Literature DB >> 21201405

4-(5-Bromo-2-hydroxy-benzyl-idene-amino)-3-methyl-1H-1,2,4-triazole-5(4H)-thione.

Min Wang1, Minna Cao, Bo Hu, Cuixia Cheng, Xuegang Song.   

Abstract

In the title compound, C(10)H(9)BrN(4)OS, the triazole ring forms a dihedral angle of 72.05 (14)° with the benzene ring. The conformation of the mol-ecule is stabilized by intra-molecular O-H⋯·N hydrogen bonding. The crystal packing is determined by inter-molecular N-H⋯S inter-actions, a short Br⋯S contact of 3.4464 (13) Å and π-π stacking of the triazole rings and of the benzene rings (centroid-centroid distances of 3.4109 and 3.569 Å, respectively).

Entities:  

Year:  2008        PMID: 21201405      PMCID: PMC2960248          DOI: 10.1107/S1600536807062149

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Allen et al. (1987 ▶); Awad et al. (1991 ▶); Eweiss et al. (1986 ▶); Ji et al. (2002 ▶); Mohan (1983 ▶); Xu et al. (2002 ▶).

Experimental

Crystal data

C10H9BrN4OS M = 313.18 Triclinic, a = 6.9780 (8) Å b = 7.1529 (8) Å c = 12.3119 (14) Å α = 83.561 (2)° β = 88.820 (2)° γ = 79.987 (2)° V = 601.35 (12) Å3 Z = 2 Mo Kα radiation μ = 3.58 mm−1 T = 293 (2) K 0.30 × 0.28 × 0.26 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (Blessing; 1995 ▶) T min = 0.404, T max = 0.519 (expected range = 0.307–0.394) 4340 measured reflections 2560 independent reflections 1977 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.111 S = 1.10 2560 reflections 161 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.59 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997 ▶); molecular graphics: SHELXTL (Bruker, 2001 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536807062149/gk2112sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807062149/gk2112Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9BrN4OSZ = 2
Mr = 313.18F000 = 312
Triclinic, P1Dx = 1.730 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 6.9780 (8) ÅCell parameters from 1728 reflections
b = 7.1529 (8) Åθ = 2.9–26.2º
c = 12.3119 (14) ŵ = 3.58 mm1
α = 83.561 (2)ºT = 293 (2) K
β = 88.820 (2)ºPlate, yellow
γ = 79.987 (2)º0.30 × 0.28 × 0.26 mm
V = 601.35 (12) Å3
Bruker SMART CCD diffractometer2560 independent reflections
Radiation source: fine-focus sealed tube1977 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.038
T = 293(2) Kθmax = 27.0º
ω scansθmin = 1.7º
Absorption correction: multi-scan(Blessing; 1995)h = −8→8
Tmin = 0.404, Tmax = 0.519k = −9→8
4340 measured reflectionsl = −13→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.111  w = 1/[σ2(Fo2) + (0.0416P)2 + 0.455P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.001
2560 reflectionsΔρmax = 0.42 e Å3
161 parametersΔρmin = −0.58 e Å3
2 restraintsExtinction correction: none
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.79546 (7)0.36351 (7)0.64076 (4)0.05088 (18)
C10.2803 (6)0.3219 (6)0.0688 (3)0.0386 (9)
C20.5585 (6)0.2362 (6)−0.0218 (3)0.0383 (9)
C30.7615 (6)0.1524 (7)−0.0409 (4)0.0500 (11)
H3A0.78320.1481−0.11780.075*
H3B0.78860.0253−0.00380.075*
H3C0.84570.2290−0.01340.075*
C40.5834 (6)0.2340 (6)0.2504 (3)0.0387 (9)
H40.55140.36630.23710.046*
C50.6609 (5)0.1469 (6)0.3552 (3)0.0350 (9)
C60.6983 (5)−0.0480 (6)0.3857 (3)0.0377 (9)
C70.7585 (6)−0.1188 (6)0.4911 (3)0.0415 (10)
H70.7807−0.25000.51140.050*
C80.7855 (6)0.0030 (6)0.5659 (3)0.0422 (10)
H80.8259−0.04560.63650.051*
C90.7521 (5)0.2008 (6)0.5355 (3)0.0356 (9)
C100.6892 (6)0.2752 (6)0.4322 (3)0.0384 (9)
H100.66540.40650.41260.046*
N10.4330 (5)0.3251 (5)−0.0963 (3)0.0419 (8)
N20.2652 (5)0.3746 (5)−0.0387 (3)0.0372 (8)
N30.4714 (5)0.2332 (4)0.0799 (3)0.0355 (8)
N40.5586 (5)0.1292 (5)0.1755 (3)0.0398 (8)
O10.6727 (5)−0.1790 (4)0.3183 (3)0.0500 (8)
S10.10932 (16)0.35060 (17)0.16652 (9)0.0457 (3)
H20.161 (5)0.440 (6)−0.069 (4)0.069*
H10.640 (8)−0.123 (7)0.258 (2)0.069*
U11U22U33U12U13U23
Br10.0587 (3)0.0552 (3)0.0373 (3)−0.0031 (2)−0.0109 (2)−0.0079 (2)
C10.044 (2)0.037 (2)0.035 (2)−0.0072 (18)−0.0095 (18)−0.0040 (18)
C20.043 (2)0.033 (2)0.041 (2)−0.0098 (18)−0.0050 (18)−0.0098 (18)
C30.047 (3)0.047 (3)0.055 (3)−0.004 (2)−0.003 (2)−0.005 (2)
C40.038 (2)0.040 (2)0.036 (2)−0.0030 (18)−0.0052 (17)−0.0012 (18)
C50.0302 (19)0.041 (2)0.034 (2)−0.0083 (17)−0.0078 (16)0.0013 (18)
C60.0279 (19)0.033 (2)0.047 (2)0.0047 (16)−0.0057 (17)0.0024 (19)
C70.039 (2)0.036 (2)0.045 (2)−0.0042 (18)−0.0069 (19)0.0075 (19)
C80.035 (2)0.050 (3)0.036 (2)−0.0016 (19)−0.0069 (17)0.010 (2)
C90.0286 (19)0.040 (2)0.038 (2)−0.0015 (16)−0.0091 (16)−0.0059 (18)
C100.038 (2)0.033 (2)0.039 (2)0.0024 (17)−0.0083 (18)0.0067 (18)
N10.046 (2)0.046 (2)0.0337 (18)−0.0062 (17)−0.0059 (16)−0.0034 (16)
N20.0391 (19)0.0380 (19)0.0325 (18)−0.0021 (15)−0.0100 (15)−0.0007 (15)
N30.0396 (18)0.0323 (18)0.0345 (18)−0.0054 (15)−0.0119 (14)−0.0024 (14)
N40.0440 (19)0.0285 (17)0.0389 (19)0.0097 (14)−0.0155 (15)0.0086 (15)
O10.062 (2)0.0376 (17)0.0481 (19)−0.0034 (15)−0.0136 (16)−0.0005 (15)
S10.0458 (6)0.0541 (7)0.0325 (6)0.0015 (5)−0.0055 (4)0.0006 (5)
Br1—C91.898 (4)C5—C101.431 (5)
C1—N21.336 (5)C6—O11.356 (5)
C1—N31.375 (5)C6—C71.385 (6)
C1—S11.681 (4)C7—C81.373 (6)
C2—N11.312 (5)C7—H70.9300
C2—N31.381 (5)C8—C91.402 (6)
C2—C31.463 (6)C8—H80.9300
C3—H3A0.9600C9—C101.372 (5)
C3—H3B0.9600C10—H100.9300
C3—H3C0.9600N1—N21.370 (5)
C4—N41.285 (5)N2—H20.862 (19)
C4—C51.440 (5)N3—N41.409 (4)
C4—H40.9300O1—H10.821 (19)
C5—C61.383 (5)
N2—C1—N3102.6 (3)C8—C7—C6120.5 (4)
N2—C1—S1129.2 (3)C8—C7—H7119.7
N3—C1—S1128.2 (3)C6—C7—H7119.7
N1—C2—N3109.8 (4)C7—C8—C9119.9 (4)
N1—C2—C3126.3 (4)C7—C8—H8120.1
N3—C2—C3123.9 (4)C9—C8—H8120.1
C2—C3—H3A109.5C10—C9—C8120.8 (4)
C2—C3—H3B109.5C10—C9—Br1120.7 (3)
H3A—C3—H3B109.5C8—C9—Br1118.4 (3)
C2—C3—H3C109.5C9—C10—C5118.8 (4)
H3A—C3—H3C109.5C9—C10—H10120.6
H3B—C3—H3C109.5C5—C10—H10120.6
N4—C4—C5120.0 (4)C2—N1—N2104.2 (3)
N4—C4—H4120.0C1—N2—N1114.4 (3)
C5—C4—H4120.0C1—N2—H2123 (3)
C6—C5—C10119.7 (4)N1—N2—H2122 (3)
C6—C5—C4124.2 (4)C1—N3—C2109.0 (3)
C10—C5—C4116.0 (4)C1—N3—N4126.2 (3)
O1—C6—C5123.4 (4)C2—N3—N4124.1 (3)
O1—C6—C7116.3 (4)C4—N4—N3113.7 (3)
C5—C6—C7120.3 (4)C6—O1—H1109 (4)
N4—C4—C5—C6−5.4 (6)C3—C2—N1—N2179.5 (4)
N4—C4—C5—C10178.1 (4)N3—C1—N2—N10.2 (4)
C10—C5—C6—O1179.1 (3)S1—C1—N2—N1−178.5 (3)
C4—C5—C6—O12.6 (6)C2—N1—N2—C10.5 (4)
C10—C5—C6—C71.5 (6)N2—C1—N3—C2−0.7 (4)
C4—C5—C6—C7−174.9 (4)S1—C1—N3—C2178.0 (3)
O1—C6—C7—C8−179.0 (4)N2—C1—N3—N4−171.4 (3)
C5—C6—C7—C8−1.3 (6)S1—C1—N3—N47.3 (6)
C6—C7—C8—C90.0 (6)N1—C2—N3—C11.1 (4)
C7—C8—C9—C101.2 (6)C3—C2—N3—C1−179.3 (4)
C7—C8—C9—Br1−179.0 (3)N1—C2—N3—N4172.1 (3)
C8—C9—C10—C5−0.9 (6)C3—C2—N3—N4−8.4 (6)
Br1—C9—C10—C5179.2 (3)C5—C4—N4—N3176.5 (3)
C6—C5—C10—C9−0.4 (6)C1—N3—N4—C4−71.7 (5)
C4—C5—C10—C9176.3 (3)C2—N3—N4—C4118.9 (4)
N3—C2—N1—N2−0.9 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2···S1i0.862 (19)2.44 (2)3.295 (3)173 (5)
O1—H1···N40.821 (19)1.97 (4)2.676 (4)144 (5)
O1—H1···N1ii0.821 (19)2.69 (5)3.178 (5)120 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯S1i0.862 (19)2.44 (2)3.295 (3)173 (5)
O1—H1⋯N40.821 (19)1.97 (4)2.676 (4)144 (5)
O1—H1⋯N1ii0.821 (19)2.69 (5)3.178 (5)120 (5)

Symmetry codes: (i) ; (ii) .

  1 in total

1.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

  1 in total
  2 in total

1.  The crystal structures of three 3-methyl-1H-1,2,4-triazole-5-thio-nes, including a second polymorph of 4-[(E)-(5-bromo-2-hy-droxy-benzyl-idene)amino]-3-methyl-1H-1,2,4-triazole-5(4H)-thione and a redetermination of 4-amino-3-methyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Padmanabha S Manjula; Balladka K Sarojini; Hemmige S Yathirajan; Mehmet Akkurt; Cem Cüneyt Ersanlı; Christopher Glidewell
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-08-06

2.  3-Methyl-4-{(E)-[4-(methyl-sulfan-yl)benzyl-idene]amino}-1H-1,2,4-triazole-5(4H)-thione.

Authors:  B K Sarojini; P S Manjula; Gurumurthy Hegde; Dalbir Kour; Vivek K Gupta; Rajni Kant
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13
  2 in total

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