Literature DB >> 23711105

Genotyping-by-sequencing in ecological and conservation genomics.

Shawn R Narum, C Alex Buerkle, John W Davey, Michael R Miller, Paul A Hohenlohe.   

Abstract

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Year:  2013        PMID： 23711105      PMCID： PMC3935057          DOI： 10.1111/mec.12350

Source DB:  PubMed          Journal:  Mol Ecol        ISSN： 0962-1083            Impact factor:   6.185


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  48 in total

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Authors:  Jessica Stapley; Julia Reger; Philine G D Feulner; Carole Smadja; Juan Galindo; Robert Ekblom; Clair Bennison; Alexander D Ball; Andrew P Beckerman; Jon Slate
Journal:  Trends Ecol Evol       Date:  2010-10-16       Impact factor: 17.712

2.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits.

Authors:  Lucia A Hindorff; Praveen Sethupathy; Heather A Junkins; Erin M Ramos; Jayashri P Mehta; Francis S Collins; Teri A Manolio
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-27       Impact factor: 11.205

Review 3.  Genome-wide genetic marker discovery and genotyping using next-generation sequencing.

Authors:  John W Davey; Paul A Hohenlohe; Paul D Etter; Jason Q Boone; Julian M Catchen; Mark L Blaxter
Journal:  Nat Rev Genet       Date:  2011-06-17       Impact factor: 53.242

4.  Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout.

Authors:  Paul A Hohenlohe; Stephen J Amish; Julian M Catchen; Fred W Allendorf; Gordon Luikart
Journal:  Mol Ecol Resour       Date:  2011-03       Impact factor: 7.090

5.  Genomic evidence for the parallel evolution of coastal forms in the Senecio lautus complex.

Authors:  Federico Roda; Luke Ambrose; Gregory M Walter; Huanle L Liu; Andrea Schaul; Andrew Lowe; Pieter B Pelser; Peter Prentis; Loren H Rieseberg; Daniel Ortiz-Barrientos
Journal:  Mol Ecol       Date:  2013-05-25       Impact factor: 6.185

6.  Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation.

Authors:  Pierre De Wit; Stephen R Palumbi
Journal:  Mol Ecol       Date:  2012-10-29       Impact factor: 6.185

7.  The effect of RAD allele dropout on the estimation of genetic variation within and between populations.

Authors:  Mathieu Gautier; Karim Gharbi; Timothee Cezard; Julien Foucaud; Carole Kerdelhué; Pierre Pudlo; Jean-Marie Cornuet; Arnaud Estoup
Journal:  Mol Ecol       Date:  2012-10-30       Impact factor: 6.185

8.  A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species.

Authors:  Robert J Elshire; Jeffrey C Glaubitz; Qi Sun; Jesse A Poland; Ken Kawamoto; Edward S Buckler; Sharon E Mitchell
Journal:  PLoS One       Date:  2011-05-04       Impact factor: 3.240

9.  Efficient exact maximum a posteriori computation for bayesian SNP genotyping in polyploids.

Authors:  Oliver Serang; Marcelo Mollinari; Antonio Augusto Franco Garcia
Journal:  PLoS One       Date:  2012-02-17       Impact factor: 3.240

10.  RAD-Seq derived markers flank the shell colour and banding loci of the Cepaea nemoralis supergene.

Authors:  Paul M Richards; M Maureen Liu; Natalie Lowe; John W Davey; Mark L Blaxter; Angus Davison
Journal:  Mol Ecol       Date:  2013-03-15       Impact factor: 6.185
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  139 in total

1.  RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping.

Authors:  Omar A Ali; Sean M O'Rourke; Stephen J Amish; Mariah H Meek; Gordon Luikart; Carson Jeffres; Michael R Miller
Journal:  Genetics       Date:  2015-12-29       Impact factor: 4.562

2.  DNA fingerprinting in botany: past, present, future.

Authors:  Hilde Nybom; Kurt Weising; Björn Rotter
Journal:  Investig Genet       Date:  2014-01-03

3.  A linkage disequilibrium perspective on the genetic mosaic of speciation in two hybridizing Mediterranean white oaks.

Authors:  P G Goicoechea; A Herrán; J Durand; C Bodénès; C Plomion; A Kremer
Journal:  Heredity (Edinb)       Date:  2014-12-17       Impact factor: 3.821

4.  Vive la résistance: genome-wide selection against introduced alleles in invasive hybrid zones.

Authors:  Ryan P Kovach; Brian K Hand; Paul A Hohenlohe; Ted F Cosart; Matthew C Boyer; Helen H Neville; Clint C Muhlfeld; Stephen J Amish; Kellie Carim; Shawn R Narum; Winsor H Lowe; Fred W Allendorf; Gordon Luikart
Journal:  Proc Biol Sci       Date:  2016-11-30       Impact factor: 5.349

5.  LD-annot: A Bioinformatics Tool to Automatically Provide Candidate SNPs With Annotations for Genetically Linked Genes.

Authors:  Julien Prunier; Audrey Lemaçon; Alexandre Bastien; Mohsen Jafarikia; Ilga Porth; Claude Robert; Arnaud Droit
Journal:  Front Genet       Date:  2019-11-26       Impact factor: 4.599

6.  Adaptive gains through repeated gene loss: parallel evolution of cyanogenesis polymorphisms in the genus Trifolium (Fabaceae).

Authors:  Kenneth M Olsen; Nicholas J Kooyers; Linda L Small
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-08-05       Impact factor: 6.237

7.  Using Mendelian inheritance to improve high-throughput SNP discovery.

Authors:  Nancy Chen; Cristopher V Van Hout; Srikanth Gottipati; Andrew G Clark
Journal:  Genetics       Date:  2014-09-05       Impact factor: 4.562

8.  Origin of a cryptic lineage in a threatened reptile through isolation and historical hybridization.

Authors:  M G Sovic; A C Fries; H L Gibbs
Journal:  Heredity (Edinb)       Date:  2016-07-27       Impact factor: 3.821

9.  Ecological characteristics and in situ genetic associations for yield-component traits of wild Miscanthus from eastern Russia.

Authors:  Lindsay V Clark; Elena Dzyubenko; Nikolay Dzyubenko; Larisa Bagmet; Andrey Sabitov; Pavel Chebukin; Douglas A Johnson; Jens Bonderup Kjeldsen; Karen Koefoed Petersen; Uffe Jørgensen; Ji Hye Yoo; Kweon Heo; Chang Yeon Yu; Hua Zhao; Xiaoli Jin; Junhua Peng; Toshihiko Yamada; Erik J Sacks
Journal:  Ann Bot       Date:  2016-10-01       Impact factor: 4.357

10.  Capturing Darwin's dream.

Authors:  Travis C Glenn; Brant C Faircloth
Journal:  Mol Ecol Resour       Date:  2016-09       Impact factor: 7.090
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