Literature DB >> 25309199

Crystal structure of 4-[(E)-(4-chloro-benzyl-idene)amino]-3-(2-methyl-benz-yl)-1H-1,2,4-triazole-5(4H)-thione.

B K Sarojini1, P S Manjula2, B Narayana1, Sumati Anthal3, Rajni Kant3.   

Abstract

In the title mol-ecule, C17H15ClN4S, the benzene rings form dihedral angles of 16.6 (1) and 77.2 (1)° with the triazole ring. The dihedral angle between the benzene rings is 86.6 (1)°. In the crystal, pairs of N-H⋯S hydrogen bonds form inversion dimers with graph-set notation R 2 (2)(8). Weak C-H⋯S hydrogen bonds link these dimers into layers parallel to (100). Weak intra-molecular C-H⋯S and C-H⋯N contacts are observed.

Entities:  

Keywords:  1,2,4-triazole; Schiff base; crystal structure; hydrogen bonding

Year:  2014        PMID: 25309199      PMCID: PMC4186062          DOI: 10.1107/S1600536814018352

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemistry of Schiff base compounds, see: Dubey & Vaid (1991 ▶); Yadav et al. (1994 ▶); Reddy & Lirgappa (1994 ▶); Wyrzykiewicz & Prukah (1998 ▶); Galic et al. (2001 ▶). For the biological activity of 1,2,4-triazole derivatives, see: Jones et al. (1965 ▶); Kane et al. (1988 ▶); Mullican et al. (1993 ▶); Cansiz et al. (2001 ▶). For the biological activity of sulfur- and nitro­gen-containing compounds, see: Malik et al. (2011 ▶); Wei & Bell (1982 ▶). For related structures, see: Ding et al. (2009 ▶); Vinduvahini et al. (2011 ▶); Almutairi et al. (2012 ▶); Sarojini et al. (2013 ▶, 2014a ▶,b ▶). For standard bond-lengths, see: Allen et al. (1987 ▶). For hydrogen-bond graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C17H15ClN4S M = 342.84 Monoclinic, a = 13.4821 (9) Å b = 6.8479 (4) Å c = 18.4895 (12) Å β = 100.443 (6)° V = 1678.75 (18) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur, Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.858, T max = 1.000 6947 measured reflections 3306 independent reflections 2252 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.115 S = 1.04 3306 reflections 213 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.24 e Å−3

Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶) and ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814018352/lh5724sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814018352/lh5724Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814018352/lh5724Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814018352/lh5724fig1.tif The mol­ecular structure with ellipsoids drawn at the 40% probability level. H atoms are shown as small spheres of arbitrary radii. Click here for additional data file. . DOI: 10.1107/S1600536814018352/lh5724fig2.tif A pair mol­ecules of the title compound. Dashed lines indicate N—H⋯S hydrogen bonds forming (8) graph set motifs linking the mol­ecules into dimers. Click here for additional data file. b . DOI: 10.1107/S1600536814018352/lh5724fig3.tif The packing arrangement of mol­ecules viewed along the b axis. Hydrogen bonds are shown as dashed lines. CCDC reference: 1018973 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H15ClN4SF(000) = 712
Mr = 342.84Dx = 1.356 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1855 reflections
a = 13.4821 (9) Åθ = 3.6–26.5°
b = 6.8479 (4) ŵ = 0.36 mm1
c = 18.4895 (12) ÅT = 293 K
β = 100.443 (6)°Block, white
V = 1678.75 (18) Å30.30 × 0.20 × 0.20 mm
Z = 4
Oxford Diffraction Xcalibur, Sapphire3 diffractometer3306 independent reflections
Radiation source: fine-focus sealed tube2252 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
Detector resolution: 16.1049 pixels mm-1θmax = 26.0°, θmin = 3.6°
ω scansh = −16→12
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −8→5
Tmin = 0.858, Tmax = 1.000l = −22→18
6947 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0402P)2 + 0.2834P] where P = (Fo2 + 2Fc2)/3
3306 reflections(Δ/σ)max < 0.001
213 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.24 e Å3
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.07980 (5)0.72738 (9)0.46649 (4)0.0604 (2)
Cl10.43301 (6)−0.35687 (10)0.54977 (5)0.0791 (3)
N20.11694 (13)0.6086 (2)0.61288 (11)0.0416 (5)
N10.17171 (13)0.4355 (2)0.61469 (11)0.0444 (5)
C60.27146 (17)0.0685 (3)0.61625 (13)0.0454 (6)
H60.24240.09610.65700.055*
C90.09068 (17)0.6762 (3)0.67729 (13)0.0450 (6)
C10.25988 (17)0.1987 (3)0.55810 (13)0.0468 (6)
N40.03338 (15)0.8286 (3)0.66436 (12)0.0576 (6)
C70.20400 (19)0.3820 (3)0.55848 (15)0.0550 (7)
H70.19240.45960.51650.066*
C40.36590 (18)−0.1416 (3)0.55312 (14)0.0491 (6)
C50.32542 (17)−0.1010 (3)0.61443 (14)0.0474 (6)
H50.3344−0.18680.65410.057*
N30.02267 (16)0.8556 (3)0.59013 (13)0.0569 (6)
C110.23908 (18)0.6491 (3)0.77823 (12)0.0459 (6)
C100.12992 (18)0.5931 (3)0.75064 (14)0.0516 (6)
H10A0.12440.45200.74810.062*
H10B0.08900.63910.78530.062*
C120.31449 (19)0.5143 (4)0.77442 (14)0.0549 (7)
H120.29720.38990.75620.066*
C80.07340 (16)0.7288 (3)0.55585 (14)0.0456 (6)
C30.3549 (2)−0.0174 (4)0.49465 (15)0.0663 (8)
H30.3826−0.04730.45340.080*
C160.2652 (2)0.8359 (4)0.80624 (13)0.0554 (7)
C140.4396 (2)0.7446 (5)0.82462 (17)0.0775 (9)
H140.50690.77770.84070.093*
C20.3021 (2)0.1532 (4)0.49789 (15)0.0699 (8)
H20.29480.23970.45850.084*
C170.1871 (2)0.9886 (4)0.81350 (16)0.0759 (9)
H17A0.21991.10300.83660.114*
H17B0.14120.93820.84300.114*
H17C0.15061.02210.76560.114*
C150.3658 (3)0.8780 (4)0.82831 (16)0.0738 (9)
H150.38421.00200.84640.089*
C130.4148 (2)0.5614 (5)0.79722 (15)0.0720 (8)
H130.46490.47010.79410.086*
H3'−0.0073 (19)0.954 (4)0.5690 (14)0.064 (8)*
U11U22U33U12U13U23
S10.0735 (5)0.0570 (4)0.0470 (4)0.0249 (3)0.0007 (3)−0.0027 (3)
Cl10.0901 (6)0.0569 (4)0.0945 (6)0.0351 (4)0.0281 (5)0.0062 (4)
N20.0369 (10)0.0382 (10)0.0481 (12)0.0069 (8)0.0032 (9)−0.0019 (9)
N10.0408 (11)0.0388 (10)0.0514 (13)0.0099 (8)0.0023 (10)−0.0040 (9)
C60.0512 (14)0.0440 (13)0.0430 (15)0.0035 (11)0.0138 (12)0.0008 (11)
C90.0403 (13)0.0465 (13)0.0502 (16)0.0032 (10)0.0135 (11)−0.0024 (11)
C10.0506 (14)0.0438 (13)0.0451 (15)0.0129 (10)0.0062 (12)0.0019 (11)
N40.0574 (13)0.0605 (13)0.0577 (15)0.0195 (10)0.0177 (11)0.0014 (11)
C70.0651 (17)0.0471 (14)0.0531 (17)0.0207 (12)0.0120 (14)0.0080 (12)
C40.0500 (14)0.0422 (13)0.0553 (16)0.0108 (11)0.0101 (12)−0.0024 (12)
C50.0526 (15)0.0406 (12)0.0486 (15)0.0067 (11)0.0079 (12)0.0093 (11)
N30.0616 (14)0.0550 (13)0.0536 (15)0.0255 (11)0.0095 (11)0.0014 (11)
C110.0556 (15)0.0528 (14)0.0308 (13)−0.0013 (11)0.0119 (11)0.0091 (11)
C100.0585 (16)0.0488 (13)0.0522 (16)−0.0001 (12)0.0223 (13)0.0064 (12)
C120.0590 (17)0.0611 (15)0.0430 (16)0.0058 (13)0.0051 (13)0.0030 (12)
C80.0397 (13)0.0430 (12)0.0517 (15)0.0075 (10)0.0021 (11)−0.0046 (11)
C30.090 (2)0.0651 (17)0.0493 (17)0.0296 (15)0.0280 (15)0.0052 (14)
C160.0769 (19)0.0574 (15)0.0338 (14)−0.0077 (14)0.0151 (13)0.0048 (12)
C140.063 (2)0.108 (3)0.057 (2)−0.0215 (19)−0.0024 (16)0.0029 (18)
C20.101 (2)0.0657 (17)0.0464 (17)0.0376 (16)0.0231 (16)0.0186 (14)
C170.115 (3)0.0588 (17)0.059 (2)0.0044 (16)0.0285 (18)−0.0072 (14)
C150.092 (2)0.076 (2)0.0499 (18)−0.0228 (18)0.0031 (17)−0.0016 (15)
C130.0611 (19)0.103 (2)0.0496 (18)0.0169 (17)0.0025 (15)0.0046 (16)
S1—C81.670 (3)C11—C121.384 (3)
Cl1—C41.736 (2)C11—C161.401 (3)
N2—C81.382 (3)C11—C101.517 (3)
N2—C91.382 (3)C10—H10A0.9700
N2—N11.394 (2)C10—H10B0.9700
N1—C71.252 (3)C12—C131.380 (4)
C6—C51.374 (3)C12—H120.9300
C6—C11.383 (3)C3—C21.375 (3)
C6—H60.9300C3—H30.9300
C9—N41.295 (3)C16—C151.375 (4)
C9—C101.477 (3)C16—C171.507 (4)
C1—C21.375 (3)C14—C151.362 (4)
C1—C71.465 (3)C14—C131.371 (4)
N4—N31.366 (3)C14—H140.9300
C7—H70.9300C2—H20.9300
C4—C31.363 (3)C17—H17A0.9600
C4—C51.373 (3)C17—H17B0.9600
C5—H50.9300C17—H17C0.9600
N3—C81.335 (3)C15—H150.9300
N3—H3'0.85 (2)C13—H130.9300
C8—N2—C9108.55 (18)C11—C10—H10B109.2
C8—N2—N1132.44 (19)H10A—C10—H10B107.9
C9—N2—N1118.78 (19)C13—C12—C11121.1 (3)
C7—N1—N2119.4 (2)C13—C12—H12119.4
C5—C6—C1120.7 (2)C11—C12—H12119.4
C5—C6—H6119.6N3—C8—N2102.0 (2)
C1—C6—H6119.6N3—C8—S1126.62 (18)
N4—C9—N2110.4 (2)N2—C8—S1131.34 (17)
N4—C9—C10125.6 (2)C4—C3—C2118.6 (2)
N2—C9—C10123.8 (2)C4—C3—H3120.7
C2—C1—C6118.6 (2)C2—C3—H3120.7
C2—C1—C7119.1 (2)C15—C16—C11118.0 (3)
C6—C1—C7122.3 (2)C15—C16—C17119.7 (3)
C9—N4—N3104.2 (2)C11—C16—C17122.3 (3)
N1—C7—C1120.7 (2)C15—C14—C13120.1 (3)
N1—C7—H7119.6C15—C14—H14120.0
C1—C7—H7119.6C13—C14—H14120.0
C3—C4—C5121.8 (2)C3—C2—C1121.4 (2)
C3—C4—Cl1119.0 (2)C3—C2—H2119.3
C5—C4—Cl1119.28 (19)C1—C2—H2119.3
C4—C5—C6118.9 (2)C16—C17—H17A109.5
C4—C5—H5120.6C16—C17—H17B109.5
C6—C5—H5120.6H17A—C17—H17B109.5
C8—N3—N4114.8 (2)C16—C17—H17C109.5
C8—N3—H3'123.0 (18)H17A—C17—H17C109.5
N4—N3—H3'121.7 (18)H17B—C17—H17C109.5
C12—C11—C16119.3 (2)C14—C15—C16122.4 (3)
C12—C11—C10119.4 (2)C14—C15—H15118.8
C16—C11—C10121.2 (2)C16—C15—H15118.8
C9—C10—C11112.06 (19)C14—C13—C12119.1 (3)
C9—C10—H10A109.2C14—C13—H13120.4
C11—C10—H10A109.2C12—C13—H13120.4
C9—C10—H10B109.2
C8—N2—N1—C712.7 (3)C10—C11—C12—C13178.3 (2)
C9—N2—N1—C7−173.4 (2)N4—N3—C8—N22.0 (3)
C8—N2—C9—N40.5 (3)N4—N3—C8—S1−177.43 (18)
N1—N2—C9—N4−174.75 (18)C9—N2—C8—N3−1.4 (2)
C8—N2—C9—C10−175.1 (2)N1—N2—C8—N3172.9 (2)
N1—N2—C9—C109.7 (3)C9—N2—C8—S1177.92 (18)
C5—C6—C1—C21.1 (4)N1—N2—C8—S1−7.7 (4)
C5—C6—C1—C7−179.2 (2)C5—C4—C3—C20.3 (4)
N2—C9—N4—N30.7 (3)Cl1—C4—C3—C2−179.7 (2)
C10—C9—N4—N3176.2 (2)C12—C11—C16—C150.6 (3)
N2—N1—C7—C1−178.63 (19)C10—C11—C16—C15−178.2 (2)
C2—C1—C7—N1−174.1 (3)C12—C11—C16—C17−178.7 (2)
C6—C1—C7—N16.1 (4)C10—C11—C16—C172.5 (3)
C3—C4—C5—C60.8 (4)C4—C3—C2—C1−0.7 (5)
Cl1—C4—C5—C6−179.26 (18)C6—C1—C2—C30.0 (4)
C1—C6—C5—C4−1.5 (4)C7—C1—C2—C3−179.7 (3)
C9—N4—N3—C8−1.7 (3)C13—C14—C15—C160.9 (5)
N4—C9—C10—C11−101.5 (3)C11—C16—C15—C14−0.8 (4)
N2—C9—C10—C1173.5 (3)C17—C16—C15—C14178.5 (3)
C12—C11—C10—C9−102.1 (2)C15—C14—C13—C12−0.7 (5)
C16—C11—C10—C976.6 (3)C11—C12—C13—C140.5 (4)
C16—C11—C12—C13−0.5 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3′···S1i0.84 (3)2.43 (3)3.261 (2)167 (2)
C17—H17B···S1ii0.962.813.710 (3)157
C17—H17C···N40.962.593.321 (4)134
C7—H7···S10.932.453.203 (2)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3′⋯S1i 0.84 (3)2.43 (3)3.261 (2)167 (2)
C17—H17B⋯S1ii 0.962.813.710 (3)157
C17—H17C⋯N40.962.593.321 (4)134
C7—H7⋯S10.932.453.203 (2)138

Symmetry codes: (i) ; (ii) .

  9 in total

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Authors:  George M Sheldrick
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Authors:  J M Kane; M W Dudley; S M Sorensen; F P Miller
Journal:  J Med Chem       Date:  1988-06       Impact factor: 7.446

3.  Design of 5-(3,5-di-tert-butyl-4-hydroxyphenyl)-1,3,4-thiadiazoles, -1,3,4-oxadiazoles, and -1,2,4-triazoles as orally-active, nonulcerogenic antiinflammatory agents.

Authors:  M D Mullican; M W Wilson; D T Connor; C R Kostlan; D J Schrier; R D Dyer
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4.  3-(Adamantan-1-yl)-4-(prop-2-en-1-yl)-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Maha S Almutairi; Mona M Al-Shehri; Ali A El-Emam; Seik Weng Ng; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-10

5.  3-[2-(2,6-Dichloro-anilino)benz-yl]-4-[(4-meth-oxy-benzyl-idene)amino]-1H-1,2,4-triazole-5(4H)-thione.

Authors:  M Vinduvahini; K R Roopashree; Suman Bhattacharya; K Mohan Krishna; Venkatesh B Devaru
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-31

6.  3-Methyl-4-{(E)-[4-(methyl-sulfan-yl)benzyl-idene]amino}-1H-1,2,4-triazole-5(4H)-thione.

Authors:  B K Sarojini; P S Manjula; Gurumurthy Hegde; Dalbir Kour; Vivek K Gupta; Rajni Kant
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

8.  4-[(E)-(4-Chloro-benzyl-idene)amino]-3-methyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  B K Sarojini; P S Manjula; Manpreet Kaur; Brian J Anderson; Jerry P Jasinski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-14

9.  4-[(E)-(4-Hy-droxy-benzyl-idene)amino]-3-methyl-1H-1,2,4-triazole-5(4H)-thione.

Authors:  Balladka K Sarojini; Padmanabha S Manjula; B Narayana; Jerry P Jasinski
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-31
  9 in total

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