Literature DB >> 23647439

Alternative splicing and retinal degeneration.

M M Liu1, D J Zack.   

Abstract

Alternative splicing is highly regulated in tissue-specific and development-specific patterns, and it has been estimated that 15% of disease-causing point mutations affect pre-mRNA splicing. In this review, we consider the cis-acting splice site and trans-acting splicing factor mutations that affect pre-mRNA splicing and contribute to retinal degeneration. Numerous splice site mutations have been identified in retinitis pigmentosa (RP) and various cone-rod dystrophies. Mutations in alternatively spliced retina-specific exons of the widely expressed RPGR and COL2A1 genes lead primarily to X-linked RP and ocular variants of Stickler syndrome, respectively. Furthermore, mutations in general pre-mRNA splicing factors, such as PRPF31, PRPF8, and PRPF3, predominantly cause autosomal dominant RP. These findings suggest an important role for pre-mRNA splicing in retinal homeostasis and the pathogenesis of retinal degenerative diseases. The development of novel therapeutic strategies to modulate aberrant splicing, including small molecule-based therapies, has the potential to lead to new treatments for retinal degenerative diseases.
© 2013 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  alternative splicing; retinal degeneration; retinitis pigmentosa; small molecules

Mesh:

Substances:

Year:  2013        PMID: 23647439      PMCID: PMC4147722          DOI: 10.1111/cge.12181

Source DB:  PubMed          Journal:  Clin Genet        ISSN: 0009-9163            Impact factor:   4.438


  72 in total

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Review 2.  Alternative pre-mRNA splicing: the logic of combinatorial control.

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4.  Genome-wide detection of tissue-specific alternative splicing in the human transcriptome.

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5.  Mutations in a protein target of the Pim-1 kinase associated with the RP9 form of autosomal dominant retinitis pigmentosa.

Authors:  T Jeffrey Keen; Matthew M Hims; Arthur B McKie; Anthony T Moore; Rob M Doran; David A Mackey; David C Mansfield; Robert F Mueller; Shomi S Bhattacharya; Alan C Bird; Alexander F Markham; Chris F Inglehearn
Journal:  Eur J Hum Genet       Date:  2002-04       Impact factor: 4.246

6.  Radial perivascular retinal degeneration: a key to the clinical diagnosis of an ocular variant of Stickler syndrome with minimal or no systemic manifestations.

Authors:  Edward S Parma; Jarmo Körkkö; William S Hagler; Leena Ala-Kokko
Journal:  Am J Ophthalmol       Date:  2002-11       Impact factor: 5.258

7.  Protein 61K, encoded by a gene (PRPF31) linked to autosomal dominant retinitis pigmentosa, is required for U4/U6*U5 tri-snRNP formation and pre-mRNA splicing.

Authors:  Olga V Makarova; Evgeny M Makarov; Sunbin Liu; Hans-Peter Vornlocher; Reinhard Lührmann
Journal:  EMBO J       Date:  2002-03-01       Impact factor: 11.598

8.  Mutations in HPRP3, a third member of pre-mRNA splicing factor genes, implicated in autosomal dominant retinitis pigmentosa.

Authors:  Christina F Chakarova; Matthew M Hims; Hanno Bolz; Leen Abu-Safieh; Reshma J Patel; Myrto G Papaioannou; Chris F Inglehearn; T Jeffrey Keen; Catherine Willis; Anthony T Moore; Thomas Rosenberg; Andrew R Webster; Alan C Bird; Andreas Gal; David Hunt; Eranga N Vithana; Shomi S Bhattacharya
Journal:  Hum Mol Genet       Date:  2002-01-01       Impact factor: 6.150

Review 9.  Mutations of RPGR in X-linked retinitis pigmentosa (RP3).

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Journal:  Hum Mutat       Date:  2002-05       Impact factor: 4.878

10.  Mfrp, a gene encoding a frizzled related protein, is mutated in the mouse retinal degeneration 6.

Authors:  Shuhei Kameya; Norman L Hawes; Bo Chang; John R Heckenlively; Jürgen K Naggert; Patsy M Nishina
Journal:  Hum Mol Genet       Date:  2002-08-01       Impact factor: 6.150

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  42 in total

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Authors:  Susan S Brooks; Alissa L Wall; Christelle Golzio; David W Reid; Amalia Kondyles; Jason R Willer; Christina Botti; Christopher V Nicchitta; Nicholas Katsanis; Erica E Davis
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3.  NRL-Regulated Transcriptome Dynamics of Developing Rod Photoreceptors.

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Journal:  Cell Rep       Date:  2016-11-22       Impact factor: 9.423

4.  Mutations in pre-mRNA processing factors 3, 8, and 31 cause dysfunction of the retinal pigment epithelium.

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Journal:  Am J Pathol       Date:  2014-08-08       Impact factor: 4.307

5.  Dynamic landscape of alternative polyadenylation during retinal development.

Authors:  Wenyan Hu; Shengguo Li; Ji Yeon Park; Sridhar Boppana; Ting Ni; Miaoxin Li; Jun Zhu; Bin Tian; Zhi Xie; Mengqing Xiang
Journal:  Cell Mol Life Sci       Date:  2016-12-18       Impact factor: 9.261

6.  Disease modeling of core pre-mRNA splicing factor haploinsufficiency.

Authors:  Katherine A Wood; Charlie F Rowlands; Wasay Mohiuddin Shaikh Qureshi; Huw B Thomas; Weronika A Buczek; Tracy A Briggs; Simon J Hubbard; Kathryn E Hentges; William G Newman; Raymond T O'Keefe
Journal:  Hum Mol Genet       Date:  2019-11-15       Impact factor: 6.150

Review 7.  RNA Biology in Retinal Development and Disease.

Authors:  Lina Zelinger; Anand Swaroop
Journal:  Trends Genet       Date:  2018-01-31       Impact factor: 11.639

8.  A novel mutation in PRPF31, causative of autosomal dominant retinitis pigmentosa, using the BGISEQ-500 sequencer.

Authors:  Yu Zheng; Hai-Lin Wang; Jian-Kang Li; Li Xu; Laurent Tellier; Xiao-Lin Li; Xiao-Yan Huang; Wei Li; Tong-Tong Niu; Huan-Ming Yang; Jian-Guo Zhang; Dong-Ning Liu
Journal:  Int J Ophthalmol       Date:  2018-01-18       Impact factor: 1.779

Review 9.  RNA mis-splicing in disease.

Authors:  Marina M Scotti; Maurice S Swanson
Journal:  Nat Rev Genet       Date:  2015-11-23       Impact factor: 53.242

Review 10.  Roles and mechanisms of alternative splicing in cancer - implications for care.

Authors:  Sophie C Bonnal; Irene López-Oreja; Juan Valcárcel
Journal:  Nat Rev Clin Oncol       Date:  2020-04-17       Impact factor: 66.675

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