Literature DB >> 10089497

HAD, a data bank of heavy-atom binding sites in protein crystals: a resource for use in multiple isomorphous replacement and anomalous scattering.

S A Islam1, D Carvin, M J Sternberg, T L Blundell.   

Abstract

Information on the preparation and characterization of heavy-atom derivatives of protein crystals has been collected, either from the literature or directly from protein crystallographers, and assembled in the form of a heavy-atom data bank (HAD). The data bank contains coordinate data for the heavy-atom positions in a form that is compatible with the crystallographic data in the Brookhaven Protein Data Bank, together with a wealth of information on the crystallization conditions, the nature of the heavy-atom reagent and references to relevant publications. Some statistical information derived from the data bank, such as the most popular heavy-atom derivatives, is also included. The information can be directly accessed and should be useful to protein crystallographers seeking to improve their success in preparing heavy-atom derivatives for the methods of isomorphous replacement and anomalous dispersion. The World Wide Web address of HAD is http://www.icnet.uk/bmm/had.

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Year:  1998        PMID: 10089497     DOI: 10.1107/s090744499800715x

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  6 in total

1.  Towards a rational approach for heavy-atom derivative screening in protein crystallography.

Authors:  Johnson Agniswamy; M Gordon Joyce; Carl H Hammer; Peter D Sun
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-03-19

2.  In-house zinc SAD phasing at Cu Kα edge.

Authors:  Min-Kyu Kim; Sangmin Lee; Young Jun An; Chang-Sook Jeong; Chang-Jun Ji; Jin-Won Lee; Sun-Shin Cha
Journal:  Mol Cells       Date:  2013-05-18       Impact factor: 5.034

Review 3.  Many Ways to Derivatize Macromolecules and Their Crystals for Phasing.

Authors:  Miroslawa Dauter; Zbigniew Dauter
Journal:  Methods Mol Biol       Date:  2017

4.  A rapid and rational approach to generating isomorphous heavy-atom phasing derivatives.

Authors:  Jinghua Lu; Peter D Sun
Journal:  FEBS J       Date:  2014-07-29       Impact factor: 5.542

5.  A rational approach to heavy-atom derivative screening.

Authors:  M Gordon Joyce; Sergei Radaev; Peter D Sun
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 6.  An overview of heavy-atom derivatization of protein crystals.

Authors:  Ashley C W Pike; Elspeth F Garman; Tobias Krojer; Frank von Delft; Elisabeth P Carpenter
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

  6 in total

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