Literature DB >> 23687988

2D IR spectroscopy using four-wave mixing, pulse shaping, and IR upconversion: a quantitative comparison.

William Rock1, Yun-Liang Li, Philip Pagano, Christopher M Cheatum.   

Abstract

Recent technological advances have led to major changes in the apparatuses used to collect 2D IR spectra. Pulse shaping offers several advantages including rapid data collection, inherent phase stability, and phase-cycling capabilities. Visible array detection via upconversion allows the use of visible detectors that are cheaper, faster, more sensitive, and less noisy than IR detectors. However, despite these advantages, many researchers are reluctant to implement these technologies. Here we present a quantitative study of the S/N of 2D IR spectra collected with a traditional four-wave mixing (FWM) apparatus, with a pulse shaping apparatus, and with visible detection via upconversion to address the question of whether weak chromophores at low concentrations are still accessible with such an apparatus. We find that the enhanced averaging capability of the pulse shaping apparatus enables the detection of small signals that would be challenging to measure even with the traditional FWM apparatus, and we demonstrate this ability on a sample of cyanylated dihydrofolate reductase.

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Year:  2013        PMID: 23687988      PMCID: PMC3723749          DOI: 10.1021/jp312817t

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  36 in total

1.  Active phase stabilization in Fourier-transform two-dimensional infrared spectroscopy.

Authors:  Victor Volkov; Roland Schanz; Peter Hamm
Journal:  Opt Lett       Date:  2005-08-01       Impact factor: 3.776

2.  Two-dimensional infrared spectroscopy detected by chirped pulse upconversion.

Authors:  Matthew J Nee; Robert McCanne; Kevin J Kubarych; Manuel Joffre
Journal:  Opt Lett       Date:  2007-03-15       Impact factor: 3.776

3.  Controlling vibrational excitation with shaped mid-IR pulses.

Authors:  David B Strasfeld; Sang-Hee Shim; Martin T Zanni
Journal:  Phys Rev Lett       Date:  2007-07-18       Impact factor: 9.161

4.  Two-dimensional Fourier transform spectroscopy in the pump-probe geometry.

Authors:  Lauren P Deflores; Rebecca A Nicodemus; Andrei Tokmakoff
Journal:  Opt Lett       Date:  2007-10-15       Impact factor: 3.776

5.  Two-dimensional IR spectroscopy and isotope labeling defines the pathway of amyloid formation with residue-specific resolution.

Authors:  Sang-Hee Shim; Ruchi Gupta; Yun L Ling; David B Strasfeld; Daniel P Raleigh; Martin T Zanni
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-03       Impact factor: 11.205

6.  Facile collection of two-dimensional electronic spectra using femtosecond pulse-shaping Technology.

Authors:  Erik M Grumstrup; Sang-Hee Shim; Matthew A Montgomery; Niels H Damrauer; Martin T Zanni
Journal:  Opt Express       Date:  2007-12-10       Impact factor: 3.894

7.  Dual-beam subpicosecond broadband infrared spectrometer.

Authors:  T P Dougherty; E J Heilwell
Journal:  Opt Lett       Date:  1994-01-15       Impact factor: 3.776

8.  Insights into the mechanism of proton transport in cytochrome c oxidase.

Authors:  Takefumi Yamashita; Gregory A Voth
Journal:  J Am Chem Soc       Date:  2012-01-06       Impact factor: 15.419

Review 9.  How to turn your pump-probe instrument into a multidimensional spectrometer: 2D IR and Vis spectroscopies via pulse shaping.

Authors:  Sang-Hee Shim; Martin T Zanni
Journal:  Phys Chem Chem Phys       Date:  2008-12-10       Impact factor: 3.676

10.  The function of amino acid residues contacting the nicotinamide ring of NADPH in dihydrofolate reductase from Escherichia coli.

Authors:  J A Adams; C A Fierke; S J Benkovic
Journal:  Biochemistry       Date:  1991-11-19       Impact factor: 3.162

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  15 in total

1.  Fully absorptive 3D IR spectroscopy using a dual mid-infrared pulse shaper.

Authors:  Sudipta S Mukherjee; David R Skoff; Chris T Middleton; Martin T Zanni
Journal:  J Chem Phys       Date:  2013-10-14       Impact factor: 3.488

2.  Experimental implementations of 2D IR spectroscopy through a horizontal pulse shaper design and a focal plane array detector.

Authors:  Ayanjeet Ghosh; Arnaldo L Serrano; Tracey A Oudenhoven; Joshua S Ostrander; Elliot C Eklund; Alexander F Blair; Martin T Zanni
Journal:  Opt Lett       Date:  2016-02-01       Impact factor: 3.776

Review 3.  Applications of two-dimensional infrared spectroscopy.

Authors:  Amanda L Le Sueur; Rachel E Horness; Megan C Thielges
Journal:  Analyst       Date:  2015-07-07       Impact factor: 4.616

4.  Line shape analysis of two-dimensional infrared spectra.

Authors:  Qi Guo; Philip Pagano; Yun-Liang Li; Amnon Kohen; Christopher M Cheatum
Journal:  J Chem Phys       Date:  2015-06-07       Impact factor: 3.488

Review 5.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

6.  Accelerating two-dimensional infrared spectroscopy while preserving lineshapes using GIRAF.

Authors:  Ipshita Bhattacharya; Jonathan J Humston; Christopher M Cheatum; Mathews Jacob
Journal:  Opt Lett       Date:  2017-11-15       Impact factor: 3.776

7.  Transparent window 2D IR spectroscopy of proteins.

Authors:  Megan C Thielges
Journal:  J Chem Phys       Date:  2021-07-28       Impact factor: 3.488

8.  Oscillatory Active-site Motions Correlate with Kinetic Isotope Effects in Formate Dehydrogenase.

Authors:  Philip Pagano; Qi Guo; Chethya Ranasinghe; Evan Schroeder; Kevin Robben; Florian Häse; Hepeng Ye; Kyle Wickersham; Alán Aspuru-Guzik; Dan T Major; Lokesh Gakhar; Amnon Kohen; Christopher M Cheatum
Journal:  ACS Catal       Date:  2019-10-25       Impact factor: 13.084

9.  Site-Specific 1D and 2D IR Spectroscopy to Characterize the Conformations and Dynamics of Protein Molecular Recognition.

Authors:  Sashary Ramos; Megan C Thielges
Journal:  J Phys Chem B       Date:  2019-03-21       Impact factor: 2.991

10.  Oscillatory Enzyme Dynamics Revealed by Two-Dimensional Infrared Spectroscopy.

Authors:  Philip Pagano; Qi Guo; Amnon Kohen; Christopher M Cheatum
Journal:  J Phys Chem Lett       Date:  2016-06-21       Impact factor: 6.475

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