Literature DB >> 26593421

RNA mis-splicing in disease.

Marina M Scotti1, Maurice S Swanson1.   

Abstract

The human transcriptome is composed of a vast RNA population that undergoes further diversification by splicing. Detecting specific splice sites in this large sequence pool is the responsibility of the major and minor spliceosomes in collaboration with numerous splicing factors. This complexity makes splicing susceptible to sequence polymorphisms and deleterious mutations. Indeed, RNA mis-splicing underlies a growing number of human diseases with substantial societal consequences. Here, we provide an overview of RNA splicing mechanisms followed by a discussion of disease-associated errors, with an emphasis on recently described mutations that have provided new insights into splicing regulation. We also discuss emerging strategies for splicing-modulating therapy.

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Year:  2015        PMID: 26593421      PMCID: PMC5993438          DOI: 10.1038/nrg.2015.3

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  141 in total

1.  Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing.

Authors:  Qun Pan; Ofer Shai; Leo J Lee; Brendan J Frey; Benjamin J Blencowe
Journal:  Nat Genet       Date:  2008-11-02       Impact factor: 38.330

2.  Functional splicing network reveals extensive regulatory potential of the core spliceosomal machinery.

Authors:  Panagiotis Papasaikas; J Ramón Tejedor; Luisa Vigevani; Juan Valcárcel
Journal:  Mol Cell       Date:  2014-12-04       Impact factor: 17.970

Review 3.  The tip of the iceberg: RNA-binding proteins with prion-like domains in neurodegenerative disease.

Authors:  Oliver D King; Aaron D Gitler; James Shorter
Journal:  Brain Res       Date:  2012-01-21       Impact factor: 3.252

4.  Electrophysiological and histopathological characteristics of progressive atrioventricular block accompanied by familial dilated cardiomyopathy caused by a novel mutation of lamin A/C gene.

Authors:  Jun Otomo; Shigeo Kure; Tomoko Shiba; Akihiko Karibe; Tsuyoshi Shinozaki; Tetsuo Yagi; Hiroshi Naganuma; Fumiaki Tezuka; Masaetsu Miura; Meiichi Ito; Jun Watanabe; Yoichi Matsubara; Kunio Shirato
Journal:  J Cardiovasc Electrophysiol       Date:  2005-02

5.  circRNA biogenesis competes with pre-mRNA splicing.

Authors:  Reut Ashwal-Fluss; Markus Meyer; Nagarjuna Reddy Pamudurti; Andranik Ivanov; Osnat Bartok; Mor Hanan; Naveh Evantal; Sebastian Memczak; Nikolaus Rajewsky; Sebastian Kadener
Journal:  Mol Cell       Date:  2014-09-18       Impact factor: 17.970

6.  SRSF2 Is Essential for Hematopoiesis, and Its Myelodysplastic Syndrome-Related Mutations Dysregulate Alternative Pre-mRNA Splicing.

Authors:  Yukiko Komeno; Yi-Jou Huang; Jinsong Qiu; Leo Lin; YiJun Xu; Yu Zhou; Liang Chen; Dora D Monterroza; Hairi Li; Russell C DeKelver; Ming Yan; Xiang-Dong Fu; Dong-Er Zhang
Journal:  Mol Cell Biol       Date:  2015-06-29       Impact factor: 4.272

7.  Determinants of exon 7 splicing in the spinal muscular atrophy genes, SMN1 and SMN2.

Authors:  Luca Cartegni; Michelle L Hastings; John A Calarco; Elisa de Stanchina; Adrian R Krainer
Journal:  Am J Hum Genet       Date:  2005-11-16       Impact factor: 11.025

Review 8.  Phagocytosis of retinal rod and cone photoreceptors.

Authors:  Brian M Kevany; Krzysztof Palczewski
Journal:  Physiology (Bethesda)       Date:  2010-02

9.  Enhancement of SMN protein levels in a mouse model of spinal muscular atrophy using novel drug-like compounds.

Authors:  Jonathan J Cherry; Erkan Y Osman; Matthew C Evans; Sungwoon Choi; Xuechao Xing; Gregory D Cuny; Marcie A Glicksman; Christian L Lorson; Elliot J Androphy
Journal:  EMBO Mol Med       Date:  2013-06-05       Impact factor: 12.137

10.  Antisense suppression of donor splice site mutations in the dystrophin gene transcript.

Authors:  Sue Fletcher; Penny L Meloni; Russell D Johnsen; Brenda L Wong; Francesco Muntoni; Stephen D Wilton
Journal:  Mol Genet Genomic Med       Date:  2013-06-13       Impact factor: 2.183

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  382 in total

Review 1.  Intersections of post-transcriptional gene regulatory mechanisms with intermediary metabolism.

Authors:  Waqar Arif; Gandhar Datar; Auinash Kalsotra
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2017-01-11       Impact factor: 4.490

2.  Ptbp2 Controls an Alternative Splicing Network Required for Cell Communication during Spermatogenesis.

Authors:  Molly M Hannigan; Leah L Zagore; Donny D Licatalosi
Journal:  Cell Rep       Date:  2017-06-20       Impact factor: 9.423

3.  Dysregulation of cotranscriptional alternative splicing underlies CHARGE syndrome.

Authors:  Catherine Bélanger; Félix-Antoine Bérubé-Simard; Elizabeth Leduc; Guillaume Bernas; Philippe M Campeau; Seema R Lalani; Donna M Martin; Stephanie Bielas; Amanda Moccia; Anshika Srivastava; David W Silversides; Nicolas Pilon
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-08       Impact factor: 11.205

4.  Opposing roles of miR-294 and MBNL1/2 in shaping the gene regulatory network of embryonic stem cells.

Authors:  Da-Ren Wu; Kai-Li Gu; Jian-Cheng Yu; Xing Fu; Xi-Wen Wang; Wen-Ting Guo; Le-Qi Liao; Hong Zhu; Xiao-Shan Zhang; Jingyi Hui; Yangming Wang
Journal:  EMBO Rep       Date:  2018-05-07       Impact factor: 8.807

5.  In vivo and In vitro methods to identify DNA sequence variants that alter RNA Splicing.

Authors:  Parth N Patel; Joshua M Gorham; Kaoru Ito; Christine E Seidman
Journal:  Curr Protoc Hum Genet       Date:  2018-04-26

6.  Engineering Artificial Factors to Specifically Manipulate Alternative Splicing in Human Cells.

Authors:  Huan-Huan Wei; Yuanlong Liu; Yang Wang; Qianyun Lu; Xuerong Yang; Jiefu Li; Zefeng Wang
Journal:  J Vis Exp       Date:  2017-04-26       Impact factor: 1.355

Review 7.  Targeting RNA in mammalian systems with small molecules.

Authors:  Anita Donlic; Amanda E Hargrove
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-05-03       Impact factor: 9.957

Review 8.  Faulty RNA splicing: consequences and therapeutic opportunities in brain and muscle disorders.

Authors:  Vittoria Pagliarini; Piergiorgio La Rosa; Claudio Sette
Journal:  Hum Genet       Date:  2017-04-22       Impact factor: 4.132

9.  Aberrant RNA Splicing in Cancer.

Authors:  Luisa Escobar-Hoyos; Katherine Knorr; Omar Abdel-Wahab
Journal:  Annu Rev Cancer Biol       Date:  2018-11-28

10.  Swimming downstream: statistical analysis of differential transcript usage following Salmon quantification.

Authors:  Michael I Love; Charlotte Soneson; Rob Patro
Journal:  F1000Res       Date:  2018-06-27
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