Literature DB >> 26730396

Ultramicroscopy: development and outlook.

Hans-Ulrich Dodt1, Saiedeh Saghafi1, Klaus Becker1, Nina Jährling1, Christian Hahn1, Marko Pende1, Martina Wanis1, Axel Niendorf2.   

Abstract

We present an overview of the ultramicroscopy technique we developed. Starting from developments 100 years ago, we designed a light sheet microscope and a chemical clearing to image complete mouse brains. Fluorescence of green fluorescent protein (GFP)-labeled neurons in mouse brains could be preserved with our 3DISCO clearing and high-resolution three-dimensional (3-D) recordings were obtained. Ultramicroscopy was also used to image whole mouse embryos and flies. We improved the optical sectioning of our light sheet microscope by generating longer and thinner light sheets with aspheric optics. To obtain high-resolution images, we corrected available air microscope objectives for clearing solutions with high refractive index. We discuss how eventually super resolution could be realized in light sheet microscopy by applying stimulated emission depletion technology. Also the imaging of brain function by recording of mouse brains expressing cfos-GFP is discussed. Finally, we show the first 3-D recordings of human breast cancer with light sheet microscopy as application in medical diagnostics.

Entities:  

Keywords:  brain clearing; light sheet; objective correction; three-dimensional brain imaging; tumor clearing; ultramicroscopy

Year:  2015        PMID: 26730396      PMCID: PMC4696521          DOI: 10.1117/1.NPh.2.4.041407

Source DB:  PubMed          Journal:  Neurophotonics        ISSN: 2329-423X            Impact factor:   3.593


  32 in total

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Authors:  Fritjof Helmchen; Winfried Denk
Journal:  Nat Methods       Date:  2005-12       Impact factor: 28.547

Review 2.  Fluorescent protein tools for studying protein dynamics in living cells: a review.

Authors:  Richard N Day; Fred Schaufele
Journal:  J Biomed Opt       Date:  2008 May-Jun       Impact factor: 3.170

3.  Mapping social behavior-induced brain activation at cellular resolution in the mouse.

Authors:  Yongsoo Kim; Kannan Umadevi Venkataraju; Kith Pradhan; Carolin Mende; Julian Taranda; Srinivas C Turaga; Ignacio Arganda-Carreras; Lydia Ng; Michael J Hawrylycz; Kathleen S Rockland; H Sebastian Seung; Pavel Osten
Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

4.  Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

Authors:  Hans-Ulrich Dodt; Ulrich Leischner; Anja Schierloh; Nina Jährling; Christoph Peter Mauch; Katrin Deininger; Jan Michael Deussing; Matthias Eder; Walter Zieglgänsberger; Klaus Becker
Journal:  Nat Methods       Date:  2007-03-25       Impact factor: 28.547

5.  Morphologic phenotyping with MR microscopy: the visible mouse.

Authors:  G Allan Johnson; Gary P Cofer; Sally L Gewalt; Laurence W Hedlund
Journal:  Radiology       Date:  2002-03       Impact factor: 11.105

6.  Ultramicroscopy: 3D reconstruction of large microscopical specimens.

Authors:  K Becker; N Jährling; E R Kramer; F Schnorrer; H-U Dodt
Journal:  J Biophotonics       Date:  2008-03       Impact factor: 3.207

7.  Optical projection tomography as a tool for 3D microscopy and gene expression studies.

Authors:  James Sharpe; Ulf Ahlgren; Paul Perry; Bill Hill; Allyson Ross; Jacob Hecksher-Sørensen; Richard Baldock; Duncan Davidson
Journal:  Science       Date:  2002-04-19       Impact factor: 47.728

8.  3D-ultramicroscopy utilizing aspheric optics.

Authors:  Saiedeh Saghafi; Klaus Becker; Christian Hahn; Hans-Ulrich Dodt
Journal:  J Biophotonics       Date:  2013-07-17       Impact factor: 3.207

9.  Resolution of ultramicroscopy and field of view analysis.

Authors:  Ulrich Leischner; Walter Zieglgänsberger; Hans-Ulrich Dodt
Journal:  PLoS One       Date:  2009-06-03       Impact factor: 3.240

10.  Chemical reactivation of quenched fluorescent protein molecules enables resin-embedded fluorescence microimaging.

Authors:  Hanqing Xiong; Zhenqiao Zhou; Mingqiang Zhu; Xiaohua Lv; Anan Li; Shiwei Li; Longhui Li; Tao Yang; Siming Wang; Zhongqin Yang; Tonghui Xu; Qingming Luo; Hui Gong; Shaoqun Zeng
Journal:  Nat Commun       Date:  2014-06-02       Impact factor: 14.919

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  8 in total

Review 1.  Tutorial: practical considerations for tissue clearing and imaging.

Authors:  Kurt R Weiss; Fabian F Voigt; Douglas P Shepherd; Jan Huisken
Journal:  Nat Protoc       Date:  2021-05-21       Impact factor: 13.491

2.  Integrating light-sheet imaging with virtual reality to recapitulate developmental cardiac mechanics.

Authors:  Yichen Ding; Arash Abiri; Parinaz Abiri; Shuoran Li; Chih-Chiang Chang; Kyung In Baek; Jeffrey J Hsu; Elias Sideris; Yilei Li; Juhyun Lee; Tatiana Segura; Thao P Nguyen; Alexander Bui; René R Sevag Packard; Peng Fei; Tzung K Hsiai
Journal:  JCI Insight       Date:  2017-11-16

Review 3.  Light-Sheet Imaging to Elucidate Cardiovascular Injury and Repair.

Authors:  Yichen Ding; Juhyun Lee; Jeffrey J Hsu; Chih-Chiang Chang; Kyung In Baek; Sara Ranjbarvaziri; Reza Ardehali; René R Sevag Packard; Tzung K Hsiai
Journal:  Curr Cardiol Rep       Date:  2018-03-24       Impact factor: 2.931

Review 4.  Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy.

Authors:  Hiroki R Ueda; Hans-Ulrich Dodt; Pavel Osten; Michael N Economo; Jayaram Chandrashekar; Philipp J Keller
Journal:  Neuron       Date:  2020-05-06       Impact factor: 17.173

Review 5.  Multiscale light-sheet for rapid imaging of cardiopulmonary system.

Authors:  Yichen Ding; Jianguo Ma; Adam D Langenbacher; Kyung In Baek; Juhyun Lee; Chih-Chiang Chang; Jeffrey J Hsu; Rajan P Kulkarni; John Belperio; Wei Shi; Sara Ranjbarvaziri; Reza Ardehali; Yin Tintut; Linda L Demer; Jau-Nian Chen; Peng Fei; René R Sevag Packard; Tzung K Hsiai
Journal:  JCI Insight       Date:  2018-08-23

6.  Enhancement of image quality and imaging depth with Airy light-sheet microscopy in cleared and non-cleared neural tissue.

Authors:  Jonathan Nylk; Kaley McCluskey; Sanya Aggarwal; Javier A Tello; Kishan Dholakia
Journal:  Biomed Opt Express       Date:  2016-09-14       Impact factor: 3.732

7.  Multimode fibre based imaging for optically cleared samples.

Authors:  Ivan Gusachenko; Jonathan Nylk; Javier A Tello; Kishan Dholakia
Journal:  Biomed Opt Express       Date:  2017-10-23       Impact factor: 3.732

8.  Hypoglossal Nerve Abnormalities as Biomarkers for Central Nervous System Defects in Mouse Lines Producing Embryonically Lethal Offspring.

Authors:  Lukas F Reissig; Atieh Seyedian Moghaddam; Fabrice Prin; Robert Wilson; Antonella Galli; Catherine Tudor; Jaqueline K White; Stefan H Geyer; Timothy J Mohun; Wolfgang J Weninger
Journal:  Front Neuroanat       Date:  2021-01-28       Impact factor: 3.856

  8 in total

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