Literature DB >> 11418767

Anomalous signal of phosphorus used for phasing DNA oligomer: importance of data redundancy.

Z Dauter1, D A Adamiak.   

Abstract

The crystal structure of a left-handed Z-DNA hexamer duplex d(CGCGCG)(2) has been solved based on the anomalous diffraction signal of inherent P atoms using data collected at the single wavelength of 1.54 A. The anomalous signal of about 2% of the total diffracted intensity, constant for all nucleic acids, may be generally useful for solving crystal structures of DNA and RNA oligomers. The multiplicity of intensity measurements is shown to crucially affect the data quality and the ability to solve the phase problem. The anisotropic model refined to an R factor of 8.9% at 0.95 A resolution.

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Year:  2001        PMID: 11418767     DOI: 10.1107/s0907444901006382

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  31 in total

1.  Multi-crystal anomalous diffraction for low-resolution macromolecular phasing.

Authors:  Qun Liu; Zhen Zhang; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-12-16

2.  Nucleic-acid structural deformability deduced from anisotropic displacement parameters.

Authors:  Heather E Peckham; Wilma K Olson
Journal:  Biopolymers       Date:  2010-11-29       Impact factor: 2.505

3.  A general strategy to solve the phase problem in RNA crystallography.

Authors:  Amanda Y Keel; Robert P Rambo; Robert T Batey; Jeffrey S Kieft
Journal:  Structure       Date:  2007-07       Impact factor: 5.006

4.  In-house zinc SAD phasing at Cu Kα edge.

Authors:  Min-Kyu Kim; Sangmin Lee; Young Jun An; Chang-Sook Jeong; Chang-Jun Ji; Jin-Won Lee; Sun-Shin Cha
Journal:  Mol Cells       Date:  2013-05-18       Impact factor: 5.034

5.  Structures from anomalous diffraction of native biological macromolecules.

Authors:  Qun Liu; Tassadite Dahmane; Zhen Zhang; Zahra Assur; Julia Brasch; Lawrence Shapiro; Filippo Mancia; Wayne A Hendrickson
Journal:  Science       Date:  2012-05-25       Impact factor: 47.728

6.  Multi-crystal native SAD analysis at 6 keV.

Authors:  Qun Liu; Youzhong Guo; Yanqi Chang; Zheng Cai; Zahra Assur; Filippo Mancia; Mark I Greene; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-09-30

Review 7.  Anomalous diffraction in crystallographic phase evaluation.

Authors:  Wayne A Hendrickson
Journal:  Q Rev Biophys       Date:  2014-02       Impact factor: 5.318

Review 8.  Many Ways to Derivatize Macromolecules and Their Crystals for Phasing.

Authors:  Miroslawa Dauter; Zbigniew Dauter
Journal:  Methods Mol Biol       Date:  2017

9.  Toward Improved Description of DNA Backbone: Revisiting Epsilon and Zeta Torsion Force Field Parameters.

Authors:  Marie Zgarbová; F Javier Luque; Jiří Sponer; Thomas E Cheatham; Michal Otyepka; Petr Jurečka
Journal:  J Chem Theory Comput       Date:  2013-05-14       Impact factor: 6.006

Review 10.  Crystallographic phasing from weak anomalous signals.

Authors:  Qun Liu; Wayne A Hendrickson
Journal:  Curr Opin Struct Biol       Date:  2015-09-30       Impact factor: 6.809

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