Literature DB >> 22432926

Oxygen activation in flavoprotein oxidases: the importance of being positive.

Giovanni Gadda1.   

Abstract

The oxidation of flavin hydroquinones by O(2) in solution is slow, with second-order rate constants of ~250 M(-1) s(-1). This is due to the obligatory, single-electron transfer that initiates the reaction being thermodynamically unfavored and poorly catalyzed. Notwithstanding considerations of O(2) accessibility to the reaction site, its desolvation and geometry and other factors that can also contribute to further rate acceleration, flavoprotein oxidases must activate O(2) for reaction with flavin hydroquinones to be able to achieve the 100-1000-fold rate enhancements typically observed. Protein positive charges have been identified in glucose oxidase, monomeric sarcosine oxidase, N-methyltryptophan oxidase and fructosamine oxidase that electrostatically stabilize the transition state for the initial single electron transfer that generates the O(2)(-•)/flavin semiquinone radical pair. In choline oxidase despite the presence of three histidines in the active site, the trimethylammonium group of the reaction product provides such an electrostatic stabilization. A nonpolar site proximal to the flavin C(4a) atom in choline oxidase has also been identified, which contributes to the geometry and desolvation of the O(2) reaction site. The relevance of O(2) activation by product charges to other flavoprotein oxidases, such as for example those catalyzing amine oxidations, is discussed in this review. A nonpolar site close to the flavin C(4a) atom and a positive charge is identified through structural analysis in several flavoprotein oxidases. Mutagenesis has disclosed nonpolar sites in O(2)-reducing enzymes that utilize copper/TPQ or iron. It is predicted that classes of O(2)-reducing enzymes utilizing other cofactors also contain a similar catalytic motif.

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Year:  2012        PMID: 22432926     DOI: 10.1021/bi300227d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  35 in total

1.  Insights into Thiotemplated Pyrrole Biosynthesis Gained from the Crystal Structure of Flavin-Dependent Oxidase in Complex with Carrier Protein.

Authors:  Hem R Thapa; John M Robbins; Bradley S Moore; Vinayak Agarwal
Journal:  Biochemistry       Date:  2019-01-23       Impact factor: 3.162

2.  A complete bioconversion cascade for dehalogenation and denitration by bacterial flavin-dependent enzymes.

Authors:  Panu Pimviriyakul; Pimchai Chaiyen
Journal:  J Biol Chem       Date:  2018-10-03       Impact factor: 5.157

3.  Functional Annotation of a Presumed Nitronate Monoxygenase Reveals a New Class of NADH:Quinone Reductases.

Authors:  Jacob Ball; Francesca Salvi; Giovanni Gadda
Journal:  J Biol Chem       Date:  2016-08-08       Impact factor: 5.157

4.  Beyond the Protein Matrix: Probing Cofactor Variants in a Baeyer-Villiger Oxygenation Reaction.

Authors:  Christian Martinoli; Hanna M Dudek; Roberto Orru; Dale E Edmondson; Marco W Fraaije; Andrea Mattevi
Journal:  ACS Catal       Date:  2013       Impact factor: 13.084

5.  Slow domain reconfiguration causes power-law kinetics in a two-state enzyme.

Authors:  Iris Grossman-Haham; Gabriel Rosenblum; Trishool Namani; Hagen Hofmann
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-03       Impact factor: 11.205

Review 6.  Protein-Derived Cofactors Revisited: Empowering Amino Acid Residues with New Functions.

Authors:  Victor L Davidson
Journal:  Biochemistry       Date:  2018-03-06       Impact factor: 3.162

7.  Initial investigations of C4a-(hydro)peroxyflavin intermediate formation by dibenzothiophene monooxygenase.

Authors:  Liliana Gonzalez-Osorio; Kelvin Luong; Samatar Jirde; Bruce A Palfey; Jessica L Vey
Journal:  Biochem Biophys Res Commun       Date:  2016-11-01       Impact factor: 3.575

8.  Monooxygenase Substrates Mimic Flavin to Catalyze Cofactorless Oxygenations.

Authors:  Melodie M Machovina; Robert J Usselman; Jennifer L DuBois
Journal:  J Biol Chem       Date:  2016-06-15       Impact factor: 5.157

9.  How a cofactor-free protein environment lowers the barrier to O2 reactivity.

Authors:  Melodie M Machovina; Emerald S Ellis; Thomas J Carney; Fikile R Brushett; Jennifer L DuBois
Journal:  J Biol Chem       Date:  2019-01-02       Impact factor: 5.157

10.  Mechanistic and structural analyses of the roles of active site residues in yeast polyamine oxidase Fms1: characterization of the N195A and D94N enzymes.

Authors:  Mariya S Adachi; Alexander B Taylor; P John Hart; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2012-10-15       Impact factor: 3.162

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