Literature DB >> 23660407

Solvent isotope and viscosity effects on the steady-state kinetics of the flavoprotein nitroalkane oxidase.

Giovanni Gadda1, Paul F Fitzpatrick.   

Abstract

The flavoprotein nitroalkane oxidase catalyzes the oxidative denitrification of a broad range of primary and secondary nitroalkanes to yield the respective aldehydes or ketones, hydrogen peroxide and nitrite. With nitroethane as substrate the D2O(k(cat)/K(M)) value is 0.6 and the D2Ok(cat) value is 2.4. The k(cat) proton inventory is consistent with a single exchangeable proton in flight, while the k(cat)/K(M) is consistent with either a single proton in flight in the transition state or a medium effect. Increasing the solvent viscosity did not affect the k(cat) or k(cat)/K(M) value significantly, establishing that nitroethane binding is at equilibrium and that product release does not limit k(cat).
Copyright © 2013 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Flavoprotein; Michaelis–Menten kinetics; Nitroalkane oxidase; Solvent isotope effect; Viscosity

Mesh:

Substances:

Year:  2013        PMID: 23660407      PMCID: PMC3916838          DOI: 10.1016/j.febslet.2013.04.021

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  25 in total

1.  Crystal structures of intermediates in the nitroalkane oxidase reaction.

Authors:  Annie Héroux; Dragana M Bozinovski; Michael P Valley; Paul F Fitzpatrick; Allen M Orville
Journal:  Biochemistry       Date:  2009-04-21       Impact factor: 3.162

2.  Differential quantum tunneling contributions in nitroalkane oxidase catalyzed and the uncatalyzed proton transfer reaction.

Authors:  Dan T Major; Annie Heroux; Allen M Orville; Michael P Valley; Paul F Fitzpatrick; Jiali Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-19       Impact factor: 11.205

3.  The original Michaelis constant: translation of the 1913 Michaelis-Menten paper.

Authors:  Leonor Michaelis; Maud Leonora Menten; Kenneth A Johnson; Roger S Goody
Journal:  Biochemistry       Date:  2011-09-09       Impact factor: 3.162

4.  Solvent polarization and kinetic isotope effects in nitroethane deprotonation and implications to the nitroalkane oxidase reaction.

Authors:  Dan T Major; Darrin M York; Jiali Gao
Journal:  J Am Chem Soc       Date:  2005-11-30       Impact factor: 15.419

5.  Biochemical and physical characterization of the active FAD-containing form of nitroalkane oxidase from Fusarium oxysporum.

Authors:  G Gadda; P F Fitzpatrick
Journal:  Biochemistry       Date:  1998-04-28       Impact factor: 3.162

6.  Identification of a hypothetical protein from Podospora anserina as a nitroalkane oxidase.

Authors:  José R Tormos; Alexander B Taylor; S Colette Daubner; P John Hart; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

7.  Oxygen activation in flavoprotein oxidases: the importance of being positive.

Authors:  Giovanni Gadda
Journal:  Biochemistry       Date:  2012-03-22       Impact factor: 3.162

8.  Substrate specificity of a nitroalkane-oxidizing enzyme.

Authors:  G Gadda; P F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  1999-03-15       Impact factor: 4.013

9.  Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.

Authors:  Paul F Fitzpatrick; Dragana M Bozinovski; Annie Héroux; Patrick G Shaw; Michael P Valley; Allen M Orville
Journal:  Biochemistry       Date:  2007-11-10       Impact factor: 3.162

10.  Characterization of active site residues of nitroalkane oxidase.

Authors:  Michael P Valley; Nana S Fenny; Shah R Ali; Paul F Fitzpatrick
Journal:  Bioorg Chem       Date:  2009-12-28       Impact factor: 5.275

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  4 in total

1.  Evidence for distinct rate-limiting steps in the cleavage of alkenes by carotenoid cleavage dioxygenases.

Authors:  Nimesh Khadka; Erik R Farquhar; Hannah E Hill; Wuxian Shi; Johannes von Lintig; Philip D Kiser
Journal:  J Biol Chem       Date:  2019-05-28       Impact factor: 5.157

Review 2.  Nitroalkane oxidase: Structure and mechanism.

Authors:  Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2017-05-18       Impact factor: 4.013

3.  Non-chemical proton-dependent steps prior to O2-activation limit Azotobacter vinelandii 3-mercaptopropionic acid dioxygenase (MDO) catalysis.

Authors:  Joshua K Crowell; Sinjinee Sardar; Mohammad S Hossain; Frank W Foss; Brad S Pierce
Journal:  Arch Biochem Biophys       Date:  2016-06-13       Impact factor: 4.013

4.  Solvent and Temperature Probes of the Long-Range Electron-Transfer Step in Tyramine β-Monooxygenase: Demonstration of a Long-Range Proton-Coupled Electron-Transfer Mechanism.

Authors:  Hui Zhu; Monika Sommerhalter; Andy K L Nguy; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2015-04-28       Impact factor: 15.419

  4 in total

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