Literature DB >> 20952088

Adaptation genomics: the next generation.

Jessica Stapley1, Julia Reger, Philine G D Feulner, Carole Smadja, Juan Galindo, Robert Ekblom, Clair Bennison, Alexander D Ball, Andrew P Beckerman, Jon Slate.   

Abstract

Understanding the genetics of how organisms adapt to changing environments is a fundamental topic in modern evolutionary ecology. The field is currently progressing rapidly because of advances in genomics technologies, especially DNA sequencing. The aim of this review is to first briefly summarise how next generation sequencing (NGS) has transformed our ability to identify the genes underpinning adaptation. We then demonstrate how the application of these genomic tools to ecological model species means that we can start addressing some of the questions that have puzzled ecological geneticists for decades such as: How many genes are involved in adaptation? What types of genetic variation are responsible for adaptation? Does adaptation utilise pre-existing genetic variation or does it require new mutations to arise following an environmental change?
Copyright © 2010 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2010        PMID: 20952088     DOI: 10.1016/j.tree.2010.09.002

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  188 in total

1.  From adaptation to molecular evolution.

Authors:  L-M Chevin; A P Beckerman
Journal:  Heredity (Edinb)       Date:  2011-11-02       Impact factor: 3.821

Review 2.  Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow.

Authors:  Sara Via
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-02-05       Impact factor: 6.237

3.  Novel tools for an old lineage: Population genomics for cycads.

Authors:  Angelica Cibrián-Jaramillo; Thomas E Marler
Journal:  Commun Integr Biol       Date:  2011-07-01

Review 4.  Molecular spandrels: tests of adaptation at the genetic level.

Authors:  Rowan D H Barrett; Hopi E Hoekstra
Journal:  Nat Rev Genet       Date:  2011-10-18       Impact factor: 53.242

5.  The possibility of de novo assembly of the genome and population genomics of the mangrove rivulus, Kryptolebias marmoratus.

Authors:  Joanna L Kelley; Muh-Ching Yee; Clarence Lee; Elizabeth Levandowsky; Minita Shah; Timothy Harkins; Ryan L Earley; Carlos D Bustamante
Journal:  Integr Comp Biol       Date:  2012-06-21       Impact factor: 3.326

6.  Harnessing genomics for delineating conservation units.

Authors:  W Chris Funk; John K McKay; Paul A Hohenlohe; Fred W Allendorf
Journal:  Trends Ecol Evol       Date:  2012-06-21       Impact factor: 17.712

7.  Evolution of stickleback in 50 years on earthquake-uplifted islands.

Authors:  Emily A Lescak; Susan L Bassham; Julian Catchen; Ofer Gelmond; Mary L Sherbick; Frank A von Hippel; William A Cresko
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-14       Impact factor: 11.205

8.  A genome-wide scan study identifies a single nucleotide substitution in ASIP associated with white versus non-white coat-colour variation in sheep (Ovis aries).

Authors:  M-H Li; T Tiirikka; J Kantanen
Journal:  Heredity (Edinb)       Date:  2013-09-11       Impact factor: 3.821

Review 9.  Ancient population genomics and the study of evolution.

Authors:  M Parks; S Subramanian; C Baroni; M C Salvatore; G Zhang; C D Millar; D M Lambert
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

Review 10.  Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions.

Authors:  Sean Hoban; Joanna L Kelley; Katie E Lotterhos; Michael F Antolin; Gideon Bradburd; David B Lowry; Mary L Poss; Laura K Reed; Andrew Storfer; Michael C Whitlock
Journal:  Am Nat       Date:  2016-08-15       Impact factor: 3.926

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