Literature DB >> 16305206

Solvent polarization and kinetic isotope effects in nitroethane deprotonation and implications to the nitroalkane oxidase reaction.

Dan T Major1, Darrin M York, Jiali Gao.   

Abstract

We have carried out a mixed molecular dynamics and centroid path integral simulation using a combined quantum mechanical and molecular mechanical (QM/MM) potential to study the anomalous Brønsted relationship between rates and equilibria for deprotonation of nitroalkanes in water, which is known as the nitroalkane anomaly. The deprotonation process is catalyzed by nitroalkane oxidase. Our results show that the difference in solvent polarization effects for the TS and products is a major factor for the differential solvent effects on rate and equilibrium of nitroalkane deprotonation. This is due to poor charge delocalization as a result of slow rehybridization compared to bond breaking. Although solvent effects do not affect significantly the computed kinetic isotope effects in comparison with the gas-phase value, there is slight solvent-induced increase in tunneling. The present results suggest that an effective means by which the transition state can be stabilized in the enzyme nitroalkane oxidase is to facilitate the Calpha rehybridization.

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Year:  2005        PMID: 16305206     DOI: 10.1021/ja055881u

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

1.  Investigation of solvent effects on the rate and stereoselectivity of the Henry reaction.

Authors:  Jakub Kostal; Adelina M Voutchkova; William L Jorgensen
Journal:  Org Lett       Date:  2011-12-14       Impact factor: 6.005

Review 2.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

3.  Combined QM/MM and path integral simulations of kinetic isotope effects in the proton transfer reaction between nitroethane and acetate ion in water.

Authors:  Jiali Gao; Kin-Yiu Wong; Dan T Major
Journal:  J Comput Chem       Date:  2008-03       Impact factor: 3.376

4.  Differential quantum tunneling contributions in nitroalkane oxidase catalyzed and the uncatalyzed proton transfer reaction.

Authors:  Dan T Major; Annie Heroux; Allen M Orville; Michael P Valley; Paul F Fitzpatrick; Jiali Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-19       Impact factor: 11.205

5.  Enzymatic Kinetic Isotope Effects from Path-Integral Free Energy Perturbation Theory.

Authors:  J Gao
Journal:  Methods Enzymol       Date:  2016-07-22       Impact factor: 1.600

6.  Identification of a hypothetical protein from Podospora anserina as a nitroalkane oxidase.

Authors:  José R Tormos; Alexander B Taylor; S Colette Daubner; P John Hart; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

7.  Kinetic isotope effects of L-Dopa decarboxylase.

Authors:  Yen-lin Lin; Jiali Gao
Journal:  J Am Chem Soc       Date:  2011-03-02       Impact factor: 15.419

8.  Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.

Authors:  Paul F Fitzpatrick; Dragana M Bozinovski; Annie Héroux; Patrick G Shaw; Michael P Valley; Allen M Orville
Journal:  Biochemistry       Date:  2007-11-10       Impact factor: 3.162

9.  Characterization of active site residues of nitroalkane oxidase.

Authors:  Michael P Valley; Nana S Fenny; Shah R Ali; Paul F Fitzpatrick
Journal:  Bioorg Chem       Date:  2009-12-28       Impact factor: 5.275

10.  Solvent isotope and viscosity effects on the steady-state kinetics of the flavoprotein nitroalkane oxidase.

Authors:  Giovanni Gadda; Paul F Fitzpatrick
Journal:  FEBS Lett       Date:  2013-05-06       Impact factor: 4.124

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