Literature DB >> 23705677

Correcting brain-wide correlation differences in resting-state FMRI.

Ziad S Saad1, Richard C Reynolds, Hang Joon Jo, Stephen J Gotts, Gang Chen, Alex Martin, Robert W Cox.   

Abstract

Brain function in "resting" state has been extensively studied with functional magnetic resonance imaging (FMRI). However, drawing valid inferences, particularly for group comparisons, is fraught with pitfalls. Differing levels of brain-wide correlations can confound group comparisons. Global signal regression (GSReg) attempts to reduce this confound and is commonly used, even though it differentially biases correlations over brain regions, potentially leading to false group differences. We propose to use average brain-wide correlations as a measure of global correlation (GCOR), and examine the circumstances under which it can be used to identify or correct for differences in global fluctuations. In the process, we show the bias induced by GSReg to be a function only of the data's covariance matrix, and use simulations to compare corrections with GCOR as covariate to GSReg under various scenarios. We find that unlike GSReg, GCOR is a conservative approach that can reduce global variations, while avoiding the introduction of false significant differences, as GSReg can. However, as with GSReg, one cannot escape the interaction effect between the grouping variable and GCOR covariate on effect size. While GCOR is a complementary measure for resting state-FMRI applicable to legacy data, it is a lesser substitute for proper level-I denoising. We also assess the applicability of GCOR to empirical data with motion-based subject grouping and compare group differences to those using GSReg. We find that, while GCOR reduced correlation differences between high and low movers, it is doubtful that motion was the sole driver behind the differences in the first place.

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Mesh:

Year:  2013        PMID: 23705677      PMCID: PMC3749702          DOI: 10.1089/brain.2013.0156

Source DB:  PubMed          Journal:  Brain Connect        ISSN: 2158-0014


  47 in total

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Journal:  Neuroimage       Date:  2002-10       Impact factor: 6.556

2.  The respiration response function: the temporal dynamics of fMRI signal fluctuations related to changes in respiration.

Authors:  Rasmus M Birn; Monica A Smith; Tyler B Jones; Peter A Bandettini
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3.  A component based noise correction method (CompCor) for BOLD and perfusion based fMRI.

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4.  Threshold-free cluster enhancement: addressing problems of smoothing, threshold dependence and localisation in cluster inference.

Authors:  Stephen M Smith; Thomas E Nichols
Journal:  Neuroimage       Date:  2008-04-11       Impact factor: 6.556

5.  Conceptual processing during the conscious resting state. A functional MRI study.

Authors:  J R Binder; J A Frost; T A Hammeke; P S Bellgowan; S M Rao; R W Cox
Journal:  J Cogn Neurosci       Date:  1999-01       Impact factor: 3.225

6.  Toward discovery science of human brain function.

Authors:  Bharat B Biswal; Maarten Mennes; Xi-Nian Zuo; Suril Gohel; Clare Kelly; Steve M Smith; Christian F Beckmann; Jonathan S Adelstein; Randy L Buckner; Stan Colcombe; Anne-Marie Dogonowski; Monique Ernst; Damien Fair; Michelle Hampson; Matthew J Hoptman; James S Hyde; Vesa J Kiviniemi; Rolf Kötter; Shi-Jiang Li; Ching-Po Lin; Mark J Lowe; Clare Mackay; David J Madden; Kristoffer H Madsen; Daniel S Margulies; Helen S Mayberg; Katie McMahon; Christopher S Monk; Stewart H Mostofsky; Bonnie J Nagel; James J Pekar; Scott J Peltier; Steven E Petersen; Valentin Riedl; Serge A R B Rombouts; Bart Rypma; Bradley L Schlaggar; Sein Schmidt; Rachael D Seidler; Greg J Siegle; Christian Sorg; Gao-Jun Teng; Juha Veijola; Arno Villringer; Martin Walter; Lihong Wang; Xu-Chu Weng; Susan Whitfield-Gabrieli; Peter Williamson; Christian Windischberger; Yu-Feng Zang; Hong-Ying Zhang; F Xavier Castellanos; Michael P Milham
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-22       Impact factor: 11.205

7.  Effective Preprocessing Procedures Virtually Eliminate Distance-Dependent Motion Artifacts in Resting State FMRI.

Authors:  Hang Joon Jo; Stephen J Gotts; Richard C Reynolds; Peter A Bandettini; Alex Martin; Robert W Cox; Ziad S Saad
Journal:  J Appl Math       Date:  2013-05-21

8.  Differentiating BOLD and non-BOLD signals in fMRI time series using multi-echo EPI.

Authors:  Prantik Kundu; Souheil J Inati; Jennifer W Evans; Wen-Ming Luh; Peter A Bandettini
Journal:  Neuroimage       Date:  2011-12-23       Impact factor: 6.556

9.  Impact of in-scanner head motion on multiple measures of functional connectivity: relevance for studies of neurodevelopment in youth.

Authors:  Theodore D Satterthwaite; Daniel H Wolf; James Loughead; Kosha Ruparel; Mark A Elliott; Hakon Hakonarson; Ruben C Gur; Raquel E Gur
Journal:  Neuroimage       Date:  2012-01-02       Impact factor: 6.556

10.  Removing motion and physiological artifacts from intrinsic BOLD fluctuations using short echo data.

Authors:  Molly G Bright; Kevin Murphy
Journal:  Neuroimage       Date:  2012-09-21       Impact factor: 6.556

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  88 in total

Review 1.  Characterizing Resting-State Brain Function Using Arterial Spin Labeling.

Authors:  J Jean Chen; Kay Jann; Danny J J Wang
Journal:  Brain Connect       Date:  2015-10-06

2.  Using Edge Voxel Information to Improve Motion Regression for rs-fMRI Connectivity Studies.

Authors:  Rémi Patriat; Erin K Molloy; Rasmus M Birn
Journal:  Brain Connect       Date:  2015-09-28

3.  The Healthy Brain Network Serial Scanning Initiative: a resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions.

Authors:  David O'Connor; Natan Vega Potler; Meagan Kovacs; Ting Xu; Lei Ai; John Pellman; Tamara Vanderwal; Lucas C Parra; Samantha Cohen; Satrajit Ghosh; Jasmine Escalera; Natalie Grant-Villegas; Yael Osman; Anastasia Bui; R Cameron Craddock; Michael P Milham
Journal:  Gigascience       Date:  2017-02-01       Impact factor: 6.524

4.  Functional organization of the human posterior cingulate cortex, revealed by multiple connectivity-based parcellation methods.

Authors:  Jungho Cha; Hang Joon Jo; William S Gibson; Jong-Min Lee
Journal:  Hum Brain Mapp       Date:  2017-03-15       Impact factor: 5.038

5.  Making group inferences using sparse representation of resting-state functional mRI data with application to sleep deprivation.

Authors:  Hui Shen; Huaze Xu; Lubin Wang; Yu Lei; Liu Yang; Peng Zhang; Jian Qin; Ling-Li Zeng; Zongtan Zhou; Zheng Yang; Dewen Hu
Journal:  Hum Brain Mapp       Date:  2017-06-19       Impact factor: 5.038

6.  A multivariate distance-based analytic framework for connectome-wide association studies.

Authors:  Zarrar Shehzad; Clare Kelly; Philip T Reiss; R Cameron Craddock; John W Emerson; Katie McMahon; David A Copland; F Xavier Castellanos; Michael P Milham
Journal:  Neuroimage       Date:  2014-02-28       Impact factor: 6.556

7.  Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data.

Authors:  Matthew F Glasser; Timothy S Coalson; Janine D Bijsterbosch; Samuel J Harrison; Michael P Harms; Alan Anticevic; David C Van Essen; Stephen M Smith
Journal:  Neuroimage       Date:  2018-08-02       Impact factor: 6.556

Review 8.  The Human Connectome Project's neuroimaging approach.

Authors:  Matthew F Glasser; Stephen M Smith; Daniel S Marcus; Jesper L R Andersson; Edward J Auerbach; Timothy E J Behrens; Timothy S Coalson; Michael P Harms; Mark Jenkinson; Steen Moeller; Emma C Robinson; Stamatios N Sotiropoulos; Junqian Xu; Essa Yacoub; Kamil Ugurbil; David C Van Essen
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

9.  Spatial Mechanisms within the Dorsal Visual Pathway Contribute to the Configural Processing of Faces.

Authors:  Valentinos Zachariou; Christine V Nikas; Zaid N Safiullah; Stephen J Gotts; Leslie G Ungerleider
Journal:  Cereb Cortex       Date:  2017-08-01       Impact factor: 5.357

10.  Sources and implications of whole-brain fMRI signals in humans.

Authors:  Jonathan D Power; Mark Plitt; Timothy O Laumann; Alex Martin
Journal:  Neuroimage       Date:  2016-10-15       Impact factor: 6.556

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