011 ▶). For related structures, see: Devarajegowda et al. (2012 ▶); Fun et al. (2008 ▶); Wang et al. (2008 ▶). For standard bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond graph-set motifs, see: Bernstein et al.(1995 ▶).

Experimental

Crystal data

C11H12N4S2 M = 264.37 Triclinic, a = 7.7873 (2) Å b = 9.5982 (2) Å c = 9.6041 (2) Å α = 76.608 (2)° β = 70.602 (2)° γ = 68.570 (2)° V = 625.30 (2) Å3 Z = 2 Mo Kα radiation μ = 0.41 mm−1 T = 293 K 0.3 × 0.2 × 0.1 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.866, T max = 1.000 30316 measured reflections 2449 independent reflections 2121 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.088 S = 1.03 2449 reflections 156 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813009690/lh5604sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813009690/lh5604Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813009690/lh5604Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12N4S2Z = 2
Mr = 264.37F(000) = 276
Triclinic, P1Dx = 1.404 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.7873 (2) ÅCell parameters from 15170 reflections
b = 9.5982 (2) Åθ = 3.4–29.1°
c = 9.6041 (2) ŵ = 0.41 mm1
α = 76.608 (2)°T = 293 K
β = 70.602 (2)°Block, white
γ = 68.570 (2)°0.3 × 0.2 × 0.1 mm
V = 625.30 (2) Å3
Oxford Diffraction Xcalibur Sapphire3 diffractometer2449 independent reflections
Radiation source: fine-focus sealed tube2121 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.041
Detector resolution: 16.1049 pixels mm-1θmax = 26.0°, θmin = 3.4°
ω scanh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −11→11
Tmin = 0.866, Tmax = 1.000l = −11→11
30316 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0446P)2 + 0.2502P] where P = (Fo2 + 2Fc2)/3
2449 reflections(Δ/σ)max = 0.001
156 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.17 e Å3
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.15017 (7)0.32917 (5)0.84285 (5)0.04691 (16)
S20.40556 (6)−0.40134 (5)0.33254 (5)0.03932 (14)
N1−0.3639 (2)0.35160 (17)1.09693 (16)0.0409 (4)
N2−0.2053 (2)0.39804 (16)1.03276 (16)0.0389 (3)
H2−0.19540.47641.05420.047*
N4−0.14673 (19)0.20528 (14)0.93293 (14)0.0308 (3)
N7−0.0745 (2)0.07943 (15)0.85714 (15)0.0356 (3)
C3−0.0676 (2)0.31151 (18)0.93426 (18)0.0322 (3)
C5−0.3237 (2)0.23338 (19)1.03460 (18)0.0351 (4)
C6−0.4492 (3)0.1392 (2)1.0656 (2)0.0530 (5)
H6A−0.55730.17021.14920.079*
H6B−0.37840.03531.08760.079*
H6C−0.49320.15110.98000.079*
C80.0461 (2)0.08739 (18)0.73055 (19)0.0359 (4)
H80.08180.17430.69410.043*
C90.1295 (2)−0.03748 (18)0.64155 (18)0.0332 (3)
C100.2741 (3)−0.0280 (2)0.5103 (2)0.0411 (4)
H100.31620.05610.48310.049*
C110.3554 (3)−0.1409 (2)0.4205 (2)0.0413 (4)
H110.4527−0.13310.33390.050*
C120.2930 (2)−0.26694 (18)0.45838 (18)0.0324 (3)
C130.1500 (2)−0.27788 (19)0.58982 (18)0.0367 (4)
H130.1084−0.36220.61720.044*
C140.0695 (2)−0.16417 (19)0.67990 (18)0.0364 (4)
H14−0.0262−0.17270.76740.044*
C150.2776 (3)−0.5350 (2)0.4030 (2)0.0513 (5)
H15A0.2824−0.57490.50350.077*
H15B0.3350−0.61570.34230.077*
H15C0.1464−0.48640.40110.077*
U11U22U33U12U13U23
S10.0418 (3)0.0503 (3)0.0534 (3)−0.0245 (2)0.0056 (2)−0.0266 (2)
S20.0395 (2)0.0369 (2)0.0370 (2)−0.00991 (18)0.00102 (18)−0.01659 (18)
N10.0374 (8)0.0447 (8)0.0427 (8)−0.0163 (7)−0.0004 (6)−0.0192 (7)
N20.0401 (8)0.0359 (7)0.0437 (8)−0.0157 (6)−0.0011 (6)−0.0196 (6)
N40.0360 (7)0.0278 (6)0.0321 (7)−0.0115 (5)−0.0071 (6)−0.0110 (5)
N70.0419 (8)0.0298 (7)0.0387 (8)−0.0102 (6)−0.0094 (6)−0.0152 (6)
C30.0369 (8)0.0293 (8)0.0321 (8)−0.0110 (7)−0.0065 (7)−0.0102 (6)
C50.0363 (8)0.0378 (9)0.0333 (8)−0.0134 (7)−0.0062 (7)−0.0106 (7)
C60.0496 (11)0.0582 (12)0.0599 (12)−0.0311 (10)−0.0024 (9)−0.0191 (10)
C80.0431 (9)0.0310 (8)0.0377 (9)−0.0113 (7)−0.0117 (7)−0.0114 (7)
C90.0353 (8)0.0314 (8)0.0344 (8)−0.0057 (7)−0.0112 (7)−0.0121 (7)
C100.0419 (9)0.0377 (9)0.0456 (10)−0.0163 (8)−0.0056 (8)−0.0123 (8)
C110.0386 (9)0.0414 (9)0.0398 (9)−0.0139 (8)0.0018 (7)−0.0135 (7)
C120.0310 (8)0.0312 (8)0.0331 (8)−0.0038 (6)−0.0087 (7)−0.0103 (6)
C130.0414 (9)0.0304 (8)0.0369 (9)−0.0112 (7)−0.0049 (7)−0.0104 (7)
C140.0389 (9)0.0356 (9)0.0316 (8)−0.0098 (7)−0.0034 (7)−0.0107 (7)
C150.0498 (11)0.0516 (11)0.0546 (12)−0.0224 (9)0.0052 (9)−0.0285 (9)
S1—C31.6818 (17)C8—C91.458 (2)
S2—C121.7565 (16)C8—H80.9300
S2—C151.7837 (19)C9—C141.388 (2)
N1—C51.294 (2)C9—C101.395 (2)
N1—N21.3688 (19)C10—C111.374 (2)
N2—C31.332 (2)C10—H100.9300
N2—H20.8600C11—C121.393 (2)
N4—C51.372 (2)C11—H110.9300
N4—C31.3744 (19)C12—C131.391 (2)
N4—N71.3944 (18)C13—C141.382 (2)
N7—C81.272 (2)C13—H130.9300
C5—C61.479 (2)C14—H140.9300
C6—H6A0.9600C15—H15A0.9600
C6—H6B0.9600C15—H15B0.9600
C6—H6C0.9600C15—H15C0.9600
C12—S2—C15104.35 (8)C14—C9—C10118.42 (15)
C5—N1—N2103.74 (13)C14—C9—C8123.14 (15)
C3—N2—N1114.29 (13)C10—C9—C8118.44 (15)
C3—N2—H2122.9C11—C10—C9121.01 (16)
N1—N2—H2122.9C11—C10—H10119.5
C5—N4—C3108.19 (13)C9—C10—H10119.5
C5—N4—N7119.83 (13)C10—C11—C12120.40 (16)
C3—N4—N7131.85 (13)C10—C11—H11119.8
C8—N7—N4116.65 (13)C12—C11—H11119.8
N2—C3—N4102.66 (14)C13—C12—C11118.93 (15)
N2—C3—S1126.93 (12)C13—C12—S2125.20 (13)
N4—C3—S1130.36 (12)C11—C12—S2115.88 (13)
N1—C5—N4111.08 (14)C14—C13—C12120.34 (16)
N1—C5—C6125.65 (16)C14—C13—H13119.8
N4—C5—C6123.27 (15)C12—C13—H13119.8
C5—C6—H6A109.5C13—C14—C9120.90 (16)
C5—C6—H6B109.5C13—C14—H14119.6
H6A—C6—H6B109.5C9—C14—H14119.6
C5—C6—H6C109.5S2—C15—H15A109.5
H6A—C6—H6C109.5S2—C15—H15B109.5
H6B—C6—H6C109.5H15A—C15—H15B109.5
N7—C8—C9121.10 (15)S2—C15—H15C109.5
N7—C8—H8119.4H15A—C15—H15C109.5
C9—C8—H8119.5H15B—C15—H15C109.5
C5—N1—N2—C3−0.8 (2)N4—N7—C8—C9−179.55 (14)
C5—N4—N7—C8153.95 (16)N7—C8—C9—C147.1 (3)
C3—N4—N7—C8−30.8 (2)N7—C8—C9—C10−174.05 (16)
N1—N2—C3—N41.71 (19)C14—C9—C10—C110.1 (3)
N1—N2—C3—S1−176.03 (13)C8—C9—C10—C11−178.77 (17)
C5—N4—C3—N2−1.95 (17)C9—C10—C11—C120.7 (3)
N7—N4—C3—N2−177.60 (15)C10—C11—C12—C13−1.3 (3)
C5—N4—C3—S1175.68 (14)C10—C11—C12—S2178.86 (14)
N7—N4—C3—S10.0 (3)C15—S2—C12—C135.91 (18)
N2—N1—C5—N4−0.59 (19)C15—S2—C12—C11−174.23 (14)
N2—N1—C5—C6179.81 (18)C11—C12—C13—C141.0 (3)
C3—N4—C5—N11.67 (19)S2—C12—C13—C14−179.17 (13)
N7—N4—C5—N1177.93 (14)C12—C13—C14—C9−0.1 (3)
C3—N4—C5—C6−178.72 (16)C10—C9—C14—C13−0.4 (3)
N7—N4—C5—C6−2.5 (2)C8—C9—C14—C13178.42 (16)
D—H···AD—HH···AD···AD—H···A
C8—H8···S10.932.573.212 (2)126
N2—H2···S1i0.862.483.328 (2)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8⋯S10.932.573.212 (2)126
N2—H2⋯S1i 0.862.483.328 (2)169

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-(5-Bromo-2-hydroxy-benzyl-idene-amino)-3-methyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Min Wang; Minna Cao; Bo Hu; Cuixia Cheng; Xuegang Song
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-04

3.  4-[(E)-(4-Fluoro-benzyl-idene)amino]-3-methyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  H C Devarajegowda; S Jeyaseelan; R Sathishkumar; Agnes Sylvia D'souza; Alphonsus D'souza
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-05

4.  4-[(E)-4-Bromo-benzyl-ideneamino]-3-methyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Hoong-Kun Fun; Samuel Robinson Jebas; K V Sujith; P S Patil; B Kalluraya; A Muralidharan; S M Dharmaprakash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-16

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  The crystal structures of three 3-methyl-1H-1,2,4-triazole-5-thio-nes, including a second polymorph of 4-[(E)-(5-bromo-2-hy-droxy-benzyl-idene)amino]-3-methyl-1H-1,2,4-triazole-5(4H)-thione and a redetermination of 4-amino-3-methyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Padmanabha S Manjula; Balladka K Sarojini; Hemmige S Yathirajan; Mehmet Akkurt; Cem Cüneyt Ersanlı; Christopher Glidewell
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-08-06

2.  Crystal structure of 4-[(E)-(4-chloro-benzyl-idene)amino]-3-(2-methyl-benz-yl)-1H-1,2,4-triazole-5(4H)-thione.

Authors:  B K Sarojini; P S Manjula; B Narayana; Sumati Anthal; Rajni Kant
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-16
  2 in total

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