Literature DB >> 27454358

Capturing Darwin's dream.

Travis C Glenn1, Brant C Faircloth2.   

Abstract

Evolutionary biologists from Darwin forward have dreamed of having data that would elucidate our understanding of evolutionary history and the diversity of life. Sequence capture is a relatively old DNA technology, but its use is growing rapidly due to advances in (i) massively parallel DNA sequencing approaches and instruments, (ii) massively parallel bait construction, (iii) methods to identify target regions and (iv) sample preparation. We give a little historical context to these developments, summarize some of the important advances reported in this special issue and point to further advances that can be made to help fulfill Darwin's dream.
© 2016 John Wiley & Sons Ltd.

Entities:  

Keywords:  Illumina; biotinylated baits; massively parallel sequencing; next-generation sequencing; sequence capture; target enrichment

Mesh:

Substances:

Year:  2016        PMID: 27454358      PMCID: PMC5318190          DOI: 10.1111/1755-0998.12574

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  83 in total

1.  Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites.

Authors:  M B Hamilton; E L Pincus; A Di Fiore; R C Fleischer
Journal:  Biotechniques       Date:  1999-09       Impact factor: 1.993

Review 2.  Strategies for microsatellite isolation: a review.

Authors:  L Zane; L Bargelloni; T Patarnello
Journal:  Mol Ecol       Date:  2002-01       Impact factor: 6.185

3.  Multiplexed genotyping with sequence-tagged molecular inversion probes.

Authors:  Paul Hardenbol; Johan Banér; Maneesh Jain; Mats Nilsson; Eugeni A Namsaraev; George A Karlin-Neumann; Hossein Fakhrai-Rad; Mostafa Ronaghi; Thomas D Willis; Ulf Landegren; Ronald W Davis
Journal:  Nat Biotechnol       Date:  2003-05-05       Impact factor: 54.908

4.  Molecular structure of deoxypentose nucleic acids.

Authors:  M H F WILKINS; A R STOKES; H R WILSON
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

5.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

6.  Molecular configuration in sodium thymonucleate.

Authors:  R E FRANKLIN; R G GOSLING
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

7.  Ultraconserved elements in the human genome.

Authors:  Gill Bejerano; Michael Pheasant; Igor Makunin; Stuart Stephen; W James Kent; John S Mattick; David Haussler
Journal:  Science       Date:  2004-05-06       Impact factor: 47.728

Review 8.  Microsatellites: simple sequences with complex evolution.

Authors:  Hans Ellegren
Journal:  Nat Rev Genet       Date:  2004-06       Impact factor: 53.242

9.  Isolating microsatellite DNA loci.

Authors:  Travis C Glenn; Nancy A Schable
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

10.  Construction of small-insert genomic DNA libraries highly enriched for microsatellite repeat sequences.

Authors:  E A Ostrander; P M Jong; J Rine; G Duyk
Journal:  Proc Natl Acad Sci U S A       Date:  1992-04-15       Impact factor: 11.205

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  7 in total

1.  Amplicon genome fishing (AGF): a rapid and efficient method for sequencing target cis-regulatory regions in nonmodel organisms.

Authors:  HanMei Gu; Peng Zhang; ManHao Xu; Dan Liang
Journal:  Mol Genet Genomics       Date:  2021-04-02       Impact factor: 3.291

2.  Improved Microbial Community Characterization of 16S rRNA via Metagenome Hybridization Capture Enrichment.

Authors:  Megan S Beaudry; Jincheng Wang; Troy J Kieran; Jesse Thomas; Natalia J Bayona-Vásquez; Bei Gao; Alison Devault; Brian Brunelle; Kun Lu; Jia-Sheng Wang; Olin E Rhodes; Travis C Glenn
Journal:  Front Microbiol       Date:  2021-04-27       Impact factor: 5.640

3.  Adapterama III: Quadruple-indexed, double/triple-enzyme RADseq libraries (2RAD/3RAD).

Authors:  Natalia J Bayona-Vásquez; Travis C Glenn; Troy J Kieran; Todd W Pierson; Sandra L Hoffberg; Peter A Scott; Kerin E Bentley; John W Finger; Swarnali Louha; Nicholas Troendle; Pindaro Diaz-Jaimes; Rodney Mauricio; Brant C Faircloth
Journal:  PeerJ       Date:  2019-10-11       Impact factor: 2.984

4.  Ultraconserved element (UCE) probe set design: Base genome and initial design parameters critical for optimization.

Authors:  Grey T Gustafson; Alana Alexander; John S Sproul; James M Pflug; David R Maddison; Andrew E Z Short
Journal:  Ecol Evol       Date:  2019-06-11       Impact factor: 2.912

5.  Fishing for DNA? Designing baits for population genetics in target enrichment experiments: Guidelines, considerations and the new tool supeRbaits.

Authors:  Belén Jiménez-Mena; Hugo Flávio; Romina Henriques; Alice Manuzzi; Miguel Ramos; Dorte Meldrup; Janette Edson; Snaebjörn Pálsson; Guðbjörg Ásta Ólafsdóttir; Jennifer R Ovenden; Einar Eg Nielsen
Journal:  Mol Ecol Resour       Date:  2022-03-03       Impact factor: 8.678

6.  Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses.

Authors:  Jacob D Washburn; James C Schnable; Gavin C Conant; Thomas P Brutnell; Ying Shao; Yang Zhang; Martha Ludwig; Gerrit Davidse; J Chris Pires
Journal:  Sci Rep       Date:  2017-10-19       Impact factor: 4.379

7.  Novel genomic resources for shelled pteropods: a draft genome and target capture probes for Limacina bulimoides, tested for cross-species relevance.

Authors:  Le Qin Choo; Thijs M P Bal; Marvin Choquet; Irina Smolina; Paula Ramos-Silva; Ferdinand Marlétaz; Martina Kopp; Galice Hoarau; Katja T C A Peijnenburg
Journal:  BMC Genomics       Date:  2020-01-03       Impact factor: 3.969

  7 in total

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