Literature DB >> 30941642

CRISPR-based genome editing in wheat: a comprehensive review and future prospects.

Rakesh Kumar1, Amandeep Kaur1, Ankita Pandey1,2, H M Mamrutha3, G P Singh1.   

Abstract

CRISPR technology has vividly increased its applications in last five years for genome editing in a wide range of organisms from bacteria to plants. It is mostly applied in the field of mammalian research. This emerging versatile tool can be utilized in crop improvement by targeting various traits to increase economic value and adaptability of the crop species under changing climate. In plants, Arabidopsis and rice are the most studied plant species in genome editing through CRISPR technology. Wheat is lagging behind in the utilization of CRISPR based genome modifications. The hexaploid, large genome size and the recalcitrant nature in terms of tissue culture are the major obstacles for CRISPR utilization in wheat. Recently, the IWGSC released the high quality of reference genome for wheat which will greatly accelerate the application of CRISPR-based genome engineering in wheat and helps to resolve the global issue of food security in coming decades. The exogenous DNA-free improved mutants with CRISPR technology having desired traits will increase the productivity under biotic and abiotic stress conditions. To address complex traits involving multigene, recently developed multiplex genome editing toolkits can be used. This is a first review of its kind in which the practical utilization and updates on CRISPR validation in wheat along with its future prospects for use of this technology in wheat improvement are comprehensively discussed. Thus, the compiled information will immensely benefit the researchers for utilization of CRISPR system in wheat improvement across the globe.

Entities:  

Keywords:  Agrobacterium; Biolistic; CRISPR; Cas9; Cpf1; Knockout; Protoplast; SgRNA; Wheat

Mesh:

Year:  2019        PMID: 30941642     DOI: 10.1007/s11033-019-04761-3

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  81 in total

1.  High-efficiency TALEN-based gene editing produces disease-resistant rice.

Authors:  Ting Li; Bo Liu; Martin H Spalding; Donald P Weeks; Bing Yang
Journal:  Nat Biotechnol       Date:  2012-05-07       Impact factor: 54.908

Review 2.  Applying CRISPR/Cas for genome engineering in plants: the best is yet to come.

Authors:  Holger Puchta
Journal:  Curr Opin Plant Biol       Date:  2016-11-30       Impact factor: 7.834

3.  Optimization of Agrobacterium-mediated transformation in spring bread wheat using mature and immature embryos.

Authors:  Rakesh Kumar; Harohalli Masthigowda Mamrutha; Amandeep Kaur; Karnam Venkatesh; Davinder Sharma; Gyanendra Pratap Singh
Journal:  Mol Biol Rep       Date:  2019-02-01       Impact factor: 2.316

Review 4.  From Genetic Stock to Genome Editing: Gene Exploitation in Wheat.

Authors:  Meng Wang; Shubin Wang; Zhen Liang; Weiming Shi; Caixia Gao; Guangmin Xia
Journal:  Trends Biotechnol       Date:  2017-11-05       Impact factor: 19.536

5.  CRISPR-Cas9 and CRISPR-Cpf1 mediated targeting of a stomatal developmental gene EPFL9 in rice.

Authors:  Xiaojia Yin; Akshaya K Biswal; Jacqueline Dionora; Kristel M Perdigon; Christian P Balahadia; Shamik Mazumdar; Caspar Chater; Hsiang-Chun Lin; Robert A Coe; Tobias Kretzschmar; Julie E Gray; Paul W Quick; Anindya Bandyopadhyay
Journal:  Plant Cell Rep       Date:  2017-03-27       Impact factor: 4.570

6.  In vivo genome editing using Staphylococcus aureus Cas9.

Authors:  F Ann Ran; Le Cong; Winston X Yan; David A Scott; Jonathan S Gootenberg; Andrea J Kriz; Bernd Zetsche; Ophir Shalem; Xuebing Wu; Kira S Makarova; Eugene V Koonin; Phillip A Sharp; Feng Zhang
Journal:  Nature       Date:  2015-04-01       Impact factor: 49.962

7.  The Neisseria meningitidis CRISPR-Cas9 System Enables Specific Genome Editing in Mammalian Cells.

Authors:  Ciaran M Lee; Thomas J Cradick; Gang Bao
Journal:  Mol Ther       Date:  2016-01-19       Impact factor: 11.454

Review 8.  Genome-editing technologies and their potential application in horticultural crop breeding.

Authors:  Jin-Song Xiong; Jing Ding; Yi Li
Journal:  Hortic Res       Date:  2015-05-13       Impact factor: 6.793

9.  Reassessment of the Four Yield-related Genes Gn1a, DEP1, GS3, and IPA1 in Rice Using a CRISPR/Cas9 System.

Authors:  Meiru Li; Xiaoxia Li; Zejiao Zhou; Pingzhi Wu; Maichun Fang; Xiaoping Pan; Qiupeng Lin; Wanbin Luo; Guojiang Wu; Hongqing Li
Journal:  Front Plant Sci       Date:  2016-03-30       Impact factor: 5.753

Review 10.  The CRISPR/Cas Genome-Editing Tool: Application in Improvement of Crops.

Authors:  Surender Khatodia; Kirti Bhatotia; Nishat Passricha; S M P Khurana; Narendra Tuteja
Journal:  Front Plant Sci       Date:  2016-04-19       Impact factor: 5.753

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  10 in total

Review 1.  CRISPR/Cas technology for improving nutritional values in the agricultural sector: an update.

Authors:  Mayank Chaudhary; Tapan Kumar Mukherjee; Raj Singh; Mahiti Gupta; Soniya Goyal; Paavan Singhal; Rakesh Kumar; Nabin Bhusal; Pooja Sharma
Journal:  Mol Biol Rep       Date:  2022-05-14       Impact factor: 2.742

Review 2.  CRISPER/CAS System, a Novel Tool of Targeted Therapy of Drug-Resistant Lung Cancer.

Authors:  Vahid Akbari Kordkheyli; Mohsen Rashidi; Yasaman Shokri; Samane Fallahpour; Atena Variji; Ehsan Nabipour Ghara; Sayed Mostafa Hosseini
Journal:  Adv Pharm Bull       Date:  2021-04-03

Review 3.  Breeding for drought and heat tolerance in wheat.

Authors:  Peter Langridge; Matthew Reynolds
Journal:  Theor Appl Genet       Date:  2021-03-14       Impact factor: 5.699

4.  Efficient TALEN-mediated gene editing in wheat.

Authors:  Ming Luo; Hongyu Li; Soma Chakraborty; Robert Morbitzer; Amy Rinaldo; Narayana Upadhyaya; Dhara Bhatt; Smitha Louis; Terese Richardson; Thomas Lahaye; Michael Ayliffe
Journal:  Plant Biotechnol J       Date:  2019-06-06       Impact factor: 9.803

5.  A catalogue of biochemically diverse CRISPR-Cas9 orthologs.

Authors:  Giedrius Gasiunas; Joshua K Young; Tautvydas Karvelis; Darius Kazlauskas; Tomas Urbaitis; Monika Jasnauskaite; Mantvyda M Grusyte; Sushmitha Paulraj; Po-Hao Wang; Zhenglin Hou; Shane K Dooley; Mark Cigan; Clara Alarcon; N Doane Chilcoat; Greta Bigelyte; Jennifer L Curcuru; Megumu Mabuchi; Zhiyi Sun; Ryan T Fuchs; Ezra Schildkraut; Peter R Weigele; William E Jack; G Brett Robb; Česlovas Venclovas; Virginijus Siksnys
Journal:  Nat Commun       Date:  2020-11-02       Impact factor: 14.919

6.  Wheat genetic loci conferring resistance to stripe rust in the face of genetically diverse races of the fungus Puccinia striiformis f. sp. tritici.

Authors:  Laura Bouvet; Lawrence Percival-Alwyn; Simon Berry; Paul Fenwick; Camila Campos Mantello; Rajiv Sharma; Sarah Holdgate; Ian J Mackay; James Cockram
Journal:  Theor Appl Genet       Date:  2021-11-27       Impact factor: 5.699

Review 7.  Applications of In Vitro Tissue Culture Technologies in Breeding and Genetic Improvement of Wheat.

Authors:  Akila Wijerathna-Yapa; Vinita Ramtekey; Buddhini Ranawaka; Bhoja Raj Basnet
Journal:  Plants (Basel)       Date:  2022-08-31

8.  Functional Validation of cas9/guideRNA Constructs for Site-Directed Mutagenesis of Triticale ABA8'OH1 loci.

Authors:  Krzysztof Michalski; Christian Hertig; Dariusz R Mańkowski; Jochen Kumlehn; Janusz Zimny; Anna M Linkiewicz
Journal:  Int J Mol Sci       Date:  2021-06-29       Impact factor: 5.923

9.  Characterization of QTL and eQTL controlling early Fusarium graminearum infection and deoxynivalenol levels in a Wuhan 1 x Nyubai doubled haploid wheat population.

Authors:  François Fauteux; Yunli Wang; Hélène Rocheleau; Ziying Liu; Youlian Pan; George Fedak; Curt McCartney; Thérèse Ouellet
Journal:  BMC Plant Biol       Date:  2019-12-03       Impact factor: 4.215

Review 10.  Targeted plant improvement through genome editing: from laboratory to field.

Authors:  Dragana Miladinovic; Dulce Antunes; Kubilay Yildirim; Allah Bakhsh; Sandra Cvejić; Ankica Kondić-Špika; Ana Marjanovic Jeromela; Hilde-Gunn Opsahl-Sorteberg; Antonios Zambounis; Zoe Hilioti
Journal:  Plant Cell Rep       Date:  2021-01-21       Impact factor: 4.570

  10 in total

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