Literature DB >> 24173644

Experimental phasing using zinc and sulfur anomalous signals measured at the zinc absorption peak.

Sangmin Lee1, Min-Kyu Kim, Chang-Jun Ji, Jin-Won Lee, Sun-Shin Cha.   

Abstract

Iron is an essential transition metal required for bacterial growth and survival. Excess free iron can lead to the generation of reactive oxygen species that can cause severe damage to cellular functions. Cells have developed iron-sensing regulators to maintain iron homeostasis at the transcription level. The ferric uptake regulator (Fur) is an iron-responsive regulator that controls the expression of genes involved in iron homeostasis, bacterial virulence, stress resistance, and redox metabolism. Here, we report the expression, purification, crystallization, and phasing of the apo-form of Bacillus subtilis Fur (BsFur) in the absence of regulatory metal ions. Crystals were obtained by microbatch crystallization method at 295 K and diffraction data at a resolution of 2.6 Å was collected at the zinc peak wavelength (λ=1.2823 Å). Experimental phasing identified the positions of one zinc atom and four sulfur atoms of cysteine residues coordinating the zinc atom, indicating that the data contained a meaningful anomalous scattering originating from the ordered zinc-coordinating sulfur atoms, in spite of the small anomalous signals of sulfur atoms at the examined wavelength.

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Year:  2013        PMID: 24173644     DOI: 10.1007/s12275-013-3412-2

Source DB:  PubMed          Journal:  J Microbiol        ISSN: 1225-8873            Impact factor:   3.422


  37 in total

1.  Automated structure solution, density modification and model building.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

Review 2.  Regulation by iron: RNA rules the rust.

Authors:  Robert J Kadner
Journal:  J Bacteriol       Date:  2005-10       Impact factor: 3.490

Review 3.  Functional specialization within the Fur family of metalloregulators.

Authors:  Jin-Won Lee; John D Helmann
Journal:  Biometals       Date:  2007-01-10       Impact factor: 2.949

4.  Graded expression of zinc-responsive genes through two regulatory zinc-binding sites in Zur.

Authors:  Jung-Ho Shin; Hoi Jong Jung; Young Jun An; Yoo-Bok Cho; Sun-Shin Cha; Jung-Hye Roe
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

Review 5.  Iron and microbial infection.

Authors:  Ulrich E Schaible; Stefan H E Kaufmann
Journal:  Nat Rev Microbiol       Date:  2004-12       Impact factor: 60.633

6.  Experimental phasing with SHELXC/D/E: combining chain tracing with density modification.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Staphylococcus aureus fur regulates the expression of virulence factors that contribute to the pathogenesis of pneumonia.

Authors:  Victor J Torres; Ahmed S Attia; William J Mason; M Indriati Hood; Brian D Corbin; Federico C Beasley; Kelsi L Anderson; Devin L Stauff; W Hayes McDonald; Lisa J Zimmerman; David B Friedman; David E Heinrichs; Paul M Dunman; Eric P Skaar
Journal:  Infect Immun       Date:  2010-01-25       Impact factor: 3.441

8.  Sequential binding and sensing of Zn(II) by Bacillus subtilis Zur.

Authors:  Zhen Ma; Scott E Gabriel; John D Helmann
Journal:  Nucleic Acids Res       Date:  2011-08-05       Impact factor: 16.971

9.  Experimental phasing using zinc anomalous scattering.

Authors:  Sun-Shin Cha; Young Jun An; Chang-Sook Jeong; Min-Kyu Kim; Sung-Gyu Lee; Kwang-Hoon Lee; Byung-Ha Oh
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-08-18

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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