Literature DB >> 23683346

Innovation in academic chemical screening: filling the gaps in chemical biology.

Samuel A Hasson1, James Inglese.   

Abstract

Academic screening centers across the world have endeavored to discover small molecules that can modulate biological systems. To increase the reach of functional-genomic and chemical screening programs, universities, research institutes, and governments have followed their industrial counterparts in adopting high-throughput paradigms. As academic screening efforts have steadily grown in scope and complexity, so have the ideas of what is possible with the union of technology and biology. This review addresses the recent conceptual and technological innovation that has been propelling academic screening into its own unique niche. In particular, high-content and whole-organism screening are changing how academics search for novel bioactive compounds. Importantly, we recognize examples of successful chemical probe development that have punctuated the changing technology landscape. Published by Elsevier Ltd.

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Year:  2013        PMID: 23683346      PMCID: PMC3719966          DOI: 10.1016/j.cbpa.2013.04.018

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  84 in total

1.  Phaedra, a protocol-driven system for analysis and validation of high-content imaging and flow cytometry.

Authors:  Frans Cornelissen; Miroslav Cik; Emmanuel Gustin
Journal:  J Biomol Screen       Date:  2012-01-10

2.  A small molecule that directs differentiation of human ESCs into the pancreatic lineage.

Authors:  Shuibing Chen; Malgorzata Borowiak; Julia L Fox; René Maehr; Kenji Osafune; Lance Davidow; Kelvin Lam; Lee F Peng; Stuart L Schreiber; Lee L Rubin; Douglas Melton
Journal:  Nat Chem Biol       Date:  2009-03-15       Impact factor: 15.040

3.  Adapting human pluripotent stem cells to high-throughput and high-content screening.

Authors:  Sabrina C Desbordes; Lorenz Studer
Journal:  Nat Protoc       Date:  2012-12-20       Impact factor: 13.491

4.  Four disruptive strategies for removing drug discovery bottlenecks.

Authors:  Sean Ekins; Chris L Waller; Mary P Bradley; Alex M Clark; Antony J Williams
Journal:  Drug Discov Today       Date:  2012-10-23       Impact factor: 7.851

5.  Targeted genome editing across species using ZFNs and TALENs.

Authors:  Andrew J Wood; Te-Wen Lo; Bryan Zeitler; Catherine S Pickle; Edward J Ralston; Andrew H Lee; Rainier Amora; Jeffrey C Miller; Elo Leung; Xiangdong Meng; Lei Zhang; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; Barbara J Meyer
Journal:  Science       Date:  2011-06-23       Impact factor: 47.728

6.  A high-throughput method for assessing chemical toxicity using a Caenorhabditis elegans reproduction assay.

Authors:  Windy A Boyd; Sandra J McBride; Julie R Rice; Daniel W Snyder; Jonathan H Freedman
Journal:  Toxicol Appl Pharmacol       Date:  2010-03-04       Impact factor: 4.219

7.  N-myristoyltransferase inhibitors as new leads to treat sleeping sickness.

Authors:  Julie A Frearson; Stephen Brand; Stuart P McElroy; Laura A T Cleghorn; Ondrej Smid; Laste Stojanovski; Helen P Price; M Lucia S Guther; Leah S Torrie; David A Robinson; Irene Hallyburton; Chidochangu P Mpamhanga; James A Brannigan; Anthony J Wilkinson; Michael Hodgkinson; Raymond Hui; Wei Qiu; Olawale G Raimi; Daan M F van Aalten; Ruth Brenk; Ian H Gilbert; Kevin D Read; Alan H Fairlamb; Michael A J Ferguson; Deborah F Smith; Paul G Wyatt
Journal:  Nature       Date:  2010-04-01       Impact factor: 49.962

8.  Highly efficient generation of heritable zebrafish gene mutations using homo- and heterodimeric TALENs.

Authors:  Lindsay Cade; Deepak Reyon; Woong Y Hwang; Shengdar Q Tsai; Samir Patel; Cyd Khayter; J Keith Joung; Jeffry D Sander; Randall T Peterson; Jing-Ruey Joanna Yeh
Journal:  Nucleic Acids Res       Date:  2012-06-07       Impact factor: 16.971

9.  Improved somatic mutagenesis in zebrafish using transcription activator-like effector nucleases (TALENs).

Authors:  Finola E Moore; Deepak Reyon; Jeffry D Sander; Sarah A Martinez; Jessica S Blackburn; Cyd Khayter; Cherie L Ramirez; J Keith Joung; David M Langenau
Journal:  PLoS One       Date:  2012-05-24       Impact factor: 3.240

10.  Development and validation of an automated high-throughput system for zebrafish in vivo screenings.

Authors:  Ainhoa Letamendia; Celia Quevedo; Izaskun Ibarbia; Juan M Virto; Olaia Holgado; Maria Diez; Juan Carlos Izpisua Belmonte; Carles Callol-Massot
Journal:  PLoS One       Date:  2012-05-15       Impact factor: 3.240

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  8 in total

Review 1.  Mitigating risk in academic preclinical drug discovery.

Authors:  Jayme L Dahlin; James Inglese; Michael A Walters
Journal:  Nat Rev Drug Discov       Date:  2015-04       Impact factor: 84.694

2.  Identification of therapeutic small-molecule leads in cultured cells using multiplexed pathway reporter readouts.

Authors:  Ozlem Kulak; Kiyoshi Yamaguchi; Lawrence Lum
Journal:  Methods Mol Biol       Date:  2015

3.  Quantitative High-Throughput Screening Using a Coincidence Reporter Biocircuit.

Authors:  Brittany W Schuck; Ryan MacArthur; James Inglese
Journal:  Curr Protoc Neurosci       Date:  2017-04-10

Review 4.  Chemical genomics for studying parasite gene function and interaction.

Authors:  Jian Li; Jing Yuan; Ken Chih-Chien Cheng; James Inglese; Xin-zhuan Su
Journal:  Trends Parasitol       Date:  2013-11-09

5.  First quantitative high-throughput screen in zebrafish identifies novel pathways for increasing pancreatic β-cell mass.

Authors:  Guangliang Wang; Surendra K Rajpurohit; Fabien Delaspre; Steven L Walker; David T White; Alexis Ceasrine; Rejji Kuruvilla; Ruo-Jing Li; Joong S Shim; Jun O Liu; Michael J Parsons; Jeff S Mumm
Journal:  Elife       Date:  2015-07-28       Impact factor: 8.140

Review 6.  Complementary Approaches to Existing Target Based Drug Discovery for Identifying Novel Drug Targets.

Authors:  Suhas Vasaikar; Pooja Bhatia; Partap G Bhatia; Koon Chu Yaiw
Journal:  Biomedicines       Date:  2016-11-21

7.  Data-analysis strategies for image-based cell profiling.

Authors:  Juan C Caicedo; Sam Cooper; Florian Heigwer; Scott Warchal; Peng Qiu; Csaba Molnar; Aliaksei S Vasilevich; Joseph D Barry; Harmanjit Singh Bansal; Oren Kraus; Mathias Wawer; Lassi Paavolainen; Markus D Herrmann; Mohammad Rohban; Jane Hung; Holger Hennig; John Concannon; Ian Smith; Paul A Clemons; Shantanu Singh; Paul Rees; Peter Horvath; Roger G Linington; Anne E Carpenter
Journal:  Nat Methods       Date:  2017-08-31       Impact factor: 28.547

Review 8.  Use of a Fission Yeast Platform to Identify and Characterize Small Molecule PDE Inhibitors.

Authors:  Charles S Hoffman
Journal:  Front Pharmacol       Date:  2022-01-17       Impact factor: 5.810

  8 in total

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