Literature DB >> 23722210

CLARITY for mapping the nervous system.

Kwanghun Chung1, Karl Deisseroth.   

Abstract

With potential relevance for brain-mapping work, hydrogel-based structures can now be built from within biological tissue to allow subsequent removal of lipids without mechanical disassembly of the tissue. This process creates a tissue-hydrogel hybrid that is physically stable, that preserves fine structure, proteins and nucleic acids, and that is permeable to both visible-spectrum photons and exogenous macromolecules. Here we highlight relevant challenges and opportunities of this approach, especially with regard to integration with complementary methodologies for brain-mapping studies.

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Year:  2013        PMID: 23722210     DOI: 10.1038/nmeth.2481

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  47 in total

1.  Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy.

Authors:  Raju Tomer; Khaled Khairy; Fernando Amat; Philipp J Keller
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

2.  Brain-wide neuronal dynamics during motor adaptation in zebrafish.

Authors:  Misha B Ahrens; Jennifer M Li; Michael B Orger; Drew N Robson; Alexander F Schier; Florian Engert; Ruben Portugues
Journal:  Nature       Date:  2012-05-09       Impact factor: 49.962

Review 3.  Deep tissue two-photon microscopy.

Authors:  Fritjof Helmchen; Winfried Denk
Journal:  Nat Methods       Date:  2005-12       Impact factor: 28.547

4.  Retrograde neuronal tracing with a deletion-mutant rabies virus.

Authors:  Ian R Wickersham; Stefan Finke; Karl-Klaus Conzelmann; Edward M Callaway
Journal:  Nat Methods       Date:  2006-12-10       Impact factor: 28.547

5.  Functional clustering of neurons in motor cortex determined by cellular resolution imaging in awake behaving mice.

Authors:  Daniel A Dombeck; Michael S Graziano; David W Tank
Journal:  J Neurosci       Date:  2009-11-04       Impact factor: 6.167

6.  Surface cryoplaning. A technique for clinical anatomical correlations.

Authors:  W Rauschning
Journal:  Ups J Med Sci       Date:  1986       Impact factor: 2.384

7.  Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

Authors:  Hans-Ulrich Dodt; Ulrich Leischner; Anja Schierloh; Nina Jährling; Christoph Peter Mauch; Katrin Deininger; Jan Michael Deussing; Matthias Eder; Walter Zieglgänsberger; Klaus Becker
Journal:  Nat Methods       Date:  2007-03-25       Impact factor: 28.547

8.  Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy.

Authors:  Philipp J Keller; Annette D Schmidt; Anthony Santella; Khaled Khairy; Zhirong Bao; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Nat Methods       Date:  2010-07-04       Impact factor: 28.547

9.  Long-term dynamics of CA1 hippocampal place codes.

Authors:  Yaniv Ziv; Laurie D Burns; Eric D Cocker; Elizabeth O Hamel; Kunal K Ghosh; Lacey J Kitch; Abbas El Gamal; Mark J Schnitzer
Journal:  Nat Neurosci       Date:  2013-02-10       Impact factor: 24.884

10.  Permanent genetic access to transiently active neurons via TRAP: targeted recombination in active populations.

Authors:  Casey J Guenthner; Kazunari Miyamichi; Helen H Yang; H Craig Heller; Liqun Luo
Journal:  Neuron       Date:  2013-06-05       Impact factor: 17.173

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  281 in total

1.  Stochastic electrotransport selectively enhances the transport of highly electromobile molecules.

Authors:  Sung-Yon Kim; Jae Hun Cho; Evan Murray; Naveed Bakh; Heejin Choi; Kimberly Ohn; Luzdary Ruelas; Austin Hubbert; Meg McCue; Sara L Vassallo; Philipp J Keller; Kwanghun Chung
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

2.  Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.

Authors:  Ken Y Chan; Nicholas C Flytzanis; Bin Yang; Jennifer B Treweek; Benjamin E Deverman; Alon Greenbaum; Antti Lignell; Cheng Xiao; Long Cai; Mark S Ladinsky; Pamela J Bjorkman; Charless C Fowlkes; Viviana Gradinaru
Journal:  Nat Protoc       Date:  2015-10-22       Impact factor: 13.491

3.  Ultramicroscopy: development and outlook.

Authors:  Hans-Ulrich Dodt; Saiedeh Saghafi; Klaus Becker; Nina Jährling; Christian Hahn; Marko Pende; Martina Wanis; Axel Niendorf
Journal:  Neurophotonics       Date:  2015-11-09       Impact factor: 3.593

Review 4.  Molecular Mechanisms of the Memory Trace.

Authors:  Arun Asok; Félix Leroy; Joseph B Rayman; Eric R Kandel
Journal:  Trends Neurosci       Date:  2018-10-31       Impact factor: 13.837

Review 5.  Extracting structural and functional features of widely distributed biological circuits with single cell resolution via tissue clearing and delivery vectors.

Authors:  Jennifer Brooke Treweek; Viviana Gradinaru
Journal:  Curr Opin Biotechnol       Date:  2016-07-06       Impact factor: 9.740

Review 6.  Molecular neuroanatomy: a generation of progress.

Authors:  Jonathan D Pollock; Da-Yu Wu; John S Satterlee
Journal:  Trends Neurosci       Date:  2013-12-31       Impact factor: 13.837

7.  Neuroscience: solving the brain.

Authors:  Alison Abbott
Journal:  Nature       Date:  2013-07-18       Impact factor: 49.962

8.  Volumetric imaging and quantification of cytoarchitecture and myeloarchitecture with intrinsic scattering contrast.

Authors:  Conor Leahy; Harsha Radhakrishnan; Vivek J Srinivasan
Journal:  Biomed Opt Express       Date:  2013-09-05       Impact factor: 3.732

9.  Fabrication of 3-D Reconstituted Organoid Arrays by DNA-Programmed Assembly of Cells (DPAC).

Authors:  Michael E Todhunter; Robert J Weber; Justin Farlow; Noel Y Jee; Alec E Cerchiari; Zev J Gartner
Journal:  Curr Protoc Chem Biol       Date:  2016-09-13

Review 10.  Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience.

Authors:  Robert A McDougal; Thomas M Morse; Ted Carnevale; Luis Marenco; Rixin Wang; Michele Migliore; Perry L Miller; Gordon M Shepherd; Michael L Hines
Journal:  J Comput Neurosci       Date:  2016-09-15       Impact factor: 1.621

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